Alot011715.1
Basic Information
- Insect
- Agrochola lota
- Gene Symbol
- Zfy1
- Assembly
- GCA_947364205.1
- Location
- OX376235.1:20243542-20252591[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.13 9.5 7.4 0.9 2 23 247 268 246 268 0.96 2 14 0.13 10 7.3 0.3 6 23 280 298 280 298 0.95 3 14 3.5 2.7e+02 2.8 0.6 3 23 310 331 309 331 0.92 4 14 6.8e-08 5.1e-06 27.1 1.0 2 23 354 375 354 375 0.97 5 14 1.4e-05 0.0011 19.8 2.6 1 23 381 404 381 404 0.96 6 14 0.086 6.5 7.9 0.0 1 23 410 432 410 432 0.93 7 14 3.1e-06 0.00024 21.8 1.8 1 23 438 460 438 460 0.98 8 14 0.54 41 5.4 3.2 1 23 581 603 581 603 0.95 9 14 0.00034 0.026 15.4 2.0 2 23 610 632 609 632 0.92 10 14 3.6e-06 0.00027 21.7 1.5 1 23 638 660 638 660 0.98 11 14 2e-07 1.5e-05 25.6 3.4 1 23 666 688 666 688 0.98 12 14 0.0001 0.0076 17.1 0.2 1 23 694 716 694 716 0.98 13 14 0.00016 0.012 16.5 1.6 1 23 722 744 722 744 0.93 14 14 0.00079 0.06 14.3 1.7 1 23 750 773 750 773 0.93
Sequence Information
- Coding Sequence
- ATGAATATTGAAACCGAAAAAATATTTTTACAAAATTCTGCTCCAAGTCAGTCTTCGGCCCCCTCGCAGATTATGGGCGCCCTAGCACCGTCGCTCAACTCGCAGAGTAACCTAGATAATGTCAGAGACTTCTCAAATGTGTGTCGGACATGCGCCACCATCACAGAGTTTGTTATGCCCATATTCTCTGGGGAAGGGCTGCAGAACAACTTAGCTGAGAAAATAAAGAGACACTTACCAATACAGGTACGGGAGAGCGACGAGCTACCGCTGGTGGTATGCTACCAGTGTGCGAGCACGCTGCTGGCGTGGCATGAACTGGTGAAGTGTTCCATTGAGGCCGACGCAGCCCTGCGTGCGAAAATCTGCTCCAACCAACGGAAAACAAATCCACATAACGTTACCATTAAATCAAGTTCAGGTGTAGAAGAGGAAGCACAGAGCAAGTTGTTTTACACGAGTGTCAGAAATGCCCTCATTGACTTTCATATTGATCTGGATGAAGATGATACTGATGTAGAGTTTGTTTGCCAAAAGTGTGTGGAGAAGCCAGCGCTGACCACTGTGCACAGCCTCGCTGAACATATCCGATACGACCACTCTCCTGACACACTTAACAACACTGTAAAATCATTCATCACCAACTACATAACTTTCGAACAAGTGCTAGCGGACGATTCTGACAGAGAAACACAATCTGACTCTAAAGAAAAGTCCCAGAGAGTTTTGCCGAGCCTGCACTGTCCGTTCTGCGCGAGTGTGTTCTCTTCGGCCACGCGGCTCGTGTACCATCTCAACAAACACGTGGAGGTGAGCATGGCGGCCAGCCCCATGTGCTGCGACCTCGTCTACAGCGACAAGAAACACTTCGTACAACACTTGCAAGAGGCACATGTTGACAGGACAGCCGACGAGCCAGTGCCAGTGTGCGTCAGCTGTGGCTTCACCGCAAACCATACCGAAGAAATGAGACAGCATTATAAAGATGCGCACAACGATGTGAAAAGTGCGAAAGAGAAAAAAATTGAGAGTCCAAACAACCAGAAGTACATCCCAGCGGTGTGCCCCGAGTGCAACAAGACGTTCTCCAATAAGTACAACATGTTCGCGCACATGCGCAGTCACACGCACACCGCGGTCTACCCGTGCGACAAGTGCACCCGGACCTACCGCAACCAGGGAAACCTTACTCATCACAAGAGGCTTGCGCACCAGGGAATACTCAACTTCATATGCGTCGAGTGCGGGGAGGCCTTCCCCAGTCGGTTAGAGCGCGACATACACGCGCGTATACATTCGGGAGAGACGCCCTACAAGTGCCCGCACTGCGGCAAGTCGTACCGCGCCAAGAACACGCTCACACAACACCTCGAGATACACGCGGATATACGCAAATACAAGAGCCCCTGCCACTTGCCCGAGGATCTCCGCAGTGCAACTTCTGACCTGTCCGAACTGTCCGATGACGAGCCGCTGGCCACGTTCGCTACCAAAAAGTCCACGAAACTCTATACCAACTTCTACAGAGCACTCGTGAACTTTAGAGACCATTTTGTTAATGATCAACATCATGAGGATTATCCTGACTTCACCGACTCGTCGAGTGTGTCTGACGCTGAAGAGAATGACGTGGACAGGTTCGACGACCTGACGCAGTGCAACATGAGGCGAGACAGACTGGACGAGGAGACGAGGCTAGAGCTGAGAGAAGTGCAGAACAAAATCGACAACAAGACATACTACATGTGTAAGATTTGTAGCAAGAACCTAAGCTCTGCGCACACGTACCTGTTTCACAAGCGCATTCACACTGGTGAGCGGCCGTGCGTGTGCCACGTGTGCGGCAAGCAGTTCCGCGCGCCCAACGGACTGCAGCGGCACCTCACAGAGACGCACGAGCGCGTGCGCCGGTACAACTGCTCGCTCTGTACCAAGAACTTTGCCAACTCACAGAATCTCAAGCAACACTTACGGATACACACCGGAGAGAAGCCTTTCGTGTGTCCTCACTGCGGGAAGAGGTTCACTCAGAGCGGTTCGTTACATGTGCATCTGAAGACACACAGTGAACAGTTTCCTTATGAGTGCGCGGAGTGCGGGGCTAAGTTCAGACTGCGGTCGGGGCTGGTGCGGCACAGACTTAAGCACACGGGCGAGCGGCCGCACGTGTGCGCGACGTGCGGCAAGGGGTTCCGGCAGCGGCATGAGCTCACGACACACGGCCTCGCGCACAGCGGCGCCGCGCCGCACGCCTGCGCCGCCTGCCCGCGCGCCTTCCGCCAGCGTCGCGCACTGCGGCACCACGTACGGCGCGTGCACGACGCGGGGCCTCCCGACATCGTCTACAACGTCACGCACTACTAG
- Protein Sequence
- MNIETEKIFLQNSAPSQSSAPSQIMGALAPSLNSQSNLDNVRDFSNVCRTCATITEFVMPIFSGEGLQNNLAEKIKRHLPIQVRESDELPLVVCYQCASTLLAWHELVKCSIEADAALRAKICSNQRKTNPHNVTIKSSSGVEEEAQSKLFYTSVRNALIDFHIDLDEDDTDVEFVCQKCVEKPALTTVHSLAEHIRYDHSPDTLNNTVKSFITNYITFEQVLADDSDRETQSDSKEKSQRVLPSLHCPFCASVFSSATRLVYHLNKHVEVSMAASPMCCDLVYSDKKHFVQHLQEAHVDRTADEPVPVCVSCGFTANHTEEMRQHYKDAHNDVKSAKEKKIESPNNQKYIPAVCPECNKTFSNKYNMFAHMRSHTHTAVYPCDKCTRTYRNQGNLTHHKRLAHQGILNFICVECGEAFPSRLERDIHARIHSGETPYKCPHCGKSYRAKNTLTQHLEIHADIRKYKSPCHLPEDLRSATSDLSELSDDEPLATFATKKSTKLYTNFYRALVNFRDHFVNDQHHEDYPDFTDSSSVSDAEENDVDRFDDLTQCNMRRDRLDEETRLELREVQNKIDNKTYYMCKICSKNLSSAHTYLFHKRIHTGERPCVCHVCGKQFRAPNGLQRHLTETHERVRRYNCSLCTKNFANSQNLKQHLRIHTGEKPFVCPHCGKRFTQSGSLHVHLKTHSEQFPYECAECGAKFRLRSGLVRHRLKHTGERPHVCATCGKGFRQRHELTTHGLAHSGAAPHACAACPRAFRQRRALRHHVRRVHDAGPPDIVYNVTHY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01230874;
- 90% Identity
- iTF_00123588;
- 80% Identity
- -