Alit014250.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agrochola litura
Gene Symbol
-
Assembly
GCA_949152395.1
Location
OX424498.1:8760486-8774460[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 9.8e-05 0.012 17.4 2.2 1 23 430 452 430 452 0.97
2 20 0.0051 0.63 12.0 0.6 1 20 458 477 458 480 0.94
3 20 2.6e-05 0.0032 19.2 5.6 1 23 499 521 499 521 0.98
4 20 0.00012 0.015 17.1 4.1 1 23 527 549 527 549 0.99
5 20 4.5e-05 0.0056 18.5 5.3 1 23 555 577 555 577 0.97
6 20 1e-05 0.0013 20.5 7.4 1 23 583 605 583 605 0.97
7 20 8.7e-07 0.00011 23.9 2.9 1 23 611 633 611 633 0.97
8 20 0.00012 0.015 17.1 6.7 1 23 639 661 639 661 0.97
9 20 0.00012 0.015 17.1 6.5 1 23 667 689 667 689 0.97
10 20 5.9e-07 7.4e-05 24.4 1.9 1 23 695 717 695 717 0.98
11 20 1.2e-05 0.0015 20.3 7.7 1 23 723 745 723 745 0.98
12 20 3.1e-05 0.0038 19.0 6.6 1 23 751 773 751 773 0.98
13 20 2.4e-06 0.0003 22.5 4.2 1 23 779 801 779 801 0.98
14 20 8.1e-06 0.001 20.8 5.0 1 23 807 829 807 829 0.96
15 20 2.6e-06 0.00033 22.4 5.0 1 23 835 857 835 857 0.98
16 20 3.7e-06 0.00046 21.9 6.0 1 23 863 885 863 885 0.98
17 20 7.2e-05 0.009 17.8 7.9 1 23 891 913 891 913 0.97
18 20 3e-05 0.0037 19.0 7.7 1 23 919 941 919 941 0.98
19 20 0.00089 0.11 14.4 0.3 1 23 948 970 948 970 0.96
20 20 0.38 48 6.1 4.9 1 23 982 1004 982 1004 0.99

Sequence Information

Coding Sequence
ATGAATCAGGATCACCATAATATGAATACGGGTGGTGGCCAGCCTCCGGGAAGTTCTGAGTCACAGGGCCAAAGAATTCAGGCCACCCAACAGCAGCAGCAGAATAACTTGCCTGCCACGACATCTGCCACTGATTTGCGAGTGAACTCAGCCGCAGTGAACGTTGCTTTGTCTAGTGTCGCGAAATATTGGGTGTTTACAAATTTATTCCCCGGACCGATACCACAAGTGTCTGTGTATGGATTGCCTGCTGGTGCCAGGATTGAAAATGGAAAGCCTGTCCAGGATCTTGGTCAAGCTCATGCCAGTATTCTGAATGGGGACCCAAATATTATACTCGGGCATCATACGGGTCAGTCCCAAGTTACAGTATCTGCTCCTGGTGGTCAGCAGATACCTGTCTCACAGATCATCGCTACACAGTCTGGACAAACTCATGAAGCACTTGTGGCCCATAGTCAGCAGCAAGCTGAGCTGGTGGCCCAGGGCTCAGGCAACAATGGCCAGGTGTCAGTTAGTGCCGGCCAGGCCACTCACCAGCAGGTACCCAATAATCGGGTCGAGTTTGTACAACACCATAACATTGATATGGTAAATCACGTGGGCCACCATTCTCAACAACACATAATGCAGCAGCAACTGATGGCGCAGGCGCGGCCAGATCACAACAACCAACAGATCCAATTGACGGTAAGCGAAGACGGCATAGTAACGGTGGTGGAACCGGCTGGCACAAAGATGGTCGACAAGGAGGAACTCCACGAGGCCATCAAGATGCCCAACGACCACACGCTCACCGTTCACCAGCTGCAGCAGATAGTGGGACAACAGGTAATAGACAGCGTAGTACGCATAGAGCAAGCGACCGGTGAGCCAGCGAACATCCTTGTGACCCACAATCCTGATGGTACGACCTCCATCGAAGCCAGTGCCGCCGACCCTCTGATTGTCAAGGACGAGAAGAGTGCTAACAAAATTGAGACCGCACAGTTCGCTATACCTGCTGAGATAAAGGACATAAAGGGAATTGACTTGAAGAGTGTAGGAGCCATGGGTATGGAAGGTGCAGTAGTGAAGATTTCAGCCGGCGCGTCAGAACACGACCTCCACGCGATGTATAAAGTCAATGTAGAAGATCTGTCACAACTGCTTGCTTACCATGAAGTCTTCGGAAAACTAAATTCGGATGGCCAGCAACAGCAGGCAAAGGTAATAAGCGAGGTGGAAGTAGAAGTGGAAGCTGGCACCAGCGCAGCTATGTCTGAAGCAGAATCTTCGCCCGGCCACCACTCATGTGATATCTGCGGAAAAATATTCCAGTTCCGATACCAACTTATTGTTCAtagGCGTTATCACGGCGAAAGTAAACCATTCACGTGTCAAGTTTGTGGATCCGCATTTGCAAATCCTGTTGAATTATCGAGGCATGGAAAATGCCATCTTGCTGGAGACCCGAACGAAAGACACGCCAAGAGAATGGCACAAGATAAGCCATACGCTTGCACAACTTGCCACAAAACGTTCTCCCGTAAAGAACATTTGGACAATCACGTTCGAAGTCATACTGGAGAAACTCCGTACAGATGCGAATTCTGCGCGAAGACTTTCACCCGCAAGGAGCACATGGTCAACCACGTACGAAAACATACGGGCGAAACTCCGCACCGATGTGATATTTGCAAGAAGAGTTTCACCAGGAAAGAGCACTTCATGAACCATGTTATGTGGCACACAGGTGAAACGCCGCACCATTGTACAATATGCGGCAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGCGATCTCACACGAACGATACTCCGTTCAGATGCGAACTGTGCGGCAAGTCGTTCACGAGAAAGGAACACTTCACCAATCACATACTGTGGCATACGGGAGAAACCCCTCACCGCTGCGACTTCTGTTCCAAAACGTTTACACGTAAGGAGCATCTCCTGAACCACGTCCGTCAGCACACGGGCGAGTCGCCTCACCGCTGCAACTTCTGCAGCAAGTCATTCACACGGCGAGAACACCTTGTCAACCACGTGCGACAACATACTGGTGAAACGCCCTTCCAGTGCGGATACTGTCCTAAAGCGTTCACAAGGAAGGATCACCTCGTGAACCACGTCCGTCAGCATACAGGCGAATCCCCGCACAAGTGCTCGTATTGCACAAAATCCTTCACTCGCAAGGAACACCTGACGAATCATGTGCGACAGCACACGGGCGAGTCTCCTCACCGATGTACTTACTGCGCCAAGTCCTTCACAAGGAAGGAACACCTCACCAACCACGTTAGACAGCACACGGGAGAAACGCCACACAAGTGTACGTACTGCCCGCGGGCCTTCGCGCGCAAGGAGCATCTCAACAACCACATCCGACAGCACACCGGCGTCACGCCGCACGCTTGCTCCTACTGCAGCAAGAGTTTCACCAGGAAGGAACATCTCGTTAACCATATTCGGCAACACACGGGCGAGACTCCGTTCAAGTGTACGTACTGTTCAAAGTCGTTCTCTCGTAAGGAGCACCTCACGAACCACGTGAACCTTCACACAGGAGAAACGCCCCACAAATGTCCCTTCTGCACAAAAACATTTTCCAGAAAGGAACACTTAACCAACCACGTCagGATTCACACGGGCGAGTCTCCGCATCGCTGCGACTTCTGCCAGAAGACGTTTACTCGTAAGGAGCACTTGACGAATCATCTGAAGCAGCATACCGGCGATACCGCACACGTCTGCAAGGTGTGCTCCAAGCACTTCACCAGGAAAGAACATCTTGTCACACACATGAGGTCACACAGTTGTGGCGAGCGTCCATTCAGTTGCGGCGAGTGCGGGAAGTCTTTCCCGTTGAAAGGCAACCTATTATTCCATGAACGATCACATGCCAAGAACAATGCTAATGCTGCCAATAAACCGTACCGATGTGAAGTCTGCTCCAAGGAATTCCTCTGTAAAGGTCATTTGGTGTCTCACCGACGCACACACGCGGAATGGGTGGAAGGTGCTGCGACTGGCGAAGCACCCGCTGAAACAGAAGATTGTACTGATAATAAGTGTATCAAAGTTGAGTCAGAACGAACTGAAAGAAAACATGAAGTCAGGACGACAGTCGAAACGAGACCAGCTGAGACCAATGTCGCACAAAGTCAGCCAAACACAGCTACTGTGATGATAACCAATAATCAACAAGTGCGCGCGGCGACTGTGAGCACGGTGGGTGCGGTGGGCGCAGTGGGCCCTGTGGGCGCGGTGGGCGCGGTGGGCGCAGTGAGCGCGGTGGGCGCGGGCGCGACGCCCACGTTCGCGCCGCACCACGCCGGCGCCAACATCGCGCACCACCCCGTGAGCGTGAACTACTAG
Protein Sequence
MNQDHHNMNTGGGQPPGSSESQGQRIQATQQQQQNNLPATTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPAGARIENGKPVQDLGQAHASILNGDPNIILGHHTGQSQVTVSAPGGQQIPVSQIIATQSGQTHEALVAHSQQQAELVAQGSGNNGQVSVSAGQATHQQVPNNRVEFVQHHNIDMVNHVGHHSQQHIMQQQLMAQARPDHNNQQIQLTVSEDGIVTVVEPAGTKMVDKEELHEAIKMPNDHTLTVHQLQQIVGQQVIDSVVRIEQATGEPANILVTHNPDGTTSIEASAADPLIVKDEKSANKIETAQFAIPAEIKDIKGIDLKSVGAMGMEGAVVKISAGASEHDLHAMYKVNVEDLSQLLAYHEVFGKLNSDGQQQQAKVISEVEVEVEAGTSAAMSEAESSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSRHGKCHLAGDPNERHAKRMAQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHVRQHTGETPHKCTYCPRAFARKEHLNNHIRQHTGVTPHACSYCSKSFTRKEHLVNHIRQHTGETPFKCTYCSKSFSRKEHLTNHVNLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCDFCQKTFTRKEHLTNHLKQHTGDTAHVCKVCSKHFTRKEHLVTHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHAKNNANAANKPYRCEVCSKEFLCKGHLVSHRRTHAEWVEGAATGEAPAETEDCTDNKCIKVESERTERKHEVRTTVETRPAETNVAQSQPNTATVMITNNQQVRAATVSTVGAVGAVGPVGAVGAVGAVSAVGAGATPTFAPHHAGANIAHHPVSVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01030446;
90% Identity
iTF_01030446;
80% Identity
-