Alit040437.1
Basic Information
- Insect
- Agrochola litura
- Gene Symbol
- -
- Assembly
- GCA_949152395.1
- Location
- OX424519.1:7445336-7452818[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.013 1.6 10.7 1.0 1 23 63 86 63 86 0.95 2 23 6.2 7.8e+02 2.3 4.7 2 23 159 182 158 182 0.92 3 23 0.0026 0.32 12.9 0.4 1 23 186 208 186 208 0.98 4 23 2 2.5e+02 3.9 2.8 1 23 243 266 243 266 0.93 5 23 3e-05 0.0038 19.0 1.1 1 23 273 296 273 296 0.97 6 23 0.00025 0.031 16.1 4.9 1 23 302 324 302 324 0.97 7 23 0.047 5.8 9.0 0.5 1 23 403 426 403 426 0.95 8 23 5 6.2e+02 2.6 0.1 2 23 454 476 453 476 0.91 9 23 6.2 7.8e+02 2.3 4.7 2 23 499 522 498 522 0.92 10 23 0.0022 0.28 13.1 0.6 1 23 526 548 526 548 0.96 11 23 0.59 73 5.5 1.8 1 23 553 576 553 576 0.94 12 23 0.044 5.6 9.0 0.9 1 23 583 606 583 606 0.97 13 23 0.00055 0.069 15.0 0.7 1 23 613 636 613 636 0.97 14 23 0.00013 0.016 17.0 6.1 1 23 642 664 642 664 0.97 15 23 0.73 91 5.2 0.2 1 12 670 681 670 684 0.91 16 23 0.013 1.6 10.8 0.9 1 23 752 775 752 775 0.95 17 23 0.0016 0.2 13.6 0.4 1 23 875 897 875 897 0.97 18 23 1.1 1.4e+02 4.6 1.0 1 23 902 925 902 925 0.92 19 23 2.5 3.1e+02 3.6 2.6 1 23 932 955 932 955 0.92 20 23 0.00018 0.022 16.6 1.7 1 23 962 985 962 985 0.97 21 23 4.1e-06 0.00051 21.8 2.3 1 23 991 1013 991 1013 0.98 22 23 6.2e-05 0.0078 18.0 2.5 1 23 1019 1041 1019 1041 0.99 23 23 5.9e-06 0.00074 21.2 0.3 1 23 1047 1070 1047 1070 0.97
Sequence Information
- Coding Sequence
- ATGAAAATGAAAACAGAGCCGAGAGCTGACGTGACTGTATTACCTATTGAAgatcatataaaaataaaaccaaaaacagcGCCTCGACCAGGACAAAAGCGACTATTACACAAGCATCTAGACAATCTGAAAATAATCCTAGAATCTACTAATGCCACGATGATACTCAGACATGGAGATAAGGGATATTTATGCTGCTATTGCACGGAAGCTTTCCAAGAACCCATGAATTTGAAAGTACACACTTTGACGGACCATCAAAATTCAGAAAAAATCTATAGCACCCTTAGAGCCAGAGGACCATCTAGGTTCTTAGTGAAACTTGACATAACGAACCTAAAGTGCATGCTTTGCAGCGCCAATATAGACTCTCTCGAAGATCTATTCGTCCATCTGACAGAGAAACATAATAAGAACTTCCACACTGatatacaaaatcaaatatttccTTTCAAGTTCAATGCGAAGGAACTGAAATGCTGCCAATGTAATAATGACGTTGTTTTTGCCACGTTCAGTGCATTACACGAGCATATGCACAAACACTACCGACACTTCGTTTGTAACGAGTGTGATGCTGGATTCATAAATCATATATCATTATCCAGTCATAGAGTCACTCACACGAAAGGGACCTTCGCCTGCCGCCATTGTCCTGACGTATTCGATAACGTTTTTAAGAGAAAGAACCACGAAATGCGTAGCCATAGCAAAGCTGGCAAATTACATATATGCCATTTCTGTAATGAAGGTTTTAAGGAATATGTAACGAAAGAATTGCATCTGACTACGGTTCATGGCATTACTCCACGAAAGTATAACTGCACCGCGTGCGACAAAAGCTTTTCTTCCAATAGTTTTCTAAGCGCACATGTCAGAAGCTTCCACCTGATGGAGAAAAGTCACAAATGTTTAGAGTGTGATAAAGGGTTCTTCAGAGAAAGCCACCTAAAGAAACATGAGTTGAGTCATACAGAGGCTACAGATTTCAAATATAAACAAGAAAAAGTGGCTACAGCTACGAAAATCAAAGTAGAGCCGAAAGCTGAAGAAGTTGTAGTACCTCAGGACGagcatataaaaataaatccagAAACAGCGCCACGACCGCGCATAAAGCGACTACTACACAAGCATCTACACAATCTGAAAATAATCCTAGAATCTACTAACGCCACGATGATACACAAACATAGTGATAAGGGATATTTGTGCTGCTATTGCGCGGAAGCTTTCCAAGAACCCATGAATTTGAAAGTACACACTTTAACGGAACATCAAAATGCAGAAAAGTTCTATGGAAACATTAAAGCCAGAGGACCATCTAGGTTCTTAGTCAAACTTGACATAACAAACCTAAAATGCACGCTTTGCAGCGCCAATATAGATTCTCTTGAAGATCTATTCGTCCATCTGACGGAGAAACATAATAAGCACTTCCACACTGatatacaaaatcaaatatttccTTTCAAGTTCAATACGAAGGAACTAAAATGCTGCCAATGTAATAATGACGTTGTTTTCGCCACGTTCAGCGCATTACACGAGCATATGCACAAACACTACCGATACTTCGTTTGTAACGAGTGTGATGCTGGATTCATCAATCATGAAACATTATCCAAACATAACGTCACTCACACGAAAGGATCATTCGTCTGCCGACATTGTCCTGTAGTATTCGACAATGTATTCAAGAGAAGAAACCACGAAATGCGCAGCCATACTCACACTGACAAATCATACATATGTCATTTATGTAATGAGGGTTTTAAAGAATATGTAACGAAGGAATTACATATGTCTACAGCTCATGGCGTTGCTCCACGAAAGTATAACTGCACCGCGTGTGAGAGGAGCTTTCCTTCCAATAGTTTTCTAAGCGCACATGTCAGACGCTTCCACCTGATGGAGAAAAGTCACAAATGTTCAGAGTGCGACAGAGCGTTCTTCAGAGAAAGCCACCTAAAGAAACATAAGTTGAGTCATACAGGAGCTAAAGATTTCAAATGTGAAGTCTGTTCAAAACAATTTGCCAATATACAAGAAAACGTGGCTACAGCTAAGGAAATCAAAATGGATCCGAAAGATGAAGAAACTGTAGAACCTAAGGAAGagcatataaaaataaatccagAGACAGCGCCTCGACCACGCATGAAGCGACTACTACACAAGCATCTACACAATCTAAAAATAATCCTAGAATCTACTAACGCCACGATGATACACAAACATGGAGATAATGGATATTTGTGCTGCTATTGCACGGAAGCTTTCCAAGAACCCATGAATTTGAAAGTACACACTTTAACGGAACATCAAAATGTAGAAAAGTTCTATGGAAACATTATAGCTAATGGACCATCTAGGTTCTTAGTCAAACTTGACATCACGAATCTGAAATGCATGCTTTGCAGCGCCAATATAGATTCTCTCGAAGATCTATTAGTCCATCTGACAGAGAAACATAACAAGAACTTCCACActgatataaaaaatcaaatatttcctTTCAAGTTCAATACGAAGCAGCTGAAATGCTGCCAATGTACAAATGACGTCGTTTTTGTCACATTCCGAGCATTACACGAACATATGCACAAACATTACCGATATTTCATTTGCAACGAGTGTGATGCTGGATTCATCAATCATGTATCACTATCCAGACATTCGGCTACTCACACGAAAGGAACCTTCGTCTGCCGACATTGTCCCTTTGAATTCGACAACGTGGTCACGAGAATTAACCACGAAATGCGCAGTCATACTCACACTGGCAAATCACATATATGCCATTTCTGTAATGAAGGTTTTAAAGAGTATATTACGAAGGAATTGCACCTGTCTACGGTTCATGGTGTTACCCCACGGCAATATAACTGCACCGCGTGTGACAGGAGCTTTCCTACTCATAGTGTTCTTAGAGTACATATCAGGCGCTTCCATCTGATGGAAAAACGACACAAATGTTCCGAGTGCAATAGAGCGTTCTTCAGGAATGGTGACCTAAAGAAACATATGTTAATTCATACAGGGGTTAAAGATTTTAAATGTGAAGTCTGTTCAAAGTATTTCGCCAAGAGATTTACTCTAACTCAGCATATGAAGATTCATAACAATGATAAGCGTTTCCAATGTACATTATGTGATCAGGCGTTTGTGCAGAAACCTAGCTTGAACTGGCATATGAGGGCAAAGCACGCTGATGATTGTTCTTCGTAA
- Protein Sequence
- MKMKTEPRADVTVLPIEDHIKIKPKTAPRPGQKRLLHKHLDNLKIILESTNATMILRHGDKGYLCCYCTEAFQEPMNLKVHTLTDHQNSEKIYSTLRARGPSRFLVKLDITNLKCMLCSANIDSLEDLFVHLTEKHNKNFHTDIQNQIFPFKFNAKELKCCQCNNDVVFATFSALHEHMHKHYRHFVCNECDAGFINHISLSSHRVTHTKGTFACRHCPDVFDNVFKRKNHEMRSHSKAGKLHICHFCNEGFKEYVTKELHLTTVHGITPRKYNCTACDKSFSSNSFLSAHVRSFHLMEKSHKCLECDKGFFRESHLKKHELSHTEATDFKYKQEKVATATKIKVEPKAEEVVVPQDEHIKINPETAPRPRIKRLLHKHLHNLKIILESTNATMIHKHSDKGYLCCYCAEAFQEPMNLKVHTLTEHQNAEKFYGNIKARGPSRFLVKLDITNLKCTLCSANIDSLEDLFVHLTEKHNKHFHTDIQNQIFPFKFNTKELKCCQCNNDVVFATFSALHEHMHKHYRYFVCNECDAGFINHETLSKHNVTHTKGSFVCRHCPVVFDNVFKRRNHEMRSHTHTDKSYICHLCNEGFKEYVTKELHMSTAHGVAPRKYNCTACERSFPSNSFLSAHVRRFHLMEKSHKCSECDRAFFRESHLKKHKLSHTGAKDFKCEVCSKQFANIQENVATAKEIKMDPKDEETVEPKEEHIKINPETAPRPRMKRLLHKHLHNLKIILESTNATMIHKHGDNGYLCCYCTEAFQEPMNLKVHTLTEHQNVEKFYGNIIANGPSRFLVKLDITNLKCMLCSANIDSLEDLLVHLTEKHNKNFHTDIKNQIFPFKFNTKQLKCCQCTNDVVFVTFRALHEHMHKHYRYFICNECDAGFINHVSLSRHSATHTKGTFVCRHCPFEFDNVVTRINHEMRSHTHTGKSHICHFCNEGFKEYITKELHLSTVHGVTPRQYNCTACDRSFPTHSVLRVHIRRFHLMEKRHKCSECNRAFFRNGDLKKHMLIHTGVKDFKCEVCSKYFAKRFTLTQHMKIHNNDKRFQCTLCDQAFVQKPSLNWHMRAKHADDCSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00667778;
- 90% Identity
- -
- 80% Identity
- -