Alot019847.3


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agrochola lota
Gene Symbol
-
Assembly
GCA_947364205.1
Location
OX376247.1:6126115-6145649[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.0015 0.12 13.4 2.8 1 23 91 113 91 113 0.98
2 25 0.97 73 4.6 0.0 2 23 138 160 137 160 0.92
3 25 0.034 2.6 9.2 2.1 3 23 213 234 212 234 0.97
4 25 0.026 2 9.5 3.0 1 23 265 288 265 288 0.98
5 25 0.00022 0.016 16.1 0.5 2 23 295 317 294 317 0.96
6 25 0.13 10 7.3 0.8 2 23 324 345 324 345 0.96
7 25 0.00027 0.02 15.8 4.3 1 21 351 371 351 374 0.89
8 25 0.038 2.9 9.0 3.4 1 23 452 475 452 475 0.97
9 25 2.7 2.1e+02 3.2 0.4 2 23 544 566 543 566 0.93
10 25 0.049 3.7 8.7 0.4 1 22 612 633 612 635 0.90
11 25 0.4 30 5.8 0.6 3 23 708 729 706 729 0.93
12 25 0.007 0.53 11.3 1.4 3 23 735 756 734 756 0.96
13 25 9.8e-05 0.0075 17.1 2.4 2 23 760 782 759 782 0.92
14 25 0.018 1.3 10.1 0.1 2 23 788 810 787 810 0.94
15 25 0.0015 0.12 13.4 1.0 2 23 818 840 817 840 0.94
16 25 1.5 1.2e+02 4.0 4.0 1 23 886 909 886 909 0.93
17 25 0.37 28 5.9 0.5 3 23 936 957 934 957 0.93
18 25 0.016 1.2 10.2 1.6 2 23 980 1002 979 1002 0.94
19 25 0.02 1.5 9.9 0.0 1 23 1008 1031 1008 1031 0.94
20 25 0.0064 0.48 11.4 2.7 2 19 1038 1055 1037 1060 0.89
21 25 0.17 13 6.9 0.2 2 23 1066 1088 1065 1088 0.92
22 25 0.059 4.5 8.4 1.6 1 23 1095 1118 1095 1118 0.96
23 25 0.0012 0.087 13.8 0.3 2 23 1125 1146 1124 1146 0.93
24 25 5.4e-06 0.00041 21.1 0.8 1 23 1152 1174 1152 1174 0.98
25 25 1.8e-05 0.0013 19.5 1.2 1 23 1180 1202 1180 1203 0.96

Sequence Information

Coding Sequence
ATGTTCTATTCTACGGCAATGTTGGTGCCGTACAAACGAGGCAAAGAAAGACGGCACTGCATTGGAAGCACTGAGGAAACTCGACGTAAAACAGTAACAAAGCATGAAGAAATTCCTGAAACAAAGCCACCATTGCAGAAAGTAAATGATTCTGAAGTGAAAACTGCCAAATCATATGGTGTACTAGAGACCCAAAAGATTTTAAGAGAGAATGTCGCTCGAGTACTTGAAACATCCACACTAATGCCGTTCAAGTGGCTCAAAAACTCATACAGATGCTTTTACTGCTACGAAATCTTCCAACAGCCTAAACATTTAAAAGAACACCAAGACATTCACAAAACGGAAGAAATTGCAAAGAAAATGAAATCATTTTTAGACCCTGCAGTAAACGTAGATGTTTCGAGAATCTCATGCAAACTATGTCCGGAGAAAATTGACGATTTATACTCATTAGTTGATCATTTGGTTATAAAACATGGTATAGAGTTTAATAAAGATATAGGTTTATGTATGAACCCTTTTAAACTCAACAATATCAATGTTTCCTGTGCTATATGCGATGGAATCTACCAAACTTTTGGCCGGCTCCTATTCCATACAGATAGATACCACAAAGGATCCTCGAATGTTCTCTGTGATATTTGTGGGAGTCATTTCAAGACTACTCAACGATTAAAGGAACACATAGACACTAAACACGACCATAAAACAGTTAAATGTAGATTATGTGATGACAAAATGGCGCCAACGACGGTGCGAACTCACATGCAGAGAGTGCACGGGAAGAAATACAAGTGTTTCAATTGTAATGAAGTTTTTGGATCACATTACAAGCGGTCTTTACATATGATGACAGTGCACAAGAACAGGGAGACAATCAAATGCCCCCAATGTCCGTTAACTTTTGTCTTCAGAAGCACTATGATGAGACATTTAAGAGAATCACATTTGCAAGAAAAGAATGCCACATGCGGTGTCTGTGGCTGGAAATGCTTTGAAGGCAGCAGACTTCAAATACACATGCTGAAGCATAGCAATGAGAGGAACTTCAGCTGCAGTGTATGCGGCAAAGCTTTTAAAACAAAGAAGACCTTGAAAACACATTGTAAAAATATACATTTAAAGGTACACGAGATAAACCAATCAGGCATCCTAAAACAAATAATGAAGTTAAACCCAAACGGAGAAAAGGAAAAAAAGAACTATCCAGTAAGGTCACTAAACCGAGCCGCGAAGGAAACCTTGAACAGCAAGCCCTGCCTAGATGAGGAAACCCAAAGGACCTGCAAACTCTTTGTGGATATTCTAGAAACATCTACGGCAGTACCCTTTAGATTTAACAAGATCAAATACAGATGCTTCTTCTGCCTCCAGAACTTTTACATACCATCGCAATTGAAGAAACACACGCAAAGGTACCACATGAACGAAGATCTCAAAGTAATTGTCGAGAAAAATATCATAAAGTCCGTTTTGAAATTGGATATCTCAGAGTTACAATGCAAAATTTGTTGCGACTACTTCGAGGATACTGACACTTTCGTCGCGCATCTTCAAAAGCACAAATTGAAAGTGGAAACCGATTTAACTCACATTCTAAGCTTCAAATTGTCCGATGACGTTATCAGTTGCTACACTTGCAAAACGGAATTTTTGTATTTCTCCTCTCTTTACGAGCACATTCAACTGGCGCATATGCACGGAAAATACTCTAAACAATCATTGGAACCAAGACTTAATGAAAAGACTCGTAAAGAACGACTCGCGACAATACTAACAGTCATCATACACAACTCCACTATAGTCCCTTTTAGATGGCACAGAAGCAAATATATGTGCTTTTACTGCAAATCTGTGTTCGTCGAGAGCGCAGAGCTTAGAGAACACACGGATTTTGAACATAGAGCCATTAACACCCGGGAAATCGTTGTAAGGACGCTGTATACAGGAGGCAGGGTAAAGCTCGACATTTCAAATCTTTGGTGCACCAGCTGTGCAAGTCAATTCGATGATTTCCAAGAATATTTGGAGCATCTATCAGAAACTCATGACCTTAGTATAGACAAAGGAGTCTCCCAATCATTTGACTGTTTCCATTTAGCAGATAATGGAATGTTTTGCGTAGAATGTGGACAGTATTTCCGATTCTTTGGACCTTTACTCAAACATACGTATAAATATCATATCGAACAGATTCTGTGCGAAATCTGCGGTCAAGGATTCTCTGAAAAACATAACGTTCACAACCATGTTAAACTAATTCACGGTATCAAGTCCTGTAAGCATTGCAACGAGACTTTCCGGACGCAGTACGCGTTAAAGAATCACGTAGACAATGTGCATCGGACTGACAAGCTTCAATGTCCGATGTGCCCAAAAATACTCGGTAATAGATACTTAAAGAAACGCCACATGGCCTTAGTCCACGACTGCAAAAGCGCGCAGTTAGTCTGCGAATATTGTTCGAAGATTTTCACGAGAAATAATAAATATGTCCAGCATAAGCTTAGAGTACACGATAAGGAGAAGAATTATTATGTCGAAGAAGAAGCGAGGCTCGCTGAAAAACAAAGAAAAGACGACCTTACGAGGTTTATCACCATCGTCTTAGAAAACTCTTCGATTCTTCCGTTCAGATGGGCTGCTAACAAATACATGTGTTTCTACTGCTGCTGCTCTTTCATAGACAGCGCAAAACTCAAAGAACATACCATTGAAGAGCATAAAGGAGCGAATCTTAAAAACGTACTCAGAACCTTGGTAGGAAGCAGTCGTGTTAAACTCGACACTTCAGAAATCATCTGCAACAAGTGCGAAAGACAATTCCATGTTTTCGAAGAATTCGTGAATCATCTAGCATCAATCCACGAGTTCAAATTTAACAAAGAAATAGCCAATAGTATCTTTAATTTTCATCTATCTGACGATGTAATATCGTGTCAAGAATGTGGTCAGGAGTTCAGATTCTTCGGGACGCTATTAAAGCATGCTCATAAATACCACAATAAATATAAAACATTCCTGTGTGAGATATGTGGGCAAGGATTCGTTGCGTATGCGAATGTGATCAGCCATATAAAAAACGTTCACACATTCTCTCAAGGTCTTAAATGTCGAAGATGCGACAAAGTATTCCGAAACACTTATTCCCTACAAATACACTGCGAAAGAGTCCACAGAACCGAAATGCTGAAATGCCCGAAGTGTCCAGAGATTCTCGCATCACAATACTTTAAAAAACGGCATTTAGCGCTCGTGCATGACGTCAAAAAACTGCAATTCAAATGCGACCAATGCGAGCTGCTGTTTACAATGAAGAGTAGGCTTGTTCAGCATAAATTACGAACTCATTTGAAGCAGAAAACcgtcacctgcgaggtgtgtggcttcaaagtcttcaacaacgaacttttgaaacgccacatggttcgccacgacgactcgagacctttcgagtgcaaaatttgcgaaaaggcgtttcagagaaagaagactttggatattcatatgaggatacacacgaatgataagaggtatgtttgtaaggagtgtgagagggccttcgtgcaggtcactagtttgaagttacatatgagattgcatcacggAGGGACTGGAGGGGCCGAGGGGGCTTCTTGGCATTAA
Protein Sequence
MFYSTAMLVPYKRGKERRHCIGSTEETRRKTVTKHEEIPETKPPLQKVNDSEVKTAKSYGVLETQKILRENVARVLETSTLMPFKWLKNSYRCFYCYEIFQQPKHLKEHQDIHKTEEIAKKMKSFLDPAVNVDVSRISCKLCPEKIDDLYSLVDHLVIKHGIEFNKDIGLCMNPFKLNNINVSCAICDGIYQTFGRLLFHTDRYHKGSSNVLCDICGSHFKTTQRLKEHIDTKHDHKTVKCRLCDDKMAPTTVRTHMQRVHGKKYKCFNCNEVFGSHYKRSLHMMTVHKNRETIKCPQCPLTFVFRSTMMRHLRESHLQEKNATCGVCGWKCFEGSRLQIHMLKHSNERNFSCSVCGKAFKTKKTLKTHCKNIHLKVHEINQSGILKQIMKLNPNGEKEKKNYPVRSLNRAAKETLNSKPCLDEETQRTCKLFVDILETSTAVPFRFNKIKYRCFFCLQNFYIPSQLKKHTQRYHMNEDLKVIVEKNIIKSVLKLDISELQCKICCDYFEDTDTFVAHLQKHKLKVETDLTHILSFKLSDDVISCYTCKTEFLYFSSLYEHIQLAHMHGKYSKQSLEPRLNEKTRKERLATILTVIIHNSTIVPFRWHRSKYMCFYCKSVFVESAELREHTDFEHRAINTREIVVRTLYTGGRVKLDISNLWCTSCASQFDDFQEYLEHLSETHDLSIDKGVSQSFDCFHLADNGMFCVECGQYFRFFGPLLKHTYKYHIEQILCEICGQGFSEKHNVHNHVKLIHGIKSCKHCNETFRTQYALKNHVDNVHRTDKLQCPMCPKILGNRYLKKRHMALVHDCKSAQLVCEYCSKIFTRNNKYVQHKLRVHDKEKNYYVEEEARLAEKQRKDDLTRFITIVLENSSILPFRWAANKYMCFYCCCSFIDSAKLKEHTIEEHKGANLKNVLRTLVGSSRVKLDTSEIICNKCERQFHVFEEFVNHLASIHEFKFNKEIANSIFNFHLSDDVISCQECGQEFRFFGTLLKHAHKYHNKYKTFLCEICGQGFVAYANVISHIKNVHTFSQGLKCRRCDKVFRNTYSLQIHCERVHRTEMLKCPKCPEILASQYFKKRHLALVHDVKKLQFKCDQCELLFTMKSRLVQHKLRTHLKQKTVTCEVCGFKVFNNELLKRHMVRHDDSRPFECKICEKAFQRKKTLDIHMRIHTNDKRYVCKECERAFVQVTSLKLHMRLHHGGTGGAEGASWH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-