Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.0079 3.8 8.7 0.1 22 37 80 95 75 103 0.81

2 6 0.0078 3.8 8.7 0.2 22 37 105 120 99 128 0.81

3 6 0.0078 3.8 8.7 0.2 22 37 130 145 124 153 0.81

4 6 0.0079 3.9 8.7 0.2 22 37 155 170 150 179 0.81

5 6 0.008 3.9 8.7 0.2 22 37 180 195 174 202 0.81

6 6 0.0013 0.65 11.2 0.2 22 42 205 225 200 227 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.0079	3.8	8.7	0.1	22	37	80	95	75	103	0.81
2	6	0.0078	3.8	8.7	0.2	22	37	105	120	99	128	0.81
3	6	0.0078	3.8	8.7	0.2	22	37	130	145	124	153	0.81
4	6	0.0079	3.9	8.7	0.2	22	37	155	170	150	179	0.81
5	6	0.008	3.9	8.7	0.2	22	37	180	195	174	202	0.81
6	6	0.0013	0.65	11.2	0.2	22	42	205	225	200	227	0.84

Coding Sequence: ATGTTGTGGTGGCTGCTGCGGTGGATGCTGCTGCCCTTGCATCACGATCTACACCTGCTGTACGAAGATTTGCTAGTGGCACCTAGTTGCGCAACTACGGCGCAGACGAGCCATGGTGTCTCCGTCAAAGATGGCGCAGCGACGCCTCAGATGTTTtatCAAACAGCGTCCCTCCCCACATTCCCTCGCCACACATTACTACGGCGTCCCTCGCCACACATTACTACGGCGTCCCTCGCCACACATTACTACGGCGTCCCTCGCCACACATTACTACGGCGTCCCTCGCCACACATTACTACGGCGTCCCTCGCCACACATTACTACGGCGTCCCTCGCCACACATTACTACGGCGTCCCTCGCCACACATTACTACGGCGTCCCTCGCCACACATTACTACGGCGTCCCTCGCCACACATTACTACGGCGTCCCTCGCCACACATTACTACGGCGTCCCTCGCCACACATTACTACGGCGTCCCTCGCCACACATTACTACGGCGTCCCTCGCCACACATTACTACGGCGTCCCTCGCCACACATTACTACGGCGTCCCTCGCCACACATTACTACGGCGTCCCTCGCCACACATTACTACGGCGTCCCTCGCCACACATTACTACGGCGTCCCTCGCCACACATTACTACGGCGTCTCTCGCCACACATTACTACGGCGTCCCTCGCCAGACATTATCAAGCGGCGTCCCTCGCCAGACATTATCAAGCGGCGTCCCTCGCCACTCGCCACCACAGACGGGGCAGCGTCCCTCGCCACCACACAGACGGGGCAGCGTCCCTCGCCACCACACAGACGGGGCAGTACATTGATATACTAGATCATTTCAGGATGTCGTCCCAGTCATCGCTTTCAGATTTTGAAGAGCATAGTCATAATCCAACTGCATAG
Protein Sequence: MLWWLLRWMLLPLHHDLHLLYEDLLVAPSCATTAQTSHGVSVKDGAATPQMFYQTASLPTFPRHTLLRRPSPHITTASLATHYYGVPRHTLLRRPSPHITTASLATHYYGVPRHTLLRRPSPHITTASLATHYYGVPRHTLLRRPSPHITTASLATHYYGVPRHTLLRRPSPHITTASLATHYYGVPRHTLLRRPSPHITTASLATHYYGVPRHTLLRRLSPHITTASLARHYQAASLARHYQAASLATRHHRRGSVPRHHTDGAASLATTQTGQYIDILDHFRMSSQSSLSDFEEHSHNPTA

Sequence clustering based on sequence similarity using MMseqs2