Alit039258.2
Basic Information
- Insect
- Agrochola litura
- Gene Symbol
- -
- Assembly
- GCA_949152395.1
- Location
- OX424518.1:9298138-9305832[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.045 5.6 9.0 4.6 1 23 260 283 260 283 0.96 2 10 0.0017 0.21 13.5 1.4 2 23 291 312 290 312 0.96 3 10 0.062 7.8 8.6 0.4 3 23 349 370 347 370 0.95 4 10 0.00031 0.038 15.9 2.5 3 23 374 395 372 395 0.97 5 10 3.1e-06 0.00038 22.1 1.3 1 23 401 423 401 423 0.98 6 10 2.4 2.9e+02 3.6 0.1 2 12 433 443 432 453 0.79 7 10 0.00023 0.029 16.2 2.6 1 21 461 481 461 484 0.90 8 10 7.5e-07 9.3e-05 24.1 1.4 1 23 490 512 490 512 0.96 9 10 9e-06 0.0011 20.7 0.9 1 23 521 543 521 543 0.98 10 10 0.0035 0.44 12.5 3.0 1 23 549 572 549 572 0.96
Sequence Information
- Coding Sequence
- ATggaagaacaaataaatatatgcgTGGCATGTCTAAGCACGGACCGCCGTCTAGTCTCTGTGCATAAAATAACAACGTTGCTACATGAAATACATTTTGAAGAGCTACAAGAGTCCCCTGGTGGAATATGTTGGGAATGCCGGAGAATACTGGCAAAGTTCTATAGCTTTAAGAATAGAGCAAAGAAAGCACAGGAGACTTTATTACAAACTAGAGAGCATTTCAACATAAAATCTCTTACAACACTTTTTACAACCAATACGTCTTGTTTTTTGGTTTGCGAAACCAACTGGGACACTATACTAAAAGAAGATCAAGATTctataaaacaagaaaatgtaGAACAAAGTGAtgattttataaacaaaattgatgATAAACAAGACCAAGTTGATGAAAGTTTAGACAATACTTTAGTAGTAGATGAAAATCCAATTGAAAAACCagaaaaacacgaaaatattcATTCAGAAGCAgatgtaatagaaaataaatatgatcaTAATTTGTTTGGAAAACAAGAAAACTTTTCTCACaatgaaaaatttaatgaaGTAACTATAAATTTCGAAAGTTTTGAAACAAAACCTAACATAGATTTACCAATAAGACAAAAAAAAGATGGCGTCAGAGCTACcaaaaagatattacaaaaagtCAGAGACACAGATGATACAGAATTTGAAGAGAAGTTTGTACAAGTTGTTCTAAGTGAGGAGGAGATGGTACGACTCAGAGAAGAGAGAAGAAGTCATCCTTCGTTCAGGAAACTGCCTCATATATGTCATGGTTGTGTGCTTGGGTTCAGAAAGGAGGAGAAGTATAGAAGTCATATGAAGAAGAAGCATGATGAGagtATCGGCGACCTCATATGCGAAGTATGCAGCGTCCGATTTCCTCACAAACTAGCGTTAAATAAGCATAAAAGAAAGCACTATGTGGTCTACAGGTGTAGGCTATGCAAGTATCAGGGGAACGACTTGCGCGCGGCGGTCAATCACTGTAAGATCAAGCATGCAGCTGACAAACCTGACAGCATACACTGTTTACAGTGTTATTTTGTGGCCAAAAATGCACAAGATCTAGAAGAACACATGCAAACGGAACATCAGTTTTGGTGCAATGAATGTGGAgaaaaattcaaatcaaaacaacataTTAGAATTCATATGACTCGAACTCATGCGCCAAAACGTGCCTTCAAATGTGAtatttgtaaaaaaggttttaaaacaaaaatgcaGCTAGAATCTCACTTGGCCAGACACAATGATAATATTGCGAAGAAGCTCTCCTATTGCCAGGAATGTGATATTCAGTTCAAGACCATAATGATATATAGAATGCATTTGAAGAATACGGCTAATCATTCGGAGGGATACACATGTTCAGAatgtaataaaattttcacgGCCAAGAGCTATCTCAAGCAACATTTCGAGTTCTACCATTTAAAGAAATCGCAATATAAATGTGAAATATGCAATAAGACTTTCATGTCAAAATCGTCGTTGAAAAATCACCAAGACGCACACCTCGGCAAGACCAGACCAAGAAAATATTCCTGCAACATCTGTAGCAAGAAGTTCTTTAGTCCAGCAATGCTCCGTAGTCACCAACAAATACATTCAGATGAGCGCAAGTACATGTGTGAAAACTGTGGCGACACGTTCAAGCAATCAGCATGCTTGTACACCCACACGCGACTGAAGCACAGAGGCGGTGGGCGGAAGAGGAAGCGGGATTGTTGA
- Protein Sequence
- MEEQINICVACLSTDRRLVSVHKITTLLHEIHFEELQESPGGICWECRRILAKFYSFKNRAKKAQETLLQTREHFNIKSLTTLFTTNTSCFLVCETNWDTILKEDQDSIKQENVEQSDDFINKIDDKQDQVDESLDNTLVVDENPIEKPEKHENIHSEADVIENKYDHNLFGKQENFSHNEKFNEVTINFESFETKPNIDLPIRQKKDGVRATKKILQKVRDTDDTEFEEKFVQVVLSEEEMVRLREERRSHPSFRKLPHICHGCVLGFRKEEKYRSHMKKKHDESIGDLICEVCSVRFPHKLALNKHKRKHYVVYRCRLCKYQGNDLRAAVNHCKIKHAADKPDSIHCLQCYFVAKNAQDLEEHMQTEHQFWCNECGEKFKSKQHIRIHMTRTHAPKRAFKCDICKKGFKTKMQLESHLARHNDNIAKKLSYCQECDIQFKTIMIYRMHLKNTANHSEGYTCSECNKIFTAKSYLKQHFEFYHLKKSQYKCEICNKTFMSKSSLKNHQDAHLGKTRPRKYSCNICSKKFFSPAMLRSHQQIHSDERKYMCENCGDTFKQSACLYTHTRLKHRGGGRKRKRDC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01527686; iTF_00038163; iTF_00364395; iTF_00037243; iTF_00039276; iTF_00908255;
- 90% Identity
- -
- 80% Identity
- -