Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.61 2.1e+02 2.2 0.0 6 23 16 33 16 34 0.90

2 10 0.61 2.1e+02 2.2 0.0 6 23 37 54 37 55 0.90

3 10 0.61 2.1e+02 2.2 0.0 6 23 58 75 58 76 0.90

4 10 0.057 20 5.5 0.0 6 23 79 96 79 97 0.93

5 10 0.61 2.1e+02 2.2 0.0 6 23 100 117 100 118 0.90

6 10 0.61 2.1e+02 2.2 0.0 6 23 121 138 121 139 0.90

7 10 0.057 20 5.5 0.0 6 23 142 159 142 160 0.93

8 10 0.92 3.2e+02 1.6 0.0 6 22 163 179 163 181 0.89

9 10 5.6 1.9e+03 -0.9 0.0 11 22 189 200 183 200 0.71

10 10 0.62 2.1e+02 2.2 0.0 6 22 205 221 205 223 0.90

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.61	2.1e+02	2.2	6	23	16	33	16	34	0.90
2	10	0.61	2.1e+02	2.2	6	23	37	54	37	55	0.90
3	10	0.61	2.1e+02	2.2	6	23	58	75	58	76	0.90
4	10	0.057	20	5.5	6	23	79	96	79	97	0.93
5	10	0.61	2.1e+02	2.2	6	23	100	117	100	118	0.90
6	10	0.61	2.1e+02	2.2	6	23	121	138	121	139	0.90
7	10	0.057	20	5.5	6	23	142	159	142	160	0.93
8	10	0.92	3.2e+02	1.6	6	22	163	179	163	181	0.89
9	10	5.6	1.9e+03	-0.9	11	22	189	200	183	200	0.71
10	10	0.62	2.1e+02	2.2	6	22	205	221	205	223	0.90

Coding Sequence: ATGCCAGGGGGCCCACTATCCACTCATCGTGCAGGCCCCGGCGCAGCCCGCGCGCTACCGCACATACCAGGGGGCCCACTCTCTACTCATCGTGCAGGCCCCGGCGCAGCCCGCGCGCTACCGCACATACCAGGGGGCCCACTCTCTACTCATCGTGCAGGCCCCGGCGCAGCCCGCGCGCTACCGCACATACCAGGGGGCCCACTCTCTACTCATCGTGCAGGCCCCGGCGCAGCCCGCGCGCTACCGCACATACTAGGGGGCCCACTCTCCACTCATCGTGCAGGCCCCGGCGCAGCCCGCGCGCTACCGCACATACCAGGGGGCCCACTCTCTACTCATCGTGCAGGCCCCGGCGCAGCCCGCGCGCTACCGCACATACCAGGGGGCCCACTCTCTACTCATCGTGCAGGCCCCGGCGCAGCCCGCGCGCTACCGCACATACTAGGGGGCCCACTCTCCACTCATCGTGCAGGCCCCGGCGCAGCCCGCGCGCTACCGCACCTACTAGGGGGCCCACTCTCCACTCATCATGCAGGCCCCGGCGCAGCCCGCGTGGTACGTCACACACTAGGGGGCCAACTCTCCAGTCACCGTGCAGACCCCGGCGCAGCTCGCGCGCTACCGCACACACTAGGGGGCCAGCTCTCCAGTCACCGTGCAGGCCCCGGCGCAGCTCGCGCGCTACCGCACACACTAGGGGGCCCACTCTCCACTCACCGTACAGGCAACAACACTGCACTTTGTTTACTAACAGAAAACTGA
Protein Sequence: MPGGPLSTHRAGPGAARALPHIPGGPLSTHRAGPGAARALPHIPGGPLSTHRAGPGAARALPHIPGGPLSTHRAGPGAARALPHILGGPLSTHRAGPGAARALPHIPGGPLSTHRAGPGAARALPHIPGGPLSTHRAGPGAARALPHILGGPLSTHRAGPGAARALPHLLGGPLSTHHAGPGAARVVRHTLGGQLSSHRADPGAARALPHTLGGQLSSHRAGPGAARALPHTLGGPLSTHRTGNNTALCLLTEN

Sequence clustering based on sequence similarity using MMseqs2