Alit025180.3
Basic Information
- Insect
- Agrochola litura
- Gene Symbol
- -
- Assembly
- GCA_949152395.1
- Location
- OX424505.1:19597507-19625497[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0039 0.48 12.4 2.6 3 23 237 257 235 257 0.97 2 13 0.28 35 6.5 9.4 1 23 263 285 263 285 0.95 3 13 0.00021 0.026 16.4 3.1 1 21 291 311 291 312 0.94 4 13 2.6 3.2e+02 3.5 1.1 8 23 311 326 310 326 0.93 5 13 0.0037 0.46 12.5 6.9 1 23 332 354 332 354 0.98 6 13 0.00074 0.093 14.6 1.5 1 23 360 382 360 382 0.97 7 13 1.5e-05 0.0019 19.9 0.9 1 23 388 410 388 410 0.97 8 13 3.4e-06 0.00042 22.0 0.1 1 23 416 438 416 438 0.98 9 13 0.00012 0.015 17.1 0.4 1 23 443 465 443 465 0.96 10 13 1.1 1.4e+02 4.6 3.6 3 19 473 489 472 495 0.90 11 13 5.9e-05 0.0073 18.1 0.4 1 23 590 612 590 612 0.97 12 13 0.00015 0.019 16.8 1.4 1 23 1003 1025 1003 1025 0.96 13 13 6.3e-05 0.0078 18.0 4.3 1 23 1035 1057 1035 1057 0.97
Sequence Information
- Coding Sequence
- atgTGTATGCCAACTCCTAACAATGTTTCGGGCTTCGGTTACTCGTGGGGCTTCACGAGTTCTGCGGACCTTACGAAGGGTGAGGTGGAAACACCAAGTAGTCTGAGCTATACTTTGGGAAATACGGTTTCCCCAGAAACGACACTGACTGTTATGTCCCACAAGACACCGCAAGTGCAAGAAAAAGTGGGTGCAGTCACGGTAGCAGTGTCAAATGCAGGTGCACAACTGACGAGGGTGGTAACTACAGGCACACCAGTCTCTGGAAGACGGATGTTTGTAGTGAATGATGCAGCTGCACATACGTTGAACAGAGTGTCACAGCAGAATCAGACCACTACTATACATACGAACTTAGCAGCTAAGCCGTTTATGACACCGATAGGTCCCATCCAGTTAACGGCGGAAGAATGCAACGAGATCTTGATGAAGCGGGCTCTTCAGGCTCAAGGCATCGCGACCCCGGTCATAGATGCTTCGCAACTGAACCACACGTTACTAAACGGTGGCTTGAAGAGTCTGGCAGAGGCGACTGCTCAGCAAACGCAGGCGGAAACCATTCAGACGACCACAGTACATCAGCATCATTTGTTACATACGAAACAGGAGCCTGGGACTACAAATAATTCGCCTAAAACGGAGCTGATGAATACTAACTCTGTGATGACGACGGCGCCGCCCGCCGCGGTGAAGGAGCGCCCTTACGGCTGCGATGAGTGCGGCAAGTCCTTCCTGCTGAAACATCATCTTACGACGCATGCCAGAGTTCATACAGGTGAGCGACCGCACGCGTGCGTTCATTGCGCCAAGACATTCGCGCACAAGCATTGCCTCAACACTCACCTCTTACTGCACTCTTCTAACCGCCCGTACCGCTGCCCCGAATGCAAGAAAACGTTCACGCTCAAACACCACCTCCTCACACACTCAcggGCGTTCGCGAGGAAGCACTGTCTCAACACGCATTTGTTGCTGCATTCGGCGGAAAGGCCGTATAGGTGTCACGAGTGTAAAATGGCGTTTACGTTGAAACATCATCTTGTTACGCATTCGAGGGTACATAGTAGAGAGCGTCCGTTCGTATGTAACGAGTGCGGTCGCGGGTTCCCTCTGAAGCGACACCTGGTGACGCACAGCAAGTACCACGCGGGCGAGCGGCCCTACGTCTGTAGCGATTGTGGCGAGAGCTTCGCGCAGAAGGAGCATCTAGTAATGCACAGTCGTTTCCACGGCTCCCTCTCCCCCTACGTGTGTCCGGACTGCGGCGTGACGTTTGCACGCAAGTTCCAACTCGTGAACCACGGGCGAGTGCACGGGAGAGTGCCTCACGCGTGTCCCGTGTGCGGCAAGGAGTTTTTACAGAAGAGAACTCTAGTCGCGCATATGAAAATACATACAGGGGAAGGTGCAGTTGCATGTTTAGAATGCGGCGAAGCCTTCAAATGCAAGTCAGAGTTGCAGCAACATTGCAAAATGACGCGGCACTGTCTACAATCCACGCAATCTCAACAACAGCAACAACAACAGCAGCAGCAACAACAACAGCAACAGCAGCAGCAACAACAACAGcaacaacaagcgcaacaaCAAGCACAACAACAGGCGCAACAACAAGCACAGCAACAAGCGCAGCAACAGCAACAACAACAGCAGCAGCAACAACAGCAACAACAAGCAACTGTGATAAAACAAGATGAATTTAAACCGCAAATTGTACAGGTTATTGGTGCCGACGGTCAAATTGTATCGGAGAAGACGACGCCGGGATATGCGTGTCCAGAGTGTGGTTCCTGTTTCAATACCAAGGAGGCGCTGTCCCTGCACGTGCGCCTGCACGCGGGCGACCGCACGTGCGTCACGGACCTGTGCGCGCTCACGGCCGCGCTGCAGCCCGGCCTCGTCGCCGCCGCGCACACGCAGCACACTATACTCTGTGTGACGCACGTGCGTCACGGACCTGTGCGCGCTCACGGCCGCGCTGCAGCCCGGCCTCGTCGCCGCCGCGCACACGCAGCACAGTACGACATACTCACTGTTACTATAGCTATACTCTGTGTGACGCACGTGCGTCACGGACCTGTGCGCGCTCACGGCCGCGCTGCAGCCCGGCCTCGTCGCCGCCGCGCACACGCAGCACAGTACGACATACTCACTGTTACTATAGCTATACTCTGTGTGACGCACGTGCGTCACGGACCTGTGCGCGCTCACGGCCGCGCTGCAGCCCGGCCTCGTCGCCGCCGCGCACACGCAGCACAGTACGACATACTCACTGTTACTATAGCTATACTCTGTGTGACGCACGTGCGTCACGGACCTGTGCGCGCTCACGGCCGCGCTGCAGCCCGGCCTCGTCGCCGCCGCGCACACGCAGCACAGTACGACATACTCACTGTTACTATAGCTATACTCTGTGTGACGCACGTGCGTCACGGACCTGTGCGCGCTCACGGCCGCGCTGCAGCCCGGCCTCGTCGCCGCCGCGCACACGCAGCACAGTACGACATACTCACTGTTACTATAGCTATACTCTGTGTGACGCACGTGCGTCACGGACCTGTGCGCGCTCACGGCCGCGCTGCAGCCCGGCCTCGTCGCCGCCGCGCACACGCAGCACAGTACGACATACTCACTGTTACTATAGCTATACTCTGTGTGACGCACGTGCGTCACGGACCTGTGCGCGCTCACGGCCGCGCTGCAGCCCGGCCTCGTCGCCGCCGCGCACACGCAGCACAGTACGACATACTCACTGTTACTATAGCTATACTCTGTGTGACGCACGTGCGTCACGGACCTGTGCGCGCTCACGGCCGCGCTGCAGCCCGGCCTCGTCGCCGCCGCGCACACGCAGCACAGTACGACATACTCACTGTTACTATAGCTATACTCTGTTTCATTATTCCTGATCAGCCTAATATACAGATAATTTCGTCGAACTCTAACAACGTTGGGCATACGCAAGTTATAGCGAATCATCAAATAACGACTCCCAGACCGAAGGTTCACTTTTGTGGCGATTGTGGGAAAGGGTTCGCGGCTAAACATGGTTTATTGGCGCATCAAAGAAGACATCCTGACGGCAGCTGTACATTACGTACCCATGTTTGCGATCAGTGTGGCAAGGCATTCTTCCAGAAGAACCACCTCATGCTGCATCAGAGACAACACATGGACCTGCCGCCCCGAAGTGTAAGCAAATACCCTAACCTTTACGCCTCTGCCCCCGCCAAGCAGAGTCAAGCCAACAACGCCGTAACGCAACAAGCCGCGCAACAGGCAGCGCAACAAGCCGCGCAACAAGCGCAACAGGTGCAACAACAAGTGGTACAACAGCAAGTGCAACAACAGCAACAACACCAGCAACAGGTGCAACATCAGAACAGTCTGGAGTTGGACCAGCAGGACCATCAGCAGGCCACGCATATACAAGTTGTAACGAACAGATCAGGTCAAGTAATCGGCAATCAGATCGTCGTGGGCTCGCTGGGCGGCACGAGGCGGCTGGTGACGCCGCTCCACATAGTCGGGAGGGATATCAAGCCGAACATCGCGCATCTCACGCACAAACACCATGCGAGGCAACATACTACCagCGGTGACGCAAAAGAAGTCGGCGGCCTGGTCCTGTCTGCAGGTCGCACAGGCCTCATAAAGTACGAGATCTCCCTCCCTCCGCCCACGTCCGTGGTGCAAGTGCAACAGCTCGACTGA
- Protein Sequence
- MCMPTPNNVSGFGYSWGFTSSADLTKGEVETPSSLSYTLGNTVSPETTLTVMSHKTPQVQEKVGAVTVAVSNAGAQLTRVVTTGTPVSGRRMFVVNDAAAHTLNRVSQQNQTTTIHTNLAAKPFMTPIGPIQLTAEECNEILMKRALQAQGIATPVIDASQLNHTLLNGGLKSLAEATAQQTQAETIQTTTVHQHHLLHTKQEPGTTNNSPKTELMNTNSVMTTAPPAAVKERPYGCDECGKSFLLKHHLTTHARVHTGERPHACVHCAKTFAHKHCLNTHLLLHSSNRPYRCPECKKTFTLKHHLLTHSRAFARKHCLNTHLLLHSAERPYRCHECKMAFTLKHHLVTHSRVHSRERPFVCNECGRGFPLKRHLVTHSKYHAGERPYVCSDCGESFAQKEHLVMHSRFHGSLSPYVCPDCGVTFARKFQLVNHGRVHGRVPHACPVCGKEFLQKRTLVAHMKIHTGEGAVACLECGEAFKCKSELQQHCKMTRHCLQSTQSQQQQQQQQQQQQQQQQQQQQQQQQAQQQAQQQAQQQAQQQAQQQQQQQQQQQQQQQATVIKQDEFKPQIVQVIGADGQIVSEKTTPGYACPECGSCFNTKEALSLHVRLHAGDRTCVTDLCALTAALQPGLVAAAHTQHTILCVTHVRHGPVRAHGRAAARPRRRRAHAAQYDILTVTIAILCVTHVRHGPVRAHGRAAARPRRRRAHAAQYDILTVTIAILCVTHVRHGPVRAHGRAAARPRRRRAHAAQYDILTVTIAILCVTHVRHGPVRAHGRAAARPRRRRAHAAQYDILTVTIAILCVTHVRHGPVRAHGRAAARPRRRRAHAAQYDILTVTIAILCVTHVRHGPVRAHGRAAARPRRRRAHAAQYDILTVTIAILCVTHVRHGPVRAHGRAAARPRRRRAHAAQYDILTVTIAILCVTHVRHGPVRAHGRAAARPRRRRAHAAQYDILTVTIAILCFIIPDQPNIQIISSNSNNVGHTQVIANHQITTPRPKVHFCGDCGKGFAAKHGLLAHQRRHPDGSCTLRTHVCDQCGKAFFQKNHLMLHQRQHMDLPPRSVSKYPNLYASAPAKQSQANNAVTQQAAQQAAQQAAQQAQQVQQQVVQQQVQQQQQHQQQVQHQNSLELDQQDHQQATHIQVVTNRSGQVIGNQIVVGSLGGTRRLVTPLHIVGRDIKPNIAHLTHKHHARQHTTSGDAKEVGGLVLSAGRTGLIKYEISLPPPTSVVQVQQLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00038080;
- 90% Identity
- -
- 80% Identity
- -