Alit023191.1
Basic Information
- Insect
- Agrochola litura
- Gene Symbol
- -
- Assembly
- GCA_949152395.1
- Location
- OX424504.1:7907157-7909821[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-07 0.00011 23.3 0.0 1 39 66 105 66 109 0.91 2 2 2.6 1.3e+03 0.6 0.1 17 25 160 168 158 168 0.88
Sequence Information
- Coding Sequence
- ATGTTCATACCAGCACTGTTTATCTTCTGTGGGTTGGTCTGGTCCAGTCAGGCTCTGGACAATGGGATTGCGTTGACCCCACCCATGGGTTGGTTCTCGTGGCTCAGATACAACTGCACTATCGACTGTGAAAAATACCCGACCGAATGTATTAGATATATCATGGATGACCCCAACAAGAAGAACAGAAAATACTCGGAGACCGATCTCAAAACCGCTGTTGAAAATATTTTGAGTTCAACAATGACAGTTTACAGAGCTTCGAAGGAGTTTAAGATTCCATGGTCGACATTAAAAGAGAATGTGACGAAGAACAAAACTCTACGAGAGGGTAATCAAGATGCACAGATCGTAATGTCCAAGATAGGAAGGCCGTTTGCGTTACCTGTTGAAATAGAACAAAAGTTACTGGCCTATATTATTGAGATGCAAGAACGTGGTTTTGGTCTTACAGTTACCAAAATAAAGCAAATAGCATTATCTTTAGCAAAAGCTGCGAACATTTGCTGCACATTCAATGACAAAAAGGGATCTGCAGGGATCTAA
- Protein Sequence
- MFIPALFIFCGLVWSSQALDNGIALTPPMGWFSWLRYNCTIDCEKYPTECIRYIMDDPNKKNRKYSETDLKTAVENILSSTMTVYRASKEFKIPWSTLKENVTKNKTLREGNQDAQIVMSKIGRPFALPVEIEQKLLAYIIEMQERGFGLTVTKIKQIALSLAKAANICCTFNDKKGSAGI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -