Astr018169.1
Basic Information
- Insect
- Agriphila straminella
- Gene Symbol
- -
- Assembly
- GCA_950108535.1
- Location
- OX467315.1:1814833-1824144[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.37 34 6.1 0.2 2 21 1555 1574 1554 1575 0.87 2 7 0.00013 0.012 17.0 0.7 2 23 1683 1704 1682 1704 0.94 3 7 0.0023 0.21 13.1 4.5 1 23 1723 1745 1723 1745 0.97 4 7 0.0061 0.56 11.8 4.2 1 23 1785 1807 1785 1807 0.98 5 7 0.0067 0.62 11.6 5.1 2 23 1830 1851 1830 1851 0.95 6 7 0.016 1.5 10.4 0.5 1 20 1875 1894 1875 1896 0.93 7 7 1 93 4.8 0.3 5 22 2244 2261 2241 2263 0.87
Sequence Information
- Coding Sequence
- ATGGATAGGCTGACTCAGTTGCGAGGTGAAGCGGGAACCTCTCGGGATTCCACGCTCGACACCTCGTCTCCACCGAGCGAAGCTTATATGACAGCTAATGAAACCTCTTCCAAATATTTCTCTTTATCAGAGGTGGACTCCACATTTGATATCGCCCCAATAAAGGATGTGTCTTCTGCTGTAGCAACTGAGAAGACGATGACTGATTCTGATAGATTGATATCTAACTTGTCTCCAATCGGAAAGAAAAACGACTTCCTAGATAGCTACAAAATTGGTAAACAAATCGAAGCTGCTAATATTTTGTCAGGTGGGGTGGATATTtttgatgataatgataattcaTATGACGGTGATGAGCTTATTATTGATGATAATGTTGAAGGTGAGGATAAAAGCAACTTGGATATGAAACTTACAGACTCTCCGATAAAGGAAGTTGATTCTACTGAATCAAACCTAGCTGAGGCAGAACCGGTGCTGACAAAAGATACAACCGAAGTGACTCTGCAAATAGATGGAAAAAATGTTGATGCCATTGATATTGGCAATGGGTTGTACCTGTACAGGCGACAAGGACAAGACGAATTGGCTGCCGTTCAGATAGATGAAGATCAACAGCAACCAAGCTACAAATTTCTTAAAGTGCGTGAAAATGATGAGGGAAATCTAGAAGTTTATGAAGAATTTCAAATTGAGGTCCCCAAAGAAGTGCCTGTTCAAGAAGGAAGCTCAAGTGAGGCGAGTGTGTCGCATGTGCCTATTAGTGATGTAACTTGTAACAAAGTAACTGAGAGAATTAAAATTCACGATGAAACTTTGGTGTCTAGTAACATAGAGAAAGATTCTTATAAAGATAATGATGCAAAAGAAGTAAATGGCAAGTTGGTGAAATTCTGTGAGTCTAGAAAATCTCCAGTTATCGGTAGTTTTACACCAATGACATATCATTCAACACCAAATAAGGAGGGCATTCCACTTACAAAAACAATGGTAGATTTGCAGCTTCATCCAAACAGACATTCTGACAATGTTAAGAAAACAATTGAGGTTCACACTGATAATGCTAAGCCTAAAGTAGatcaactaaataaaattcCGAAGGAAAGTGGAGACAAAACGAAAGTAgatgaaaaaaaagaagaaataaaagtattggagcaaagtaataaattaaataaagaacaaGTTGACTCTACAGCAGAAAATGACAAATCAGATGAAATAGTAAAGATTGTGGAAATAACTAGACTTGAAAATAAAGAAGCCAAAAAAGAAGGAAACGAACAATCAGATGAATCAACAAgtttaaataagaataaatTTAGTCAAGATGGTGAAGATAAATctaaatcttttaaaatagATTCAGAGCCTGCACTTATTATGTCAAAACCACCTACAAAACAAGTAGCATCAGAAATGCCTGCATCTAACAAACTTAATGAAGAAACATCGGAAAAGATCGTTATTACTGATGATAATAAACAAATATCAGAACTATCTACAAAAAAACAGGCACCAGAAATTGTTGAAAAGATACATACAATAACTTCGGATAAGGTAGTTAACATTCATGATACTAATAAATTATCTGAACAACCTACAAAAGAACACGCAACTGAAAATGCTTCTACTAAGGAGTTAAATGAAAAAGATTCGAAAAGGAAAATACCTACTGATGATACGAATCAAATATCTGAAATACCTACAAAACAACAAGCAACAAAAAATGCTGCTAATGAAAATACAAATGACACTGGTTCGAAAACAGGCGATACAAATCAAGTATCTGAAGAAATTGAAAGCCACAACATAGGCTctgttaataaagaaaaaatcgcaagtaatgtaaaaaatactttagagaCTGAAGTGGTAGCCAGCACTGTGCAGAATGAAGATATATGCGACAATACTAATAAAATATCTGTTGGTGGTACTATAAAAAAAGACAGTGAATTTGCTGATATTAATAAATCTGTAGCTGTCATTGCTGGTGTAGATGTTGAAGAACCTGTTAAAAATAACGAATTAGAGAATTCGTGTAATGTTTGCCCAGATATCACTGAAAGTACGcgtaaaatagaaaatattactGAACTGAAGGAAGAAGAGAAAAATTTTAAGGATAAAAAAGATGCGAGTGTTCCATCAAAGCTTCTTAaagttgaaaatgaaaataaagcgCCCGaagagaacaaagaaaaaagtcAGGTAAAAACAGGTGTTCCAATGATCAATAAAGACACTGATTCAAAATCGTATAACCAAAATGAAAATAGTACTAAATTATTAgatgatacaaaaaatacattggaaaataaagtaaatattgaCGATAAATCTAAACTATTACCTATTGGTGCTAAACCTACTGCTGACTCAACAATTACAAAAACTATTGAAACAAAGATATCAAGTAAAATGGATCCTCAAGAAGAACTTGCATCTGTTGCAgataatattaagaaaaaagaaactatcaataaaagttcaaaATCTACATTGATGCAAAATGTTACCCAAAATAAGGATACTACATCACCTAGAAAAACATTGCTTAATTTTAATGCAATTACAGAACAAAAGCCTATTGGCATCAATCACGCAGCAGTTCCTTTTGGCAAATGGACAGAAGCAAACAGGCAagcgtttttgaataaaataaaagaaacgaaAGTGCCTCCGAATAGTTCAAATGGAAAGCAAATAAAGAATTCAAATGATTTAAATCGCAGAGatgtatttaataaaactgATAGTCACAGACAGGTTCACACAAATATTCCATCAGCTAAAGTTCAAGATTTTGGTTGCAGCAATAGGTTGCCTGTCAAGAAAGAAGCTTCCGTGTTTACAAGTAAGCCTGCCGTGCAGGACAGCAAACTTCCTGTCAAAAACGAAACATCTTTATTATCAACAAATCCTACAGTCAGTAAAAAGATTGTTAAACAAGAATCTATTTCCAAGTCACAAGCAGACTCTGCTACTTCGATTGTAGAATCTACAGCTGTTACAATAAAAGAACAAACTCACAGAAAAGAAATTAATAACCAGGACCTAATCGATAAGACTATCGAAGATATAATAAGCAGGGCTCTGCCTATGAAATCACAAGCAGATAGTGGCCAAGATGTAATGACTGAAACGTTAGAAGCTTTACAAAACAACgaaaattttgatgaaattgaAAAGAGAATGAATGAGTTGCATGGTTTTGCTAACATTGAAAGATCCCCTAATTCAAATTTACAACAATCGgaacaaaaaacattaattaaatcTGACGTTCAAAAACTGTCGTGTAATAAACAAAGCAAAATACCCAATCTTttgccttttgcaaataaaaatatgcgAAAAGGTGTAAAGGAAAATATTATAGATAATATAGACTCTGAAGAAGAAGTAATAGAACATGAACCAATAACAGGCGATatggatttaaataaaaaagaagctGCAGAAATATCTCAAAGCCATGAGCAGTTGGGCACTGATAATTCCAAGAAGGAAGCTATTATAACTGAAaatgattttgataaatttgttaGACGAAATTCTATTACTTATGAAAACTGTATTACTGTAAATTTTGATGGCAATGAACCCGTAGTTCAAACTGTTGTACAAAAAGATACTGTTTTGAGGACTTATTCTAAACAAGATCGTCTTGATAATAATAAAGGATCTCTCAAACATGACACGTTGAAACAAAGTACTGCTACAAAACCCACTCAAAATGCATCTCAAGCTGTtgaagaaacaaacaaaaattaccaCTCAAAAGTTAAAATGGCTTATCAATCTGCTATGACAGTGAAACGTCAATTAGAGCGTCCTATCACAATTATAGAAGACAAACCTGTGAAGGTTGTCTTTATGGATAGTTGTGCTGAGTTTATGCCGAAACATTTAAATGCACACGGCAAAGAATTATCCCCTGCTAAAAAACAATTGCCAAGTATTGATTTGTGTAATAGTACTACAAGTGACTCACTTGATTCAGATATATTAGAGTTAGATGAAGGAAAATCTGCAGAGACTAAATCAAAGACGAAACATCAGAGGAAGCAAGTTTTAACTCCTGTAGAAACACCGGAGCTAGAATTAATAGAACCTGGTGATTTAGGAATACAAGTTTCACCAAAAAAGAAAAGGAAGATGGAAGAAAAGGTTGAAAATAGTCAAAAACCCCTTGTGCCTAAAAAAACGTATTTACTAGGACGTGGAGCCACAGCTGAAGATGTTACTAAGCCACACGATGGGACAAAATCCTTTGCTACAGAACAGACAAATGTTGACAAATTTGACACTAATCACATTTCACGCAACACTGCTTCTGCTATTGATAATTTGGTCAAAGCTGCTGAATTATTAGAAACCCAATCAGAAAATCTGAATCAATCTTCTATTATTGATCCTAAAGCTGATACTCCTCAAAAAACACCCGTAAAGAGAGGAAGAGGTCGTCCTCGAAAGTATCCTTTGCCTGAAGGAGCTGCTGATAAAAGTAAAGTTGAAACTCCACAAAAGAAGCCGAGACTATTTGATGCAAAAGTGGTTAAAGCTAGAGATACAGACGAGGATGATGATGACAGTAGTGATGGAGAGATAATAAGGGTAAATTGGACAATgggaaaaattaatgaaaatatagTTTGCCCAATTTGTAACAAGCTATTCCGTTCAGAAAATGTTGTTTTCAAACACGTGAAACATTGCACTGGACCTTCTCCAAATCGTTCAGATTCTGGAAATAAAAGCCCAAGAATGTTTAGGGAATCGCAGGATTCCGAACCAAAATCTGTTGACAGCAAATTAAGTGAAACAGAAATAGATGACAAAGAAAGTACCCGAAAAGACATCCGCAAGAAACGTAAATCAAGAGAAACAACTCTAAAATCAATGTCTTATAAGGATGAAAGTGTCACAGTTGAAGAAACTGTTTCAAAGTCGAAATCAGAAGAAACAATACATATGGAATCTAAAAAATTCAcgctaaataaaagtaaaattttggATCATAAGgcaaataatttgatttgtgAATTTTGTGGTAAAACATTCAGACAGCTTTCATATCTGGTTAATCATAAATTGCAACACGAGAAAGATGAGTCGAAAAATCgtgaaacagaaataaaaagttCGAAATCTGTATTCAGTTGTGAAGTATGCAAAAAAGAATTTCGAAAATTACACCATTTGGTACAACATCGATTAATTCACAATTCCAGTGGTGCGTCATCTGCTAAATTATTAAGAAAACGTTCTGCAGAGCAAATTGAGAACAGAACTTCCAAAGATCAGGATATGGGTAAGCAAGGTGATGATACTAGCGCTGGTTTTCGCTGTGAGCCATGTGATAAATCGTTTAGGAAATTGCATCATTTGGTAGAACACAGGGAAACTCATGACGGTATAAATAGACAGAAAAACCCAACTGTGACCGCACCTGCGGAGAAAGCTCCACCTCCACCGCAATGTGAAATATGTAAGAAAACTTTTAGAAAACTACATCACCTAATAGAACACAAAGAACAACATCTCGAGACAAGTTCCGAAAAGTCTGACGACAAAAGTGTCAAAAGTTCTCTCTCTACTAAAGATATTATTCACGAATGTTCACTTTGTTATATGGTCTTCCCTAATGAGCACTCGTTAAATAAACATACAATTATTTGCCAAAGGAAAAAACGTCAATCTGCTACGAAACAAAACAAACCCTCTAAAGAATTGGAGCAAGATGATGAAAATAACAAGATTGATAAATTAGATGATGACTTGGGAAAAGACAATGAAGTCATTATTGTGTCAGCAGAAAGCATTTCTGTTGATCAAAACGTTCAAAATATAGATCTCCATACTGAAAACCATACAAAAGAAGAAAGTAAAACTGATATTGCGAGTTCCGCGGTGGTAGCAAATATTGATGAATCTGCTGAATCTCCAAAACATAATGAAATAACTGAAAAACCAAAGGACTTAAATACCAATGTCATAAAAGAACATGAACCTGATGAAGTAACGAAAGTAACATCAGATATTCCAGTAATTCGCAAAAAGTCAGAAGAGAAAGAATCATTAAAAGTCGCAAACACGCCGAAAAAGAAAGCAGATAAGGTAGCTCCAACGGTTACTAAACGGCACAAACCGAATATTCCATTGCCTGTTGTTGATGACGTAAAATCTATGGAATCAAGTGATGATGACGAAGTTAGATACATGTTTAATCCTGATTACAAAACTGATGAGAATGTCAAAGGGAAGGTATTTATGAATATCAGGGCCAACAAACGCAATTCGCTTCAGATTGAACGCCCTAACTCAAAAGATCTAGTAAAGAGACGAATATCTCTCCAACATCATACCAAAGTCCCTCgattaaaatctaaattagtCCAAAGCAAAATCATGTCTACTGATACACAGCCAATCACCAAAAGTTTGGCCAAAATCGAACCATTGGAGCCTTCCACAGATTCAGACGATAGTGACGTTAAATATTCATTTCCAAAGACTCCAAAGTCGAATATCAATAAACCTTTATCTAAAGAATCTGGAAAAAAGCTTCCAAGGAAATCTCTAacagaaaaaagaaaatctcTCAGTACCATAGCTAAAAGAAAATCACTGGGAAAGTCATTAGGTGCGAAACACAAAGCGAAACCTTCTCCAATGAAGCCAATTAAAAAACGATCACCGGAGGCGGGGCACAGGTGCGACTGCGGGCAGTTGTTCAGCAGCGCGGCGCTGCTGGTGCGGCACACGGGGCTGGCGCACACGCCGCCGCGCATCCGGCGCCGCcgctcgccgccgccgccggcgccggACGCCGCCGACACCAACAAATCTACCACCAAACTCAAGGTGAGCACCACCAGAAAATCAAGCGTCAAGAATGACGCCGACTCCAAACCGGTCGCGGTCGCGTCAAAAAATCCCGAACTTCGTAAATCGCTAAAAACGAGTGAACCGGCAAAAAGTGGTGTGACGAACACGAAAGTTAAAAGGCTGGCGGCGCACAAAGGGGTGCCTGTCCCCGAAAAAATGAAGAAACTCATGGAGAAATCTAAAAAGTAA
- Protein Sequence
- MDRLTQLRGEAGTSRDSTLDTSSPPSEAYMTANETSSKYFSLSEVDSTFDIAPIKDVSSAVATEKTMTDSDRLISNLSPIGKKNDFLDSYKIGKQIEAANILSGGVDIFDDNDNSYDGDELIIDDNVEGEDKSNLDMKLTDSPIKEVDSTESNLAEAEPVLTKDTTEVTLQIDGKNVDAIDIGNGLYLYRRQGQDELAAVQIDEDQQQPSYKFLKVRENDEGNLEVYEEFQIEVPKEVPVQEGSSSEASVSHVPISDVTCNKVTERIKIHDETLVSSNIEKDSYKDNDAKEVNGKLVKFCESRKSPVIGSFTPMTYHSTPNKEGIPLTKTMVDLQLHPNRHSDNVKKTIEVHTDNAKPKVDQLNKIPKESGDKTKVDEKKEEIKVLEQSNKLNKEQVDSTAENDKSDEIVKIVEITRLENKEAKKEGNEQSDESTSLNKNKFSQDGEDKSKSFKIDSEPALIMSKPPTKQVASEMPASNKLNEETSEKIVITDDNKQISELSTKKQAPEIVEKIHTITSDKVVNIHDTNKLSEQPTKEHATENASTKELNEKDSKRKIPTDDTNQISEIPTKQQATKNAANENTNDTGSKTGDTNQVSEEIESHNIGSVNKEKIASNVKNTLETEVVASTVQNEDICDNTNKISVGGTIKKDSEFADINKSVAVIAGVDVEEPVKNNELENSCNVCPDITESTRKIENITELKEEEKNFKDKKDASVPSKLLKVENENKAPEENKEKSQVKTGVPMINKDTDSKSYNQNENSTKLLDDTKNTLENKVNIDDKSKLLPIGAKPTADSTITKTIETKISSKMDPQEELASVADNIKKKETINKSSKSTLMQNVTQNKDTTSPRKTLLNFNAITEQKPIGINHAAVPFGKWTEANRQAFLNKIKETKVPPNSSNGKQIKNSNDLNRRDVFNKTDSHRQVHTNIPSAKVQDFGCSNRLPVKKEASVFTSKPAVQDSKLPVKNETSLLSTNPTVSKKIVKQESISKSQADSATSIVESTAVTIKEQTHRKEINNQDLIDKTIEDIISRALPMKSQADSGQDVMTETLEALQNNENFDEIEKRMNELHGFANIERSPNSNLQQSEQKTLIKSDVQKLSCNKQSKIPNLLPFANKNMRKGVKENIIDNIDSEEEVIEHEPITGDMDLNKKEAAEISQSHEQLGTDNSKKEAIITENDFDKFVRRNSITYENCITVNFDGNEPVVQTVVQKDTVLRTYSKQDRLDNNKGSLKHDTLKQSTATKPTQNASQAVEETNKNYHSKVKMAYQSAMTVKRQLERPITIIEDKPVKVVFMDSCAEFMPKHLNAHGKELSPAKKQLPSIDLCNSTTSDSLDSDILELDEGKSAETKSKTKHQRKQVLTPVETPELELIEPGDLGIQVSPKKKRKMEEKVENSQKPLVPKKTYLLGRGATAEDVTKPHDGTKSFATEQTNVDKFDTNHISRNTASAIDNLVKAAELLETQSENLNQSSIIDPKADTPQKTPVKRGRGRPRKYPLPEGAADKSKVETPQKKPRLFDAKVVKARDTDEDDDDSSDGEIIRVNWTMGKINENIVCPICNKLFRSENVVFKHVKHCTGPSPNRSDSGNKSPRMFRESQDSEPKSVDSKLSETEIDDKESTRKDIRKKRKSRETTLKSMSYKDESVTVEETVSKSKSEETIHMESKKFTLNKSKILDHKANNLICEFCGKTFRQLSYLVNHKLQHEKDESKNRETEIKSSKSVFSCEVCKKEFRKLHHLVQHRLIHNSSGASSAKLLRKRSAEQIENRTSKDQDMGKQGDDTSAGFRCEPCDKSFRKLHHLVEHRETHDGINRQKNPTVTAPAEKAPPPPQCEICKKTFRKLHHLIEHKEQHLETSSEKSDDKSVKSSLSTKDIIHECSLCYMVFPNEHSLNKHTIICQRKKRQSATKQNKPSKELEQDDENNKIDKLDDDLGKDNEVIIVSAESISVDQNVQNIDLHTENHTKEESKTDIASSAVVANIDESAESPKHNEITEKPKDLNTNVIKEHEPDEVTKVTSDIPVIRKKSEEKESLKVANTPKKKADKVAPTVTKRHKPNIPLPVVDDVKSMESSDDDEVRYMFNPDYKTDENVKGKVFMNIRANKRNSLQIERPNSKDLVKRRISLQHHTKVPRLKSKLVQSKIMSTDTQPITKSLAKIEPLEPSTDSDDSDVKYSFPKTPKSNINKPLSKESGKKLPRKSLTEKRKSLSTIAKRKSLGKSLGAKHKAKPSPMKPIKKRSPEAGHRCDCGQLFSSAALLVRHTGLAHTPPRIRRRRSPPPPAPDAADTNKSTTKLKVSTTRKSSVKNDADSKPVAVASKNPELRKSLKTSEPAKSGVTNTKVKRLAAHKGVPVPEKMKKLMEKSKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00035241; iTF_00285007;
- 90% Identity
- iTF_00035241;
- 80% Identity
- -