Alit036249.1
Basic Information
- Insect
- Agrochola litura
- Gene Symbol
- clz9
- Assembly
- GCA_949152395.1
- Location
- OX424515.1:4123051-4125303[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.5e-08 1.2e-05 26.3 0.0 1 35 8 41 8 48 0.90
Sequence Information
- Coding Sequence
- atggcgCCTAAAAAAGATTATACACCTCAACAAATGGGCTTGGCTATCGAAGCTGTTAGAAAAGGCGTAAAAATATCCGAAGCagcaaaaaaattcaatgtgCCTAGAATAACTTTGCACAATAAAATCACCGGGAAAAGTCCCATAGAGTGCTCAATGGGACCCAGTACCGTTTTGTCGAAGGAAGAAGAGGATATTCTAGAAGTCTGGATTAAAGATATGGCAGATAAACATATCCCAATAACGAAAGAGGAATTATTAGACAGTGTCCAACGTATAATATTCGACAAAAACAGAGTGACTCCTTTCACTAATAACAGACCAGGCAAAAAATGGTATTCCTCATTTATGAAACGACATCCTACGATTTCTGAACGTACTGCTCAAAATTTATGTACAGCAAGAGATAATGTTACTCAAGACGACATTGAGAAGTGGTTTTCGGAAGTTGAAGGTGATTTGAAAGATAGAGGGCTGACTGAAATACTGAAAAATCCTAAAAGGATTTTCAATACAGACGAgagtgcgttttatttaaatccaAAACCAGGACGTGTCCTTGCTACAAAGGGAGAAAAAAATGTATATGCTTCTTCAGGCGacgataaagaaaatttaacagTTTTGGTTACTGGAAATGCCGCAGGAGATCTAGCACCTACTCTGGTAGTTTTTAATTATGCAAGGATACCGTCATCAATTTCAGAAACATTCCCCAATGAGTGGGCTATCGGTCGCTCAGAAAGCGGATGGATGTGCGCAGGGACATTCTTTGAATATATGACAAATGTTTTTAATCCTTGGCTGATAAACGAAAATATTGAAAAgccagtattattttttttggatggaCACAAGTCACATTTAACTCTGCACCTGTCTAATTTCTGCTCTGAAAATGGGATCGAAGTTATAGCACTTAATCCAAATTCTACACACATTTTACAGCCAATGGATTTGGCTGTCTTTAGGCCTTTGAAGTCATCATGGCGAGAAGCGGTTAAGACCTGGAAAATGCAAAATTTGGGACAAGTCctcaaaaaacataattttgctCCAGTTTTGAAGATAGCAATCCAAAAAATTACTTCTGAGACAGTCAAAAATGGATTTCGAGCGGGGGGACTGTACCCATTTGGTCCAGAATACGTAGACATGAGTAAAATCAAATCTCAAAACAAAAAGCAAATTGACTCAATGTGCCAAAACGAATTTTTGAAATCGTTAGAAACCAAAATACAAACAACTTTCTCAAGTGACAAATTAAAGCTGTTCAAAGATCTCTATTATAAAAGTCGCTTCGAACTTGATAATCTATTGCCTAATGAAGACATATCTTTATACTTGATTTGGGCCAGTAGTAAGCAAACTGATCATGACGTAGGTCATGAAGTATCAGCACCCACTACCTCCGTTGAAAAGTCAGGTCCCTTATCAGAAACTAACAATGACAATGATTCTCCAAAAGAAAATGAAACTATTGCTGTCTTGTCTCATAATACGAACCATTCCGAACCAAGCCCTTCAAGTCTCGGCCAGGGAGATTTAGTAGACATCACTACTTTACCAAAAAGTTACAAAACACCTATCAAGAGTTTTAATCCTAGCACTTCAAATTATGTGATACCATCGCCTTTTAAACGAAGCTTATATTGGCCAGAAATAGATGAAGCAACAAAAAACAAGAAACGCAAATTAAAAGAGAAATTTCCATTTACGATTACAAGCCCTGCATGGAAGACATACAATACCAAAAAGGAAGAAGAGAAAAGGAAACAAATAGAAGAGAAGGAATTGCGAGCAAAAAAACGAGAAGAAAAGAAATTGGAGaaacttaataagaaaaaagtgtcaaaaaaacaaaaaaacaggtCTGAATCATCTGAAAGTGAGACTGAAATAATTTATGCCgaaagtgatgatagtttcttgTCTGAAGGATCGGACGACGGCGAAGCATCAATGAATACGTTGGTCTCTTCACGACAGAAACACACGAAAGGAAGTTACGTGATAGTTTTATACGAAGGGCAACATTTTCCCGGAGTTAttgaaaacacaaataaaaacgaGTTTGAAGTTAGCACGATGACATTTTCAACAGGAAACACCTACAAATGGCCAGAGAAACCTGACAAAATGTGGTACCAAGGAAAAGATGTCGTAGAGCACATCAATCCTCCAATCTTGATAAACAAAAGAGGATTTTACACCGTAAAAGAAATGGAAAAATACTCTGTGTTTACTTCTTAA
- Protein Sequence
- MAPKKDYTPQQMGLAIEAVRKGVKISEAAKKFNVPRITLHNKITGKSPIECSMGPSTVLSKEEEDILEVWIKDMADKHIPITKEELLDSVQRIIFDKNRVTPFTNNRPGKKWYSSFMKRHPTISERTAQNLCTARDNVTQDDIEKWFSEVEGDLKDRGLTEILKNPKRIFNTDESAFYLNPKPGRVLATKGEKNVYASSGDDKENLTVLVTGNAAGDLAPTLVVFNYARIPSSISETFPNEWAIGRSESGWMCAGTFFEYMTNVFNPWLINENIEKPVLFFLDGHKSHLTLHLSNFCSENGIEVIALNPNSTHILQPMDLAVFRPLKSSWREAVKTWKMQNLGQVLKKHNFAPVLKIAIQKITSETVKNGFRAGGLYPFGPEYVDMSKIKSQNKKQIDSMCQNEFLKSLETKIQTTFSSDKLKLFKDLYYKSRFELDNLLPNEDISLYLIWASSKQTDHDVGHEVSAPTTSVEKSGPLSETNNDNDSPKENETIAVLSHNTNHSEPSPSSLGQGDLVDITTLPKSYKTPIKSFNPSTSNYVIPSPFKRSLYWPEIDEATKNKKRKLKEKFPFTITSPAWKTYNTKKEEEKRKQIEEKELRAKKREEKKLEKLNKKKVSKKQKNRSESSESETEIIYAESDDSFLSEGSDDGEASMNTLVSSRQKHTKGSYVIVLYEGQHFPGVIENTNKNEFEVSTMTFSTGNTYKWPEKPDKMWYQGKDVVEHINPPILINKRGFYTVKEMEKYSVFTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00726305;
- 90% Identity
- iTF_00036602;
- 80% Identity
- iTF_00036606;