Basic Information

Insect: Agrochola litura
Gene Symbol: -
Assembly: GCA_949152395.1
Location: OX424506.1:19730396-19740184[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0016 0.21 13.6 3.1 1 23 85 107 85 107 0.94

2 12 0.0029 0.36 12.8 0.4 2 23 113 134 112 134 0.96

3 12 8.8e-05 0.011 17.6 4.9 2 23 178 199 177 199 0.97

4 12 1.3e-05 0.0016 20.2 1.3 1 23 208 230 208 230 0.96

5 12 2.6e-05 0.0032 19.2 3.8 1 23 236 258 236 258 0.97

6 12 6.9e-06 0.00086 21.0 3.4 1 23 264 286 264 286 0.99

7 12 2.8e-08 3.5e-06 28.5 1.0 1 23 292 314 292 314 0.95

8 12 1.8e-05 0.0022 19.8 1.7 1 23 320 342 320 342 0.97

9 12 4.7e-06 0.00058 21.6 0.5 1 23 348 370 348 370 0.98

10 12 0.0032 0.4 12.6 6.4 1 23 376 398 376 398 0.97

11 12 1.7e-06 0.00021 23.0 2.1 1 23 404 426 404 426 0.98

12 12 0.00046 0.058 15.3 0.5 1 20 432 451 432 454 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0016	0.21	13.6	3.1	1	23	85	107	85	107	0.94
2	12	0.0029	0.36	12.8	0.4	2	23	113	134	112	134	0.96
3	12	8.8e-05	0.011	17.6	4.9	2	23	178	199	177	199	0.97
4	12	1.3e-05	0.0016	20.2	1.3	1	23	208	230	208	230	0.96
5	12	2.6e-05	0.0032	19.2	3.8	1	23	236	258	236	258	0.97
6	12	6.9e-06	0.00086	21.0	3.4	1	23	264	286	264	286	0.99
7	12	2.8e-08	3.5e-06	28.5	1.0	1	23	292	314	292	314	0.95
8	12	1.8e-05	0.0022	19.8	1.7	1	23	320	342	320	342	0.97
9	12	4.7e-06	0.00058	21.6	0.5	1	23	348	370	348	370	0.98
10	12	0.0032	0.4	12.6	6.4	1	23	376	398	376	398	0.97
11	12	1.7e-06	0.00021	23.0	2.1	1	23	404	426	404	426	0.98
12	12	0.00046	0.058	15.3	0.5	1	20	432	451	432	454	0.94

Sequence Information

Coding Sequence: atgGTCTCCAGGGAGGATGGGTTACCACAGCACCTTTGTGATGGCTGTGTCAAGGTGCTGCAACTTGCGTACTCATTCCGTAAGCAAGCGGCGAAGGCACAAGATGAGTTTAAAAGACTCCTACAAACAAATGTAAAAACAGAACCTCAAGAAGTTGACCTCAAAATGGAGCATGATCATGATTATTTTGCAACATATGAAGATTTCACTTTCAATCCTGATTTTTCCAAAACTGAGATTGATGATAAAGAATATACATGCACTAAATGTAATAAACAGTTCACAAAAGAGAAGAAATACTTGAAACATTTAGTAGCACACGAGAATTTATCACTAGAATGTGATATTTGTAAGAAATTATATCCTAACCAGACATTGTTGGATAAACACAGAGCCAAGCATGAAATGAATATGTGTTTTGTTAGTGATCAAAGTTTTACGAGTGAGCCATATTTACTGGAAGATAACATGGTAGACCACACTGAGGAAGTGGAAGTAAAAAATGAAGATGATACACCATCACTTGAATTACAATGTACACATTGTAGTCTTACATTTACAAAGCAGAGATCACTCTCAATGCACATGAGAAAACATAGAGATAAAAATGAGAAGAAAGAATTCATTTGTGACACTTGCGGGAAGACGTTTGCCATGAAACATTTGTTGAAGCGGCACGTGGTGATGCACAGCGAAGTAAAACCACACAAATGTGAGAAATGTTCGAAGACATACGCCAGGCGTGACCAGCTGATGTCTCACATGTACTCGCATAAAGAACACAAGCCTTATGTATGTGAATACTGCAAGAAAAGTTTTGCCCAAATGTGTAGTCTAAAAGACCATCTCCGCACCCACACTGGTGAGACGCCATTCCTGTGTTCAGAGTGTGGCAAGGGATTCTCCAACAATTCCAACCTGAGGCAGCACATGATGAGGCATACCGGAGTCAAGCCGTATGCTTGCAACTTGTGCCCTAAGACATTCTGTACTAAAGGTCAGATGAGGTCGCACGTGGCCACACATACAGGGGAACACCCTTACAAATGTGAGGAGTGTGGCGCCGCCTTCACCAAGCAGAACTCCCTAAAGAAACACTCCATGATACATCTTGCTATAAGGCCGTTTGCCTGCGAGACTTGTAATATGAGaTTCACCTGCAAAGACCACCTGAAGCGTCACACCAGAATCCATACTGGCGAGAAACCTTACAAGTGCAAGTATTGTGAGCGAGCGTTCTCGCAGAGTAACGACTTAGTGAAACACACGCGCCAGCACATCGGGCAGAACATATACCAATGCACAATATGCGGCTCCCGATTCCGTCTACTATCAGAACTAAAGCAACATTACCCAGTCCACTTCGCAAACGGCGAGGAGGCCAATGACCCACAAATCACTACCAAAGATTCCACAGAACCAATCAACAACGAAGGTCCAGAACAACTCCCTATGTTAGAACTTAAACCGCCAGAATTTAACCTTTTGACCTTCAAAAATGATAAAGATCTTCCTCCCCTTATCTTAAAACCGCCGGAGGTTGATAAGGATCTTCAGATGTTGACTTTAAAGCCTCCAGAAAGTGTTGAGAGCGATCCCGTGCGTTCTTGCGCGGATTCGAACAGAATCGTTATCACTATCAACAGTTGTGATACGAATGGCATTGTTAATGGCATTACTATTAAACTGCCGCCCAAAGAGAGCTAA
Protein Sequence: MVSREDGLPQHLCDGCVKVLQLAYSFRKQAAKAQDEFKRLLQTNVKTEPQEVDLKMEHDHDYFATYEDFTFNPDFSKTEIDDKEYTCTKCNKQFTKEKKYLKHLVAHENLSLECDICKKLYPNQTLLDKHRAKHEMNMCFVSDQSFTSEPYLLEDNMVDHTEEVEVKNEDDTPSLELQCTHCSLTFTKQRSLSMHMRKHRDKNEKKEFICDTCGKTFAMKHLLKRHVVMHSEVKPHKCEKCSKTYARRDQLMSHMYSHKEHKPYVCEYCKKSFAQMCSLKDHLRTHTGETPFLCSECGKGFSNNSNLRQHMMRHTGVKPYACNLCPKTFCTKGQMRSHVATHTGEHPYKCEECGAAFTKQNSLKKHSMIHLAIRPFACETCNMRFTCKDHLKRHTRIHTGEKPYKCKYCERAFSQSNDLVKHTRQHIGQNIYQCTICGSRFRLLSELKQHYPVHFANGEEANDPQITTKDSTEPINNEGPEQLPMLELKPPEFNLLTFKNDKDLPPLILKPPEVDKDLQMLTLKPPESVESDPVRSCADSNRIVITINSCDTNGIVNGITIKLPPKES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00623390;
90% Identity: iTF_00123581;
80% Identity: -