Alot008248.1
Basic Information
- Insect
- Agrochola lota
- Gene Symbol
- -
- Assembly
- GCA_947364205.1
- Location
- OX376239.1:13030233-13031339[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-11 4e-09 36.5 0.1 4 40 18 55 15 59 0.85
Sequence Information
- Coding Sequence
- ATGGTAAGCAattacaaaagaaaaacaaacaaaggatcatattcgaaacaaaagttacaagaagcagcagaagctgttagaaatggccatctgagtggctataaagctgcgcaaatttataatattcctcgcatgactattatggaccatgtgaaaaacaggagatttaaatccaattctcttggcagaagcactgcgctgtctttggaagtcgaaacaaaattagcttcgttactacatttaatggaaaaatatggtttcggtttgaaaaaagaggtcctagaaatggttggccagtatgtaaaccgtaatctcatatcgacgcctttcaaaaatggagctccagggcaggcgtggtttactgcattcaaaaaacgacatcatttttccgtgaagaaaccccaggcagtggaatacgcgcgtaagaaagccgtagacccatttatagtttacccatattttgaattgcttaataatacattgaaagaattaaaattattgaatcaaccagccgccatttggaatttagacgaaactagtttttcgaatgatcccaaaaaatcaaaaattgttggcatgaaaggacacgccgcgacaagagtcatttcctcgcctggtagagaaaacactactgttttgcttggcgccagtgcattaggacaaaaaacacccccactaataatttttaagggcaaaaacgtttgggatgaatggacatctccgtatgcttatcccggcacatcctacgctgctacaaaaaaaggatggatggagaccgaagtctttgaaatgtattttaaaaaagtttttttgccagctgttggagatcaacgtccgattcttcttatttatgatggacacgctactcatgtaggattaaatataaccgaggaagcgcgtaaagcagatataacaatacttaaactacctctgcatactagtcacatattacaaccgctggatgtagcggtcatgaaatcatttaaagatcggtgggatccaatgctcgtaaaatggcagcgttcaaatatcggagtgaagctcccaaagaaagagtttgcgaggTTAAGAGGGCTATCACACTTTTTCTTGTATTTAAGCGTTTGA
- Protein Sequence
- MVSNYKRKTNKGSYSKQKLQEAAEAVRNGHLSGYKAAQIYNIPRMTIMDHVKNRRFKSNSLGRSTALSLEVETKLASLLHLMEKYGFGLKKEVLEMVGQYVNRNLISTPFKNGAPGQAWFTAFKKRHHFSVKKPQAVEYARKKAVDPFIVYPYFELLNNTLKELKLLNQPAAIWNLDETSFSNDPKKSKIVGMKGHAATRVISSPGRENTTVLLGASALGQKTPPLIIFKGKNVWDEWTSPYAYPGTSYAATKKGWMETEVFEMYFKKVFLPAVGDQRPILLIYDGHATHVGLNITEEARKADITILKLPLHTSHILQPLDVAVMKSFKDRWDPMLVKWQRSNIGVKLPKKEFARLRGLSHFFLYLSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00284459; iTF_00147255; iTF_00445052; iTF_01538667;
- 90% Identity
- iTF_00147255;
- 80% Identity
- -