Alot019162.2
Basic Information
- Insect
- Agrochola lota
- Gene Symbol
- -
- Assembly
- GCA_947364205.1
- Location
- OX376244.1:3383700-3390199[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0024 0.18 12.8 5.9 1 23 161 184 161 184 0.97 2 17 0.00053 0.041 14.8 0.5 1 23 193 216 193 216 0.96 3 17 0.013 0.98 10.5 0.4 2 23 229 251 229 251 0.97 4 17 0.00037 0.028 15.3 0.8 1 23 260 283 260 283 0.97 5 17 0.00029 0.022 15.6 2.9 1 23 295 318 295 319 0.96 6 17 0.00013 0.01 16.7 0.7 2 23 347 369 346 369 0.97 7 17 0.0013 0.097 13.6 1.2 2 23 379 401 378 401 0.96 8 17 0.074 5.6 8.1 1.2 3 19 407 423 405 426 0.92 9 17 0.00074 0.056 14.4 0.6 2 21 431 450 430 453 0.94 10 17 0.35 27 6.0 2.2 3 23 463 484 462 484 0.93 11 17 0.00025 0.019 15.8 3.5 1 23 489 512 489 512 0.94 12 17 0.00045 0.034 15.1 2.1 2 23 524 546 523 546 0.96 13 17 0.16 12 7.0 0.4 1 23 573 596 573 596 0.92 14 17 0.47 36 5.6 0.1 2 23 603 624 602 624 0.91 15 17 0.14 11 7.2 1.7 2 23 630 651 629 651 0.97 16 17 0.018 1.4 10.0 0.1 1 23 717 739 717 739 0.97 17 17 0.077 5.9 8.0 1.9 1 23 745 768 745 768 0.97
Sequence Information
- Coding Sequence
- ATGGGAATAAATAATCAAGCAGCTATGGATCTAGAAGTTGAGGTTAAAATAGAAAATGTTGAATCAGCAAGAAAAGATCCTACCTCATTTTTGCCCGAGGAGCCAATGTCTTATGAAATTAAGAAGAAAAAGAAGAAGAAAAAAAAGAAGCAAGAAGACCCTTTTAAAGACATTGATGACAAAATGAGTGTCAAGATTGAACCAATAACTCTGTTGGATCCAGAGGTTAAAATAAAGGTTGAGGATATAGAAGTGGAATTGGATTTTAATGATTTTGGAGACAACGGTCTTGTTCACGAAAGTCATCACAACGACGATAGTCAAGAACCAGCCGTGAAAATGGAACCGCAAAACCACGATGCCGTCCTTCTTACATTCGAGAGCGTTATCAACGAGAGGAAACCATTTATCGCCGATAGTAGCGAAATGTTTCAAATTTCAAAGAATGAGATGCCAGTGTCAACCAAGCAGGCCCCAAACCACGTCTGTAAAGTCTGCCATCTTGTGTTTCAATCACAGAAAACTCTACGAATGCATCAGAAAAGAAAACATAAGTCTTTTAGAAAATCCTTCAAACATATTTGTGATTACTGTGGCATGGCCTACGAAATGAAGAACAGTTTAGTAGCGCATATTAAGAGGAAACATGGGCCTGATTCAAGGCCAGATGATAGAGAGGAACGGACTTGTGAAATATGTGCTCTGGTCTTCAAAGGAATGGCTCGGTTACGCATGCATATGAGGAGAAAACATGGCTCTTTCCAGGAATCTTTTAAACACGTTTGCGAAGACTGCGGCTTAACTTATGATAAGTACAGAAGTTTGATAGTCCATATACAACGTAAACATTCAAATAATCAGAAACCTGAAATCAATCAATGGTACAACTGTCCGTTCTGTCCTAAGATATTTACGAAAAGAGAAACTTATGCTAGACACGTGCAGAGAAAGCATCACGTGTCAGACGAAAGTATAAAACAAGAAAATAATAGTGAAAATTATTTTGACAATTGTAAAAATGAAGAAACTGGGGAGATAACTTGTAAAGAATGCCCTCTAGTCTTTTCTTCTATTAACTTCTTAAAACTTCATATGCGACGGAAGCATAATGCGTTGAGAGAAGATTTCAGATTGAAGTGCCGGATCTGTAACTTGTCTTACGATAAAATCGAGAGTTTGAAAAGGCATGTCAGAAGAAAACACGACAAAGGATCTCATTGCGAAGTTTGTAACAAACAATTTGACACGCGAGAGATGTATCTCAACCATTCTCACGTGAAAGCTATCAAGGAGTGCAATGTTTGCGGACTGATCTTCGCATCACAAGGTGGCTTAGCGAAACATCAGAGGTGCACACACAAAATGGATTCACCTAAAACAGTCTTTTGCAATCTTTGCAACGAAGGCTTTCACGACAAACGGCAGTTAAAACCGCATTTTATGAAAGTGCATTTAAAAGTATCGTACACTTGTCGATACTGCAAAAAAGTTTTTAAGGCGAAAGAGAGTTATCGACGGCACATATTATTTAAGCACCCTACTTCAAACCATGTTAACGTTCACATGCAAAAATGCGAGCAATGTAGTGCGACTTTTAAAGACGAATTTGATCTTTGTCGGCATATAAATATATTTCACGGTCGCCCTGAAGATATGACGAAAGAAGACAGAGAAATTGTAGAAATAAAGAGAGAAGATCAGGATATAAAGGACTGTTTCCAATGCACCAAGTGCCCAGATACATACTTAACTTGGGAACAGTTGAAATTACACTATGAAGCAACTCATCACAATATAGAAGAAACACAATGTCAAATATGTGGGGAGATACTCCCAGGAAACGAATTACAAAAACACATAAAGAGCCTTCACACGGATACTGAAATGCAGTGCAAATACTGTGAATTTAAGACGAATATTAGAGTAAGTTTGACACAACACACGCTGAGGCATAAAAATGCCGAAACAATTCACTGTGAATACACTGGTTGCAAGTATAAGACGTTCTACGATGGTGCTATGGAGAAGCATAAAAGAAAACATGCTGATCTAGGAGTCAAACTCCAATGTACGCAGTGCCCGTTCCAATCGATGAATAAATACATCTTGAAATATCATGAGGAAGCTCATGAGACGGGGAAAAAACGTTACATGTGTGATCAGTGCGACTACGCAACGATTTTACCAGCCAATCTTGTGCAGCATAAATATAAGCATTCTACAGTAAAGAGGTTCAAATGTGAAGTGTGTCCGTTCGCAACGAAATACAATACATCACTGAGGTTCCATGTTAGGAAAAAACACTGTGATCTACCGACGTTCAGTTAA
- Protein Sequence
- MGINNQAAMDLEVEVKIENVESARKDPTSFLPEEPMSYEIKKKKKKKKKKQEDPFKDIDDKMSVKIEPITLLDPEVKIKVEDIEVELDFNDFGDNGLVHESHHNDDSQEPAVKMEPQNHDAVLLTFESVINERKPFIADSSEMFQISKNEMPVSTKQAPNHVCKVCHLVFQSQKTLRMHQKRKHKSFRKSFKHICDYCGMAYEMKNSLVAHIKRKHGPDSRPDDREERTCEICALVFKGMARLRMHMRRKHGSFQESFKHVCEDCGLTYDKYRSLIVHIQRKHSNNQKPEINQWYNCPFCPKIFTKRETYARHVQRKHHVSDESIKQENNSENYFDNCKNEETGEITCKECPLVFSSINFLKLHMRRKHNALREDFRLKCRICNLSYDKIESLKRHVRRKHDKGSHCEVCNKQFDTREMYLNHSHVKAIKECNVCGLIFASQGGLAKHQRCTHKMDSPKTVFCNLCNEGFHDKRQLKPHFMKVHLKVSYTCRYCKKVFKAKESYRRHILFKHPTSNHVNVHMQKCEQCSATFKDEFDLCRHINIFHGRPEDMTKEDREIVEIKREDQDIKDCFQCTKCPDTYLTWEQLKLHYEATHHNIEETQCQICGEILPGNELQKHIKSLHTDTEMQCKYCEFKTNIRVSLTQHTLRHKNAETIHCEYTGCKYKTFYDGAMEKHKRKHADLGVKLQCTQCPFQSMNKYILKYHEEAHETGKKRYMCDQCDYATILPANLVQHKYKHSTVKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00327297;
- 90% Identity
- iTF_00974040;
- 80% Identity
- -