Alit044361.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agrochola litura
Gene Symbol
X-element\ORF2
Assembly
GCA_949152395.1
Location
OX424521.1:12055337-12108624[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 2.7 3.4e+02 3.4 0.9 2 23 379 400 378 400 0.90
2 17 0.0029 0.36 12.8 0.0 1 23 410 433 410 433 0.95
3 17 0.07 8.8 8.4 0.6 3 21 949 967 948 968 0.93
4 17 0.056 7 8.7 3.8 2 23 1029 1050 1028 1050 0.95
5 17 0.6 75 5.5 1.2 1 23 1062 1086 1062 1086 0.91
6 17 0.00021 0.026 16.4 0.3 2 23 1093 1116 1092 1116 0.97
7 17 0.23 28 6.8 0.3 1 23 1122 1144 1122 1144 0.93
8 17 0.0054 0.67 11.9 2.9 1 23 1150 1172 1150 1172 0.98
9 17 0.088 11 8.1 0.1 1 23 1282 1304 1282 1304 0.97
10 17 2.6 3.3e+02 3.5 7.6 1 23 1311 1333 1311 1333 0.96
11 17 0.0022 0.27 13.2 1.8 1 23 1377 1400 1377 1400 0.95
12 17 0.0011 0.14 14.1 0.4 1 23 1407 1430 1407 1430 0.98
13 17 0.024 3 9.9 0.2 2 23 1452 1474 1451 1474 0.96
14 17 0.036 4.5 9.3 5.2 3 23 1500 1521 1499 1521 0.95
15 17 0.00027 0.034 16.0 1.9 1 23 1545 1567 1545 1567 0.98
16 17 0.00019 0.024 16.5 0.1 1 23 1573 1595 1573 1595 0.97
17 17 0.00061 0.076 14.9 0.7 3 23 1603 1624 1601 1624 0.95

Sequence Information

Coding Sequence
ATGACGGAACCGCAGCCACCGCTGATCCTCTGCATGGAGAATGCGTCGGGAGAGGATGTGGCGCTTAGAATAGAACCCGATGATAACTTCCAGATGTTTCTTGATAAGGCCAGATCAATCCTAGGCTTTGACGTGGACATTAACTCAATAACCAGAAACCAGCCCGTTTCGCTATCAGAAAATGTTTATCAATTCCTAGTAAACGCCGAACAAAACTTACAAGCAGACGAACTAACACAAAACTTTGACCAGATGTTGGACACCAACGATGGAGCCAACGATTTGGTTTATATATTGGATGATGGCACACAAATTCGTGCTTCACAAATACATTTCGACAATGATGATCCGTTAGTTGATTTGACAGCTGAGAAAATACCTTTTGTGAAATACGCTGATGATGTCACTGATGAAGATGTTGATAATATTCATATTCAGGAAACTAAGAAGATTAATATTGTTGAAAGTCCTGTGTCTAGATGGTCGAGCAACAATTCTAGTCCCAAATGCAGTTTCGTTAACTCTCTACCTTTCAAATTAGTATGCAATAACACGTCTGGTTTCGAAGCACAATTCACGAAATATTTAGAAACGAATACAACGAAAACTTACGCTACCTTAAACCCAGTAACAACTCGAAATAAATCTCCAAAAAGTCTGATCAAAGATAATTTTAAGAACTATGATGATAGTTATCAAAGGAATGACAACTTGTCGTACACTCGAGAGGAGATTTTGAACATGTTCAAAGACTCCCCGATGACCTCACTGCCGTATGACCAGGGTTACAGTGAGAGGAGACATGTTCGGAAGACGGATCCTTCGAGACTTGTTCATAAGACTTGGAGTAATGCTAAAGATATCATAAACAAGGTGGAGAAGAAAATAGACAAAGAGGAGTTTGTTAAAGTCGAAATTGGTTCCGACGGTGAAATTATTACCAAGCCCATAGACACTAGGTCCAGTAGCGTCATTATTGTTAAAGATGAGAAAGAGGCTAGTTCGAGTGACGTAGAGATTGTAGAGCCAGAACCAGAGATAGATAATATCATAGACAATTTGGAGGAAGCTGATGAGGAGGTGAAAGAGTTTTTAGGGAAATATCAACGCGATGACAGTGAAGTTACTGAGTTAAAATGCAGATTCTGTGAGCAAATCTTCTCGGATCTGGCGGCAGTGACAGATCACTGTGAAACGCACAAACATGACTTAGAAGACGGTGAAGTTTTTCCGTGTCCTCTCTGTAATTATGGTTATGCAAATTTAAAATGGCTGAAAGCCCATGTGAAGGCGGCCCACGAGAAGATTGAAGCtcctaaaatattaaaagaagaaaatgaGCCTGTGAAAGAGGAGAATAAAGgtgacccaaatgagttctacgccgagttcttttcactattaaacacggaatttaatgacacttttccactaaagactaaaagtatttacacaaagttcttatttagtgattgggcgactccaggtattcgtaaaagcagggaaaaactatttgaactttatggcttaaaacaacatatgaataatacaagctttcataagtatgttgcaaaatattcaaaaacttttaaaagtgtttgcaaaatagctaaagctctttatattagcaataaaataaaatcagctgatgataaaataaaaactacctggcaagtaataaataatgaaacaggtaggaaaaaacagcgaaatactgaatttaatttagagactgcacatggccccattaactcagatatagaagtagctcaagaatttgaaaacttttttgctaatattccccttaaaactactgaagctttaaattcctcacccgcgctttctgctgctttacttagacaaaatgtgaaggcatgccctttagagtttaggtttcagcatacaaacccccaggctgttataaaagcttttaaagatcttaaaattaaatcaacagaagatctctggggaatgtctgtaaaagtctgtagatctattatcgaaaccattgcgccctatctagcttacatatttaacaccagtgtagaccaaggagtctttccggatctcatgaaacacagtaaagtagttccattgttcaaatccggtgatagtaaagaacccaacaattataggcctgtgtcaattctgccagttctcagtaaggtgtttgaaaagttgatgctcaatcaaatgttacttcactttaataaaaattccatcttgcataaacaacagtacggtttcaccaaagggcgttgtactactgacgccggtgtcaccctaataaagaacatttttaatgcctgggaagaagcacaagatgccattggaatcttttgcgacctctcgaaggcgttcgattgtgtaaaccatgagacacttctgctgaaactagagcactatgggattaggaatacagctcttgatttatttagatcatacctgaaagatagaaatgttaaagttcaggtaaacggcgtaaactcattagggtctgaaatggcaatgggcgttcctcaagATGACGAAgaaacaaatgcagcatcatcTGCTAAAGCATCATCCCCCATTGCGACTCGCACAAGGAGTTCTAAAAAGGGAGATGGCGATAGAAAagAGGATGAAAAATCGGATGATGTTAAGGCTGATTCTAATACTGAGGCGACGGAACCACCCATCATAAAAACGGAGGTAAAGCAAGAATGCCTGGACAGCAGTGAGGATGAGATTTGGATCGTTCAGACTGCTGATGCTGAAGGCACACAGGAACTGGAGAAATTACTCTGTAGTGCGAAGgtTAAAGAAGACGGACAAGATGGTGAATCTGAAAAGACACCCAATTGTTTTAATTGCGGTCAAATATTCGCGAACGCAGATGGCCTGTCAAGCCATCGCTGTAGAAGACGCAACCGTAAACGAAAGTCCAAGGACAAcattatatgtatacctactgaGGAAGACTTCTTGAAGAGAGCTCAGGGTCGCCCACGACCAACTGATACATCAGTAGACAACGATCTTCTGGCTATGCGTCGCCGTAAACGCCGCAGCCGGGAACTGAACTCCAACCCTCAGGTGGTGACCTGCCACAATTGTAACGAGTCCTTCACATCCAAAGTTAGACTGAAGTTTCATATGCAGTTCCACGAAACATCAAACCAAGCCCGGTCAGACGGGCGCTACTCCTGCTCCGAGTGTGACGACGCCACTTTCACCACGGAGACGGAACTCTTCGACCACGTGCACTTCCAGCACGACAAGCAGAAGAGATGGCAGTGTCCCGTCGAGGGCTGCGGGAAGACGTTCTTCCTCAGGGCAACCCTAACGAAACACAGTCGCACGCACACAGACACGCGTCGTTATGTGTGCGTCACATGTGACAAGAGGTTCTTAGACAAACAGACGCTAGATGAGCATGGAGTCACACATTTACAGATCAAACCCTTCCAATGCCACATATGCCTGAAACAGTTAACTCGTCGCTCGCGCTTGCGTATGCATGTGCGGGCGCACGAAGAGGAGTTGTCGCCGAGGCTCGTGTGCGTTTGTGCAGTGTGTATGAGGGCTTTTAGAGATCATCGGCATGCACAAGAGCACGCGTCAAAATCAACGGAATGTATCGAAGCGTTTGCAAACGAATTAAAGGAAGAGGCAGAAGAGGTGTCAGTACAATTATCACCCACCAGTGGACTAGTCAGACATACCGTAAAGATAGTTGAATCCCCGAAACTATCAAAGCCAATAAAACGCCAAGTGTCGAGTGAAGTGGGCGAGCCACTGCTGTCTCAGCTGGCTGATGAAGCGCGCGCTTTGATAAGGGTGGTCGAGATTGAGAAGGCGTTCCGCTGCGAGTATTGTGAAGATGTGTTCTACTTGGAGGGTGGTCTGAACAAGCACCGCGCGATACACAAGGGAGTCAAGAATCCCTTCAAATGCCACATCTGTAAAGTTAGCTTCGCTACGTATTCCAGATGCACAACCCACAAAACAACCCACGGCTTCTACAAGCGCTCACTAGCCGACGCTAAGAAACAAGCTGATGGCCCCGCAAAAGCCGATGCCGACTCCTCTGCACGCTCTGCCACTGGCATACTGGGATACGGCGACTTTCCTGTAGTCAAACACTTCTTGTGCGAGGACTGTGGCCGCTCATACCTGCACTGGACCTACCTACAAGTACACAGACGCATGAAACATGCCAACGAGAACTTTCTGTACAGATGTAACCAGTGTGAACTTACCTTTCCCAACAGCTGGGGCCTCGCGTACCATCGTAAGAAGGTGCACGGCAAGACTGGAGCTGACGACCCTGGAACCACTAACAAGAGCACCAGGGATGATTATAGGATACCATGTCGGGATTGTAGCGAGGTGTTGCCGAACAAAACAGCTTTGTACAAGCATCGTAAGAAAGAACACAGCGATGCATCTGCACGAGCTTATACTAAACCAGGCATGTATGCGAGTGCAGAGTCAAATTCTACAGGTGGGGCGTGTTCTCATTGTCACGCCACATTCACGCACGCGATTGATCTGCACAAACACGTCAAAGAGGTCCACGGTATAGACGAGTCCTGCTTATCTTGCAAAAAGACATCGACCACAGAAGGGACATGTCCGCGCCGTCCGCACACCTGTCCCGTCTGCGGACACGCCTTCCGGACGCTTTCTATGCGGAACGAACATCTGAGGGTACATACAGGGGAGCGACCCTTTCCTTGTGATGTGTGCGGAGTTGCGTTCAGGAGGTCCACAGCCATGCGGAACCACCGCCTCATCCACACGGGCGTGCGCGCGTGGGCGTGCGGCCGCTGTCCCAAGCGCTTCCGCATCCGCTCCGACCTGCGCACGCACCTGCGGCTCAAACATCCTGCTACTATTGTGGTTGTAGAGGTGGAAGGCCTTAACCCGTCGTCTGAAGAAGTACTGAAAGCTCTAGCTGGACAAAACGTTCCACACGACAAGCTTATAGATATCACGAAAATGTCCTTCACAAAGGGCTCAACGAGCGTGATCCCGACGTGCGCGCGCGCACTCACAGCTCTGAACAACGTGCCGCGCACACACGTCGCGTGTATTAAGCCTACGCCAACGCtGGAACAGTTTCAACCGGCTCGACGCGGTCGTGGCATCGCTAAAAACCCGCGACGACCCAAGATACTACAGCGAAGGGAAACGGAGCCACAGGAGAACCCTGCTTACCCCATCGTTGGTGGCGAGGtgaatatcaatcaatctgcctag
Protein Sequence
MTEPQPPLILCMENASGEDVALRIEPDDNFQMFLDKARSILGFDVDINSITRNQPVSLSENVYQFLVNAEQNLQADELTQNFDQMLDTNDGANDLVYILDDGTQIRASQIHFDNDDPLVDLTAEKIPFVKYADDVTDEDVDNIHIQETKKINIVESPVSRWSSNNSSPKCSFVNSLPFKLVCNNTSGFEAQFTKYLETNTTKTYATLNPVTTRNKSPKSLIKDNFKNYDDSYQRNDNLSYTREEILNMFKDSPMTSLPYDQGYSERRHVRKTDPSRLVHKTWSNAKDIINKVEKKIDKEEFVKVEIGSDGEIITKPIDTRSSSVIIVKDEKEASSSDVEIVEPEPEIDNIIDNLEEADEEVKEFLGKYQRDDSEVTELKCRFCEQIFSDLAAVTDHCETHKHDLEDGEVFPCPLCNYGYANLKWLKAHVKAAHEKIEAPKILKEENEPVKEENKGDPNEFYAEFFSLLNTEFNDTFPLKTKSIYTKFLFSDWATPGIRKSREKLFELYGLKQHMNNTSFHKYVAKYSKTFKSVCKIAKALYISNKIKSADDKIKTTWQVINNETGRKKQRNTEFNLETAHGPINSDIEVAQEFENFFANIPLKTTEALNSSPALSAALLRQNVKACPLEFRFQHTNPQAVIKAFKDLKIKSTEDLWGMSVKVCRSIIETIAPYLAYIFNTSVDQGVFPDLMKHSKVVPLFKSGDSKEPNNYRPVSILPVLSKVFEKLMLNQMLLHFNKNSILHKQQYGFTKGRCTTDAGVTLIKNIFNAWEEAQDAIGIFCDLSKAFDCVNHETLLLKLEHYGIRNTALDLFRSYLKDRNVKVQVNGVNSLGSEMAMGVPQDDEETNAASSAKASSPIATRTRSSKKGDGDRKEDEKSDDVKADSNTEATEPPIIKTEVKQECLDSSEDEIWIVQTADAEGTQELEKLLCSAKVKEDGQDGESEKTPNCFNCGQIFANADGLSSHRCRRRNRKRKSKDNIICIPTEEDFLKRAQGRPRPTDTSVDNDLLAMRRRKRRSRELNSNPQVVTCHNCNESFTSKVRLKFHMQFHETSNQARSDGRYSCSECDDATFTTETELFDHVHFQHDKQKRWQCPVEGCGKTFFLRATLTKHSRTHTDTRRYVCVTCDKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHVRAHEEELSPRLVCVCAVCMRAFRDHRHAQEHASKSTECIEAFANELKEEAEEVSVQLSPTSGLVRHTVKIVESPKLSKPIKRQVSSEVGEPLLSQLADEARALIRVVEIEKAFRCEYCEDVFYLEGGLNKHRAIHKGVKNPFKCHICKVSFATYSRCTTHKTTHGFYKRSLADAKKQADGPAKADADSSARSATGILGYGDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENFLYRCNQCELTFPNSWGLAYHRKKVHGKTGADDPGTTNKSTRDDYRIPCRDCSEVLPNKTALYKHRKKEHSDASARAYTKPGMYASAESNSTGGACSHCHATFTHAIDLHKHVKEVHGIDESCLSCKKTSTTEGTCPRRPHTCPVCGHAFRTLSMRNEHLRVHTGERPFPCDVCGVAFRRSTAMRNHRLIHTGVRAWACGRCPKRFRIRSDLRTHLRLKHPATIVVVEVEGLNPSSEEVLKALAGQNVPHDKLIDITKMSFTKGSTSVIPTCARALTALNNVPRTHVACIKPTPTLEQFQPARRGRGIAKNPRRPKILQRRETEPQENPAYPIVGGEVNINQSA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-