Basic Information

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.00038 0.048 15.5 0.5 2 23 113 137 112 137 0.96

2 5 2e-05 0.0025 19.6 0.0 1 23 144 166 144 166 0.97

3 5 0.00017 0.021 16.7 0.2 2 23 172 193 171 193 0.97

4 5 0.00013 0.016 17.1 1.9 1 23 199 222 199 222 0.94

5 5 5.1 6.3e+02 2.6 0.4 2 9 228 235 227 235 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.00038	0.048	15.5	0.5	2	23	113	137	112	137	0.96
2	5	2e-05	0.0025	19.6	0.0	1	23	144	166	144	166	0.97
3	5	0.00017	0.021	16.7	0.2	2	23	172	193	171	193	0.97
4	5	0.00013	0.016	17.1	1.9	1	23	199	222	199	222	0.94
5	5	5.1	6.3e+02	2.6	0.4	2	9	228	235	227	235	0.86

Coding Sequence: ATGGAACCTGGCGAAAATGTACTAAAAATGGAACAGTTTGTTAATATACTATGTGATAAAAGCGATGAACAAAGCAACAGTGCTTATTTTAGTTCGGTAACCGATccTTTGGAAGAATTTGGAGCTGAAAGCGCTTTAGCTACTAAACCAACATTCTATAGAATGAACAGTATCGTGTTTGCCGAACCTTTGAAAGACACTTCACATGAAAAACACTCATCAAAAGaaCATGAAGATAAAGCTGAAATTACAATCCTAGACAGTGTAACAATACGCAAGGAGACCggcaagaaatataaaaaatatcagTTCAATATTGAAGATGATTCCCCAACTAAATGTCCTCAGCTGAACTGTCTCCGTACATTCCCAACAAAGAAACGCCTCGCAGCTCACATACGTAGAGTCCACTGTGCAGACCGCAAGAGGTATATATGTGAAGAGTGTGGCCGGGGCTTCCCTGAACCTAACATGCTGAGACGACACGCTGACACGCACAGTGAGAAGACTGTGGAGTGTCCTGTTTGTGGTGTCAAGTTGAGGATGTCAACCAGCCTGTCGAAACATCTGCGTTCTCACTCCAACCAACGAACTCACGAGTGCGAAATCTGCAAGAAGAAATTCACCAGAGTCTCAAGTATGGCGACACACGTCAAGTTTGTCCACAGAGAGGGACTGTTGGAGTGTGACGAGTGTGATAAAAGGCATGTATTTGAATTTTGA
Protein Sequence: MEPGENVLKMEQFVNILCDKSDEQSNSAYFSSVTDPLEEFGAESALATKPTFYRMNSIVFAEPLKDTSHEKHSSKEHEDKAEITILDSVTIRKETGKKYKKYQFNIEDDSPTKCPQLNCLRTFPTKKRLAAHIRRVHCADRKRYICEECGRGFPEPNMLRRHADTHSEKTVECPVCGVKLRMSTSLSKHLRSHSNQRTHECEICKKKFTRVSSMATHVKFVHREGLLECDECDKRHVFEF

Sequence clustering based on sequence similarity using MMseqs2