Basic Information

Insect: Agriphila straminella
Gene Symbol: BCL11A
Assembly: GCA_950108535.1
Location: OX467321.1:12937958-12960741[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 4.6 4.2e+02 2.7 1.3 1 23 208 231 208 231 0.93

2 6 6.7e-05 0.0062 17.9 3.8 1 23 499 521 499 521 0.97

3 6 5.7e-07 5.3e-05 24.4 0.9 1 23 527 549 527 549 0.99

4 6 2e-07 1.8e-05 25.8 2.9 2 23 767 788 766 788 0.97

5 6 1.4e-05 0.0013 20.0 3.3 1 23 794 816 794 816 0.99

6 6 9.3e-05 0.0086 17.5 0.4 1 22 824 845 824 845 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	4.6	4.2e+02	2.7	1.3	1	23	208	231	208	231	0.93
2	6	6.7e-05	0.0062	17.9	3.8	1	23	499	521	499	521	0.97
3	6	5.7e-07	5.3e-05	24.4	0.9	1	23	527	549	527	549	0.99
4	6	2e-07	1.8e-05	25.8	2.9	2	23	767	788	766	788	0.97
5	6	1.4e-05	0.0013	20.0	3.3	1	23	794	816	794	816	0.99
6	6	9.3e-05	0.0086	17.5	0.4	1	22	824	845	824	845	0.97

Sequence Information

Coding Sequence: ATGGCGACCTGCAATGGGCGTGGTGACTCCAATATGGAAGCTGCGGATGCGGACAGCGCGGCAGAAGGCGGTGGATCTCCAACTCCTGGGGTTCCAGCGGACACCCTCACCTGCGGCGCTTGCAGGCGAGCCTTCGCCCTTGCCGACATCGTGCGGTTCATCCAGCACAAAATCTCCTCTTGCGATAAGGACCTCACGTCATACCATTGTTACAGTgctgGTCCCAACTCAGACCCAGAAGATGGTTCAAGACCGGGTCAAATGTCAACAAGTAACTCCAGCAGTAGAAGGCCATCACTTCTCACTGCCAGGAGGCCTCCCAACAGTAGAGTGCACACCCCTCCCTTGGCCAGTCCATCGATAGCCCCACCTGACCTCATAGAAGATGGTGGAGCATCGAGTACGCCAAAGAGGCTATTAGATGAAGCGGATACCGATACAACTACACCGAAAAGAAGAGCTTCAACTTCACCGATGCCTTCTAGTTCCCCCGATGAAGATATCaaacccaaaatcaagcaaGAACATATGGATATCTCTGGGTCACCTGAAGACCAGAAGAAATCCAGAACAGAAGTTGCTGATGCAGAATCTAACACAATGCACAGTGAACCGAGCAACTACGTGTGTTCAACATGTAAAGCCCGCGTTCACTCTGCGTGGAGACTACTGCAACATGTGCAACACGTGCATGGTGTCAAGATCTACGTGGAGACGTTACCTCAGCAGCAGCCTAGTAAACAGAACCACTCGTCTTCGAGTACTTCGTCGACGAGTTCAGGATGCTCGTCCAGTGGTCCGCCGCCTCTCCCACCACCTTCATTACGCCATCACCCTCTTTTACCACCTCCCGATATGCATTCCCCGTTCGGAGTAGGTGGATTACTCCGAATGCCGTTACCAGGCAGTCTACCACCTCTAGCTCATCCTTCGGTTCCGCCAGCACCCTTATTTGCTCGGCCGAATCACCACGACCATCGATTCAGAATGGAACAACTTGTATCAGAACAGTTCCGACATCATGGCCTCAACCTTGCAGCCGCTGCGGCTGCTGTTGCGGCAAATTCCCTACCACCTCACCAAACATTCCCTTCACCGGCTGACCGACCTCCCGTTGTACCAACTTCGGTGTCAGGACGGGACAGAGCACCATCAGTATCACAACCCCTTTCACTTGAACCCCAGCTGGATTTTTACTCGCAGCGCTTGCGGCAACTGGCCGGTACGACCAGTCCAGGGGCGGCCACAGGCAATTCCAGCTCTCCTAGCCCCAGGAAGCATTCGCCGCCGTTCGCTTCCCCGTCGCCCTCCCGAGTCGGTCAGACTCCACCGGTGGGCGCCGGACCCGGAACGGTGGATACGCCTCGCGAGGCGATCAGACCGCACAGTTCAACGTCCCCAGAAAGACGAACTGAGCCGATGGCGGCTGACGCTCCACCATCCGAGCGCCCGTCATCAACTCCACCAGCTAAACGAAACAACGATGAAGTGGTCCACTCTTGCGAGTTTTGCGGAAAGAAATTCAGATTTGAGAACAATCTGATGGTACATCGACGATCTCACACGGGGGAAAAACCCTTTAAATGTACAGAATGCGATGAAGCTTTTGAGAAAGCGTCAAAGCTGAAAAAGCATATGAAAGTGCATCGAGGGCCTGACGTTAAATCGGAGGAAGGTGAATCTGGTGGTGATACCGCTGAAGACGACTCTGATGATGAGTTGGAGGATGAAGAACTCGATGGTGAAGAGGAAGATGAAAATGAGGATGGTGAAGATGGTGAAGAGGCTGAGGATTTAACAGTATCAAATAGTAGCGCTCCCTCAGCACCAACTCGGAAACAAACTCCAGTTTTGCCAGCCCACCCGCCGACTGCCTCCGTAGTAGGTGAATTGATGGACAAATTCGGTCTCTCAAATATTGCTCAGTACAGCGAAGCCTTCAAACAAGCTTTGCAGGAATCTGGGAAATCGTTAAATTGGCAATTAGCCAAAGACCGGGATAATAACAATGGACCACCCAATGAGAAACCCAATGGTATGCCACCTACAGCCGCCCTACGTTTAAAAGAAGAATTTGCTAAAATGCCACCTCAACCTCATCCACTCTTCAACCCTTTTGAGAACCCTTTTGAAGCTTCGAAACGAATGAAATTAGAGATGGACAGAGGTGAAGGCTGGTGGCTTCCAACGTTACATGCGCAAAGGCCCccggaaaatatttttgatggaTTAAAAAACAGCAGCAATGGCTTGCTACAGAATCCTCTATTGAAGTCAAAAGAAGGGAGGCGGAATGACACTTGTGAATATTGTGGCAAAGTTTTCAAGAACTGTTCAAACTTGACGGTGCATAGGCGTTCCCACACTGGGGAAAAGCCTTACAAATGTGAGTTGTGTTCGTATGCATGCGCGCAGAGTTCAAAGCTGACGCGCCACATGAAGACACACGGTAGGTTAGGCAAGGACGTATACCGCTGCCGGTTTTGCGAGATGCCCTTCTCCGTGCCGTCGACATTGGAGAAGCACATGCGTAAGTGTGTTGTGAATCAAAGTAATGGTGCTCCCTTAGCATTATCCGATGACTCTAACGCGTGCCGCGATGAGGCCTCGTGA
Protein Sequence: MATCNGRGDSNMEAADADSAAEGGGSPTPGVPADTLTCGACRRAFALADIVRFIQHKISSCDKDLTSYHCYSAGPNSDPEDGSRPGQMSTSNSSSRRPSLLTARRPPNSRVHTPPLASPSIAPPDLIEDGGASSTPKRLLDEADTDTTTPKRRASTSPMPSSSPDEDIKPKIKQEHMDISGSPEDQKKSRTEVADAESNTMHSEPSNYVCSTCKARVHSAWRLLQHVQHVHGVKIYVETLPQQQPSKQNHSSSSTSSTSSGCSSSGPPPLPPPSLRHHPLLPPPDMHSPFGVGGLLRMPLPGSLPPLAHPSVPPAPLFARPNHHDHRFRMEQLVSEQFRHHGLNLAAAAAAVAANSLPPHQTFPSPADRPPVVPTSVSGRDRAPSVSQPLSLEPQLDFYSQRLRQLAGTTSPGAATGNSSSPSPRKHSPPFASPSPSRVGQTPPVGAGPGTVDTPREAIRPHSSTSPERRTEPMAADAPPSERPSSTPPAKRNNDEVVHSCEFCGKKFRFENNLMVHRRSHTGEKPFKCTECDEAFEKASKLKKHMKVHRGPDVKSEEGESGGDTAEDDSDDELEDEELDGEEEDENEDGEDGEEAEDLTVSNSSAPSAPTRKQTPVLPAHPPTASVVGELMDKFGLSNIAQYSEAFKQALQESGKSLNWQLAKDRDNNNGPPNEKPNGMPPTAALRLKEEFAKMPPQPHPLFNPFENPFEASKRMKLEMDRGEGWWLPTLHAQRPPENIFDGLKNSSNGLLQNPLLKSKEGRRNDTCEYCGKVFKNCSNLTVHRRSHTGEKPYKCELCSYACAQSSKLTRHMKTHGRLGKDVYRCRFCEMPFSVPSTLEKHMRKCVVNQSNGAPLALSDDSNACRDEAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00040232;
90% Identity: iTF_00007480;
80% Identity: -