Astr004969.2
Basic Information
- Insect
- Agriphila straminella
- Gene Symbol
- -
- Assembly
- GCA_950108535.1
- Location
- OX467304.1:34474038-34481825[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 9.2 8.4e+02 1.7 1.5 1 14 152 165 152 171 0.78 2 12 0.067 6.1 8.5 0.3 1 23 237 260 237 260 0.92 3 12 0.82 75 5.1 1.5 2 23 267 288 266 288 0.94 4 12 0.13 12 7.6 2.1 2 23 298 320 297 320 0.86 5 12 0.011 0.99 11.0 0.7 3 23 328 348 328 348 0.97 6 12 0.032 3 9.5 4.4 1 21 353 373 353 375 0.93 7 12 0.012 1.1 10.9 2.4 2 20 382 400 381 404 0.93 8 12 5.5e-05 0.005 18.2 1.0 2 21 411 430 410 431 0.95 9 12 4.1e-05 0.0037 18.6 1.0 1 23 438 460 438 460 0.97 10 12 9e-06 0.00083 20.7 0.4 1 23 466 488 466 488 0.96 11 12 0.00037 0.034 15.6 4.6 1 23 494 516 494 516 0.96 12 12 0.019 1.8 10.2 7.3 1 23 522 545 522 545 0.95
Sequence Information
- Coding Sequence
- ATGTCTGAAAATAGAAACAATATTGAAATAAGAACTTGTTGTATATGTCTTACTGCTAACTCTTCAGATAGACTTACGCTAAACAGTGAAAGTCCTTTGTTACAAACATATAGTTTTTGTTTTGGTGtatcaATGGACTTAAAGGGCATTCCTAGAAAGATGTGTGGTAGCTGTAGAATTAAACTTGAAGAGTTCTCAAGTTTTAAGAAAATGGCTCTCCGCTCTGATAAGCTATGGAATAGTGTAATCAATATAaataaaaaggatATAATACAAATAGACAAATTGGATGATAGTGAAACAAATGGTGACTTTACAtgtaatgatgatgatgtctatattgatgatgatactaacaataaaagtgaaaatactaaagatattaatttaaatgataaCACAAAGATTGAAGACAacgttgaaaatgtaaaaactgAAGATATTGCTTATGAATTCATTTGTTATTCATGTGGCCGGATATTTGGCTCGGAAGACCTTTGTAAAGATCATTTTGTTTATTGTATAAACAAGGAAAAAGGCCTAAACTTCTCCAGAACAACAGTTTCTCAAACAAATGatagtgAGCTTATTTTAGGTAAAGTgaaaagaaaattgaaaaaatctcctaaaaaaatgataaaaagacGTCGTACCAATGCGGATGAcgaaaaaaagttacaaaaaaaaccagaTGGCCCGCCTGATACTTATGATTGTGGTTTATGTAAAGAGATTACATTTGACAATGAATCGTCATTACGCCAGCATTTGACTGAACATAGCAATAACAATGATTTGTGTTGCAAGATATGTGATTTTAATGGTCGAGACTTTGCTGACATGACTTCACACAGGCTTCTTCATACGTCCAAGGAAGGCAAGATTCAAACAAAATGCCATTTATGTGGTAAGAGGTTTCAAGTTCCTTTGCGACTACAGTTTCACTATAGGTCAGTCCACCTGAACCAGAAGGGGGGCTGGTGTAGCAAGTGTGATAAAACATACATTAACCTAAAAATGTGGATAAACCATGAGAAATTACATGAAGTCCACCGCTTTGTTTGCGACCATTGTGGAAAAAAGTTTTACCTTCGTCGTCTAATCATCCAGCATCTAAGATGTCATTCCAATGTATACAAATTGGTCTGCGAAATTTGTGGTCGTGGATTTCATATTCAACATGATCTTAAGagTCATATACTGTGCCGacatactgaaaataaaaagattaaatgCACGCATTGTAATAAAATGTTCAAGAATAATTTAGGTTTAAGAACTCATATGCTGGAGGTGACTACTGAGAAACAGTTCCAATGTGAGTTTTGCTCAAAGAGATTTAGAATTCCTAGTGATTTGAAGAATCACAGGATTTGGCATTTGGACGATCGAAACTACTTATGTAAGATCTGCGGGCAAGCTTACAAATCGAGGCAGTATTTGAAAGTACATATGCTGATACATTTAGGTGACAAGCAACACAAATGCGATCAGTGTACAATGTGTTTTGTGACATCAAGTCAGTTGAAAACTCATGGCAGCGTACACACAGGCGTCCGGCGACACAAGTGTACACACTGCCCGAGGAGTTTCAATGAAAGGAAATATTTATTGCTGCATCTAGTTAAATGTCACAATATATCGAACAGTCCATCGCTATCGAAAGACTCGTTGGTTCCTACTTCCACTACAACATAA
- Protein Sequence
- MSENRNNIEIRTCCICLTANSSDRLTLNSESPLLQTYSFCFGVSMDLKGIPRKMCGSCRIKLEEFSSFKKMALRSDKLWNSVININKKDIIQIDKLDDSETNGDFTCNDDDVYIDDDTNNKSENTKDINLNDNTKIEDNVENVKTEDIAYEFICYSCGRIFGSEDLCKDHFVYCINKEKGLNFSRTTVSQTNDSELILGKVKRKLKKSPKKMIKRRRTNADDEKKLQKKPDGPPDTYDCGLCKEITFDNESSLRQHLTEHSNNNDLCCKICDFNGRDFADMTSHRLLHTSKEGKIQTKCHLCGKRFQVPLRLQFHYRSVHLNQKGGWCSKCDKTYINLKMWINHEKLHEVHRFVCDHCGKKFYLRRLIIQHLRCHSNVYKLVCEICGRGFHIQHDLKSHILCRHTENKKIKCTHCNKMFKNNLGLRTHMLEVTTEKQFQCEFCSKRFRIPSDLKNHRIWHLDDRNYLCKICGQAYKSRQYLKVHMLIHLGDKQHKCDQCTMCFVTSSQLKTHGSVHTGVRRHKCTHCPRSFNERKYLLLHLVKCHNISNSPSLSKDSLVPTSTTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -