Basic Information

Insect: Agrochola litura
Gene Symbol: -
Assembly: GCA_949152395.1
Location: OX424511.1:6883331-6907129[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 5.4e-05 0.0067 18.2 6.9 1 23 192 214 192 214 0.98

2 13 8.4e-07 0.00011 23.9 0.2 3 23 228 248 227 248 0.98

3 13 8.4e-05 0.01 17.6 2.0 2 23 257 278 257 278 0.98

4 13 0.00034 0.042 15.7 1.5 3 23 286 306 284 306 0.95

5 13 1.2e-05 0.0015 20.2 1.5 1 23 312 334 312 334 0.97

6 13 2e-05 0.0025 19.6 8.6 2 23 341 362 340 362 0.97

7 13 2.1e-05 0.0026 19.5 0.7 1 23 368 390 368 390 0.98

8 13 2e-06 0.00025 22.7 1.1 1 23 396 418 396 418 0.99

9 13 0.00078 0.097 14.6 2.8 1 23 424 446 424 446 0.98

10 13 0.0035 0.43 12.5 1.3 1 23 452 474 452 474 0.97

11 13 2.2e-06 0.00028 22.6 0.7 1 23 480 502 480 502 0.98

12 13 5.9e-06 0.00074 21.2 0.9 1 23 508 530 508 530 0.99

13 13 0.00022 0.027 16.3 2.6 1 23 605 627 605 627 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	5.4e-05	0.0067	18.2	6.9	1	23	192	214	192	214	0.98
2	13	8.4e-07	0.00011	23.9	0.2	3	23	228	248	227	248	0.98
3	13	8.4e-05	0.01	17.6	2.0	2	23	257	278	257	278	0.98
4	13	0.00034	0.042	15.7	1.5	3	23	286	306	284	306	0.95
5	13	1.2e-05	0.0015	20.2	1.5	1	23	312	334	312	334	0.97
6	13	2e-05	0.0025	19.6	8.6	2	23	341	362	340	362	0.97
7	13	2.1e-05	0.0026	19.5	0.7	1	23	368	390	368	390	0.98
8	13	2e-06	0.00025	22.7	1.1	1	23	396	418	396	418	0.99
9	13	0.00078	0.097	14.6	2.8	1	23	424	446	424	446	0.98
10	13	0.0035	0.43	12.5	1.3	1	23	452	474	452	474	0.97
11	13	2.2e-06	0.00028	22.6	0.7	1	23	480	502	480	502	0.98
12	13	5.9e-06	0.00074	21.2	0.9	1	23	508	530	508	530	0.99
13	13	0.00022	0.027	16.3	2.6	1	23	605	627	605	627	0.99

Sequence Information

Coding Sequence: ATGGCTGCTCCCAATAAACCTTTGAAATTCGACAAAATATGTCGCGCTTGTTTAGAGATAAAAAAGGACATGAGACCCCTATTTGATCAACTCACAGCGACAATGCTGATGGGCATATCGAAAGTGCAGGTGGCAGTGGGCGACGGTCTACCTCCCCAGCTGTGTCTCCAGTGTGTGCACCAGATCTCGAGGTGCCATGCCTTCAAGGACCTAGTGGAGAGGAATGACGTCACGCTGCGAGAGCATGCCTCGCGGATGGCAGAAGAGGCCTTTAAGAGGGAAAGGGAAGAGAAAGAGAAGCTGCTAACCCTGAACTGCACGGAGCCGTACATGCAGTACATGGAGGTCCCCCTTACCAACACGAGTCAGATCCTGGATGGGTTCTTCACGGCCACGACGACAGACCAGCCGCCTGCGGATACACCTGACGCAGAACATAAACAAGACTTCGATGTTGAAAAGCTGGACCCAGAACTCGTCCAATTGAAAGACAAAGAAGGTCTTAACTCTGACGAGGAGAACTATCTCCAACTGGTTCTATTTCAAGCGACCTCCACGGTGTCCCCAGGCAGACACGTATGCAACCTCTGTCACAAGGAATTCAAGCATGCACGCTGGCTGAAGCAACACATGCGATCTCATACCAACTGGATTAAGGCGAACTGTAAGAAGCCGCCCATGTGCCCCATCTGTGATAGGACTTTTAAGGGCCCAGGCATGCTCAAGATGCACATGCGTACACACGAGCAGCGTCCAGCAAAGCAGCCAACATGCTCGGTGTGCCAGCGAACGTTCCCGAGCAAGACGTTGCTATACCGACACAGACAGACGCACTTCGAGCAAAAGACGCACCTCTGCTCTGTTTGTGACAAGCGCTTCTACAGCGGATATGCTCTGCGCTCGCACATGGCGCGGCACCGCGGCGAGCGGCCCTACATCTGCACGACGTGCAACAAGAGCTTCTATAACCCGACTGATCTGAAGGTCCACTTCCGCCTGCACACCGGCGAGAAGCCGCTGAAGTGTACGGAGTGCAACAAGACGTTCAGGCGACACTCGACCTTATGCCAACACATGAAGAAACACCGCGGCATACGCAACCACGTGTGCAATGTCTGCAACAAGGGATTCTATGAGGTGTCCAAGCTGAACGCGCATATGAGGGTGCACACTGGCGAGCGTCCCTACGAGTGCCAGTACTGCGAGCGCCGCTTCGCGCAGCAGTCGGCTCTGATCTACCACCGGCGCACGCACACGGGCGAGAAGCCCTACTGCTGCAAGATATGCTCCGCGCGCTTCACCACCTCCTCCGCCAGGAACAACCATATGGTCACACATACTGGGAACAAGAGGTTCGTCTGCCCAGTCTGCCTCAAAGGCTGCACATCGCGCACAGAACTCCGCGTTCACTCAAGCAAGCATACAGGAGAGAAACTATTCGAGTGTAACCAATGCGGACAGCGGTTCAGCTCGGCGTCTTACCTCGCCGTGCATCGCCGCTACCACACCGGCGAGAAGAAGTATCAGTGTTCTGTCTGCGGGAAGgGCTACATAGAATCGAGTTCATTCAAGAAGCACGTAAAGACACACGCGAAGTCGGAGACGGAGTCGTCTACGTCGGAGAACAGTGCGGAGGTTCCGCAGGGCAAGGAGCCCTGCCTCGCCGACCATCAGACCGTCACCGTCACTGAGGACTTGCCTGATGCGCCGAACCAAGTTCAACCCCAAGTCCAAATCCAAGTGCAAGACACGCAACAGGTCCTGCAGGTCCAGGGGCAGGTGGAACGCTCCCCGCAGCAGAAGATCACGCGCTACAAGTGTGGGCTGTGCGTCAAGACGTACATGTATCTACATAACTTGAAGAAACACATGCTGGTGCATGAACAAgaAAACGGCCGTAATACGGAGCCAATCATATTCcttcaacaacaacaaccacagcagcagcaacaacagcagcagcagcaacaacagcagcagcagcaacaacaacaacagcagCAGCAGCAACAACAGCAGCAGCAGCAACAACAACAGCAGCAGCATCAACAGCGCCAgcagcaacaacaacaacaagtaCAACAGCAACACCAGCAGCAACAACATCAGTTGCAACAACAGCATCAAGTACAGCAAGTTCAAGTACAACAAGTGCAACAACAAGTGCAGCAACAGGTGCAACATCACCAGCAACAGCAACAGTTGCAGCAACAAGCGGTGCTGCAGGTCGGCAACGTGCAGCAGCTCGCCGTGCCCATACACGCGCAGCATGTGCAGCAGGGCATCACCGTGTCCGGGGTACAGAGCCAGCACCCATACCCGGTGATCTCGTCGGTGCAGTCGCTGCAGCTGCAGCAAACACAACAGGTTAACACGCAACAGCCACAGCAGCTTCAAGTACAAACCATACAGATACATCCGCAACATCAACCGATACAAATACATGCGGTGGGCGTGCAACAGGTGCAACAGCAACAGCTGCACGTGGCCACCTCCTCGTGCCAGACCATGCTGCCCAATATATTGCAGCTGCAACCAGCTACGGTCGCAGTGTCTGGGCTATCTCAACAGGAGCTGGGCGGCGTGACGCACCGGATCATTCTGCAGCCACAGCCTTCCGCCACACACCCCGCTGTCTACACCATCCACCATTGA
Protein Sequence: MAAPNKPLKFDKICRACLEIKKDMRPLFDQLTATMLMGISKVQVAVGDGLPPQLCLQCVHQISRCHAFKDLVERNDVTLREHASRMAEEAFKREREEKEKLLTLNCTEPYMQYMEVPLTNTSQILDGFFTATTTDQPPADTPDAEHKQDFDVEKLDPELVQLKDKEGLNSDEENYLQLVLFQATSTVSPGRHVCNLCHKEFKHARWLKQHMRSHTNWIKANCKKPPMCPICDRTFKGPGMLKMHMRTHEQRPAKQPTCSVCQRTFPSKTLLYRHRQTHFEQKTHLCSVCDKRFYSGYALRSHMARHRGERPYICTTCNKSFYNPTDLKVHFRLHTGEKPLKCTECNKTFRRHSTLCQHMKKHRGIRNHVCNVCNKGFYEVSKLNAHMRVHTGERPYECQYCERRFAQQSALIYHRRTHTGEKPYCCKICSARFTTSSARNNHMVTHTGNKRFVCPVCLKGCTSRTELRVHSSKHTGEKLFECNQCGQRFSSASYLAVHRRYHTGEKKYQCSVCGKGYIESSSFKKHVKTHAKSETESSTSENSAEVPQGKEPCLADHQTVTVTEDLPDAPNQVQPQVQIQVQDTQQVLQVQGQVERSPQQKITRYKCGLCVKTYMYLHNLKKHMLVHEQENGRNTEPIIFLQQQQPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHQQRQQQQQQQVQQQHQQQQHQLQQQHQVQQVQVQQVQQQVQQQVQHHQQQQQLQQQAVLQVGNVQQLAVPIHAQHVQQGITVSGVQSQHPYPVISSVQSLQLQQTQQVNTQQPQQLQVQTIQIHPQHQPIQIHAVGVQQVQQQQLHVATSSCQTMLPNILQLQPATVAVSGLSQQELGGVTHRIILQPQPSATHPAVYTIHH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01094252;
90% Identity: iTF_00906378;
80% Identity: -