Basic Information

Insect: Agriphila straminella
Gene Symbol: RREB1
Assembly: GCA_950108535.1
Location: OX467324.1:13161861-13167081[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.012 1.1 10.8 0.5 1 23 56 79 56 79 0.96

2 12 0.93 85 4.9 0.1 1 22 121 142 121 142 0.94

3 12 0.024 2.2 9.9 0.1 1 23 269 291 269 291 0.97

4 12 0.0013 0.12 13.9 0.4 1 23 300 322 300 322 0.99

5 12 0.00079 0.072 14.5 2.0 1 23 328 351 328 351 0.97

6 12 0.0032 0.29 12.6 1.6 1 23 695 718 695 718 0.96

7 12 0.00027 0.024 16.0 1.3 2 23 916 937 915 937 0.97

8 12 0.027 2.5 9.7 5.3 1 23 943 966 943 966 0.97

9 12 0.11 10 7.8 1.5 1 23 999 1023 999 1023 0.91

10 12 0.03 2.8 9.6 0.2 1 23 1046 1069 1046 1069 0.93

11 12 0.024 2.2 9.9 0.3 2 23 1109 1130 1108 1130 0.92

12 12 0.013 1.2 10.7 5.7 1 23 1136 1158 1136 1158 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.012	1.1	10.8	0.5	1	23	56	79	56	79	0.96
2	12	0.93	85	4.9	0.1	1	22	121	142	121	142	0.94
3	12	0.024	2.2	9.9	0.1	1	23	269	291	269	291	0.97
4	12	0.0013	0.12	13.9	0.4	1	23	300	322	300	322	0.99
5	12	0.00079	0.072	14.5	2.0	1	23	328	351	328	351	0.97
6	12	0.0032	0.29	12.6	1.6	1	23	695	718	695	718	0.96
7	12	0.00027	0.024	16.0	1.3	2	23	916	937	915	937	0.97
8	12	0.027	2.5	9.7	5.3	1	23	943	966	943	966	0.97
9	12	0.11	10	7.8	1.5	1	23	999	1023	999	1023	0.91
10	12	0.03	2.8	9.6	0.2	1	23	1046	1069	1046	1069	0.93
11	12	0.024	2.2	9.9	0.3	2	23	1109	1130	1108	1130	0.92
12	12	0.013	1.2	10.7	5.7	1	23	1136	1158	1136	1158	0.97

Sequence Information

Coding Sequence: ATGGACAAAATGGTTCAGATTCAAGACTTGAGGCCTAACAGGACGACCAGCATCGACAGCGACAATCGCTCAGACAGAAGCGAAGAAGAAGTTTCCAGGAGAACGCGGAAAAGGGCAGCTACCACGTCTCCTTCTCCAATACCGTTGGACAAGAAGATCGCCAGATTCGAATGCCCCAAATGTCGTCTGCGGTTTGACTCCGCTGACACATTTGATATCCATCGCTTCACAGCGCATGGAGACGATACCAGAATAGGCTATGACGATCTCAGCTAtgacatttcaaacaaaaaatatccaGATATCACCCGTGGACTGTGTGAACGCAACCCTCATAATTTATCAGTAACAGAACAGCGCTTTAGATGCGAAATGTGCTCTAATGCTTTCCCAAGTGGACAAGCTTTGGACATCCATAGAAAAACTTGCACAAATACTCGAGTCCCTAGTCCTGAACGAGATAGAAGAGAAGACTTCTTCGCTAAACTTGACCTTAGGAACAGGTCTTTCGGCATCCCTGGTACTTTAACACCACCAATGGAGAGATTCACCCCAAAATTTGAAGATGGTCACCTAACCAACGGCATTAGACATATTGATGCTGCGAGAGATCTAGCGGATATTCAATCCATTTTAAACGTAACGTCTGCAGGAAGTCTTTTGGAAAGATTAACGGGCACAAGGGTGTCGTTAAGCGACGCCGCTGTCTTAACTCCACCAGATACTGGATCTAAGGATAGAGAACAAGAAGAGACGCAAGATAATTTCGCAGCAGAATTCCGACGAATGAAACTAAGAGGAGAGTTTCCTTGTAGGCTATGTCCAGCTAAGTTCCCTAACTTACGTGCATTAAAAGGACACAATAGGGTTCATCTCAGTGGCACTGGTCCTGGACCAtatcaatgcaatatgtgcccTCATGCTTCCCTCGATAAAGCTGCGTTAGTACGACATATGCGAACACATAATGGCGACCGTCCTTATGAATGTGCAGTTTGTAACTATGCCTTCACTACCAAGGCGAACTGCGAACGGCATCTTAGAAATAGACATGCTAAGGTAACGCGGGAAGACGTGAAACGCTCAATCATTTATCACCCATCTGAAGACCCTAACAATGACGAAGTCAACTCAAAATTAGCTCGTGATGAGGTCAAAAGATCATTGGCGTTCCCAACGCCGGAAATTGAAAGGCGTAGTGAGATTACAGGCAGAGATACGCCTCTAACTCATTTTACACCCAGTTTTATAACTGAAAGGCATCCAGTTGCAGCCCTAACAGCTAAACCATTACCTGAAAGTCCTTTACTGACTCAAAGAGAAGCTGAACAAGCTGTACCGAGAATTAAAGTAAAAGGAATTGGTCAATTAACTCAAATACCAGAATTCAGACCACGAGAAATATCATACAAGTCTAACGATGTCCCTTCTGAAACTTACGATGACGAAGCACCTGTCGATCTCAGTACTAGTGATAATAATAGCTGTGACGTTCTGGATCTCAGTAAAAAGAAACGTGATGTTGATAATGATGAACCCAAGCCCCCACCGAGACCTTCATTCGAGCCTGATCCAGCTGCCGTCGCAGCCTCCACCTTTGAAAAAGCTAGTTTGCTACTAGCTCAACAAAGATTATTCGGAAATACCCTCCCAAAACTTGACCCTGCCTTCTATGCAAATCTTTACGGTGGCGCTGTTCCAGGTATCCCAGGACTGCCTCTCCCACCATCCTTTCCAATCAGTCCTTACTTTCTACAACCTTCTATATTTCCTCACCCAAATGACTCCCAAGAACTTGCCGAAATAAAGCAACGTATACAGAAAGAAATTTTTCGAGGCTTGAGTATGTCCGGTGGCAGCCTTGTCCCGAATGAACAAGAAACACCAACTAAACAGGAGCCTGAAGAAGAGGAACCGAAGCCTCTAGCTTTACCAAGGTCTCCTTCACCATGTCCACAATCCGAATCTCCCAGACCATTGAGCAACAATCTCCTATCACCAAATGACTCAGTAAAGATGGTGATAAAAAACGGTATTCTGATGCCAAAGCAGAAACAGCGTCGTTACCGCACTGAGAGGCCCTTTTCTTGTTCTCAATGTTCCGCTCGTTTCACTCTAAGGTCGAACATGGAGAGGCATGTGAAACAACAACATCCACAGCACTGGAGTGTTCGAAGACCAGCCCCTAGAGCTCCTCCACCATACCCTACAACAGACGGTTTGGCAGATCGAGTCAAATACGCGCTATTAGCTCGCCACTTAGAAAGGCCATTACAACAATCAGATAGGTCACCAGCTCGAAGAGATTCCGATGAGGTGGCTGACAATGAAGAAGATGAAGAAGACGCCTTAATCATTGACGAAGAACCAGAATCGGACACCAAATACGATGAACATTCAGCTGCCCACAGAGCTGCAGCAGAAATTCTGATGGCAACACGCCAACAAGAGCTTCACAAAGATTTCGATTTGAAAATAGCTggaaacttaataaataaacctGTACCTATAACAACAGAGAAGACAGAAAATGAATCGGAGCCTATTACGGTGTCCAATGCTGATGGGTTGCCTGTACCCGCCGCGGTGCCTTCACGCAGCGATGAAGAGGAAGATGAAGAAGGTCTAGTTGCTTCTACTAGTGAAGGCAACAACTCTGGGAGTGATGAGAATAAATCCGAATCGGATAACGGGAACCAACCACCAAAGAAGAAGTCTGCCTACAGCTTAGCACCGAATAGAGTATCCTGTCCGTACTGCCATAGAAAGTTTCCGTGGTCATCATCACTACGGCGCCACGTGCTCACGCACACTGGGCAGAAACCCTTCAAGTGTCCACACTGTCCATTGCTATTTACCACCAAATCCAACTGCGACCGCCATCTGTTGAGAAAGCACGGAGGATCAGCTCGAGCTATCCTTGCAGAACCAATTCCAGATACAATGACGCAACCACAGCCTTTAAATGATACACGAACTGTTCCGGAAAGACCGTTCAAATGTGCTTCTTGTCCAACTAGCACTTTCTCGACTATGGACACTCTTAAGAAACACATGTCGTCGCGCCATGGCGCTGGAGATTCTCAACCTAATTCGCCTAACCCAGATAATGAAGATGTGACTGATGGAATAGTCTTCAAATGCCACTTGTGTGAAGCTTCCTTCAGCGATAGGGCTGGTGCTCTTGGGCATTTGGCGACATCGCATTTGTCTGAGTATGAGCAGTTGAAGAATAAAGGAGCTTTGGATGCAGCCAGCGATAGGAGCGAAAGCGCCGATGATGATGAAAGAGGGAAGTTTCCAGACCATGCTAATAGAAAGGTGGTTTGCGCATTCTGCATCCGTCGGTTTTGGTCTGCGGAAGATCTACGCCGGCACATGCGCACGCACTCCGGCGAGCGGCCGTTCGCGTGCGACCTGTGCCGGCGCCGCTTCACGCTCAAACACAGCATGCAGCGACACCGCAAGAAGCACAGGGAGGAGATCACTGACGACGAGGAACCGACGTCCCCGCACACGCCGCTTGAGCCTCAGAACTTGACTAAtggGTATCGCTACCAAGATGAAGACGGCTCCGGGAACGAAATCCCAAGCAATGTGAACAACAACAACTCGCCTCCAGCCGCGCCATACGACAAAAAGCTCAAACTGGACATGACATCGCGCAAATATTCGTCCGAAGCCGAAAATGACACCGAAAACGGTGGCGACCTTATCGGAAAACTACTAGGCATACCCGACAAAACTATCATCAACAAACTGCTCTCTTCGGCTGACGAAGCTGCTAAGTTCTTAGGGGTAAACAAATGA
Protein Sequence: MDKMVQIQDLRPNRTTSIDSDNRSDRSEEEVSRRTRKRAATTSPSPIPLDKKIARFECPKCRLRFDSADTFDIHRFTAHGDDTRIGYDDLSYDISNKKYPDITRGLCERNPHNLSVTEQRFRCEMCSNAFPSGQALDIHRKTCTNTRVPSPERDRREDFFAKLDLRNRSFGIPGTLTPPMERFTPKFEDGHLTNGIRHIDAARDLADIQSILNVTSAGSLLERLTGTRVSLSDAAVLTPPDTGSKDREQEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLARDEVKRSLAFPTPEIERRSEITGRDTPLTHFTPSFITERHPVAALTAKPLPESPLLTQREAEQAVPRIKVKGIGQLTQIPEFRPREISYKSNDVPSETYDDEAPVDLSTSDNNSCDVLDLSKKKRDVDNDEPKPPPRPSFEPDPAAVAASTFEKASLLLAQQRLFGNTLPKLDPAFYANLYGGAVPGIPGLPLPPSFPISPYFLQPSIFPHPNDSQELAEIKQRIQKEIFRGLSMSGGSLVPNEQETPTKQEPEEEEPKPLALPRSPSPCPQSESPRPLSNNLLSPNDSVKMVIKNGILMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPTTDGLADRVKYALLARHLERPLQQSDRSPARRDSDEVADNEEDEEDALIIDEEPESDTKYDEHSAAHRAAAEILMATRQQELHKDFDLKIAGNLINKPVPITTEKTENESEPITVSNADGLPVPAAVPSRSDEEEDEEGLVASTSEGNNSGSDENKSESDNGNQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPIPDTMTQPQPLNDTRTVPERPFKCASCPTSTFSTMDTLKKHMSSRHGAGDSQPNSPNPDNEDVTDGIVFKCHLCEASFSDRAGALGHLATSHLSEYEQLKNKGALDAASDRSESADDDERGKFPDHANRKVVCAFCIRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMQRHRKKHREEITDDEEPTSPHTPLEPQNLTNGYRYQDEDGSGNEIPSNVNNNNSPPAAPYDKKLKLDMTSRKYSSEAENDTENGGDLIGKLLGIPDKTIINKLLSSADEAAKFLGVNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00961349;
90% Identity: iTF_00035125;
80% Identity: -