Alot003310.1
Basic Information
- Insect
- Agrochola lota
- Gene Symbol
- -
- Assembly
- GCA_947364205.1
- Location
- OX376227.1:18064657-18072758[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.00022 0.076 13.2 0.8 1 24 106 129 106 130 0.96 2 2 2.6e-10 8.9e-08 32.2 0.1 1 45 144 188 144 188 0.96
Sequence Information
- Coding Sequence
- ATGTATAAAAAAACTAAGGGAAATAAGGTATGTATAGAGTCATTAAATGATAATACGAAAGATGAGACTGCAGTAGAAAGTAATTTACAAATAGAAAGTGAACCAACAGCTATTGAAATGACCAATATGAATGCTGAAAGTGAAGAAGATAAAGAAAAAGATTGCTCATCGGATGATAGTGTCGCAGATCCTCATTATCACATTGAAAATAATGATTTATCGTCTGATTCGGATGAAACAGTAGAACAGAATGAAGAAGAAAATATTTCACGTTCTATTAAATTGGGTTGGAAGCGTGCAAAACGTGCCATGTGGACAGAAGAAGACTTATGTGCAGCTATGGCAGCTGTTACTAGCGGACATATGACACAGAGAGCTGCCGCACGTTCTACTAAATTGGGCTTGAAGCACGCAAACTATGCCATCTGGACGGAAGAAGACTTACGTGCAGCTATGGCAGCTGTTACAAGCGGTCATATGACACAGACAGCTGCAGGAAAACGACATGGAATTCCAGGAGCAACTCTCAGCAATCATTTGAAAACAGGAAGTTTTGTGAAACGACTGGGACGAAAATCAATATTCAGTAAGATTAAATTGGGTTTGAAACGTGCTAAACGTGGTTTGTGGACCAAACAAGATTTACGTGCTGCTATGGGAGCTGTTACAAGGGCCCCATATGACACAGAAAACTGCTGCATAGCATCATGGAATTCCAATGCCAACTCTCAGCGATCATTTGAAAACGGGAAGTCAGTAAAACGAATGGGACGAAGTCGAATATTGGACGAAGTACAGGAAAAAATACTTATAAAGATTACATAA
- Protein Sequence
- MYKKTKGNKVCIESLNDNTKDETAVESNLQIESEPTAIEMTNMNAESEEDKEKDCSSDDSVADPHYHIENNDLSSDSDETVEQNEEENISRSIKLGWKRAKRAMWTEEDLCAAMAAVTSGHMTQRAAARSTKLGLKHANYAIWTEEDLRAAMAAVTSGHMTQTAAGKRHGIPGATLSNHLKTGSFVKRLGRKSIFSKIKLGLKRAKRGLWTKQDLRAAMGAVTRAPYDTENCCIASWNSNANSQRSFENGKSVKRMGRSRILDEVQEKILIKIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -