Astr030373.2
Basic Information
- Insect
- Agriphila straminella
- Gene Symbol
- -
- Assembly
- GCA_950108535.1
- Location
- OX467326.1:5917879-5931727[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.3e-06 0.0003 22.0 2.1 1 23 277 299 277 299 0.98 2 11 0.086 7.9 8.1 3.4 3 23 309 330 307 330 0.92 3 11 0.47 43 5.8 0.1 1 23 334 357 334 357 0.93 4 11 0.0055 0.5 11.9 2.5 1 23 432 454 432 454 0.99 5 11 0.012 1.1 10.8 1.6 1 23 462 485 462 485 0.97 6 11 0.00064 0.059 14.8 2.7 1 23 516 539 516 539 0.98 7 11 1.8 1.6e+02 4.0 2.6 1 23 543 566 543 566 0.86 8 11 0.15 13 7.4 0.4 3 23 966 987 964 987 0.96 9 11 5.2e-06 0.00047 21.4 1.3 1 23 996 1018 996 1018 0.98 10 11 0.00064 0.059 14.8 0.6 3 23 1026 1046 1024 1046 0.96 11 11 3.4e-05 0.0031 18.9 4.6 1 23 1052 1075 1052 1075 0.98
Sequence Information
- Coding Sequence
- ATGCGAGAAGTCAAAGCGTGTATAGTATGTTTTACAATGGATGTCAAGTTGTACACCATGGATAAAAATCAATTGCGGCACCAATACAATTTGCTTACAGGGCTCCagataaagAAAGGCAATGGAATGCCGGAGTATTTATGTTATCAGTGCTGTAGCTATATGAACAGCTTTATAAAGTTTCGTGACAAGTGCCACAGAGCTTATTTTGTTTTGGAAGAATTACTTGAAAAAGATGATGAGATAAGAAAGGACAGATTAGTTGCAGTAGATCGAGACTCcatcagtattaatccttaccTATCATACTTAGAAGTAAACAGAGCACATTATGAAGAACATAAGTTTCAATGGGTTAGAAATAATCGTAATATAACTTCAACAACTGATATGATACCAGTTGTGACCCACACAACTCTTCATAAAGAAGTGATGATTGATGAAACTTTTACAAATGGAAGTTTTACTAAACAGGCCAATAATTATGTAAAGGAAGAGAGTATGGGTATGATAGAGATTAATTTTAATGCCCCAATAGATAATTCTTGTAATGACAACAATTTGAATGCACAATCAACCTCTGGTTATAATGCTGACAATACTCAAATCCTTGAAGATAATGACAATGATAACTTTTTCAATAGTGATGAAGAAGGTAGCGTTCGAAATGTGCCGATTCCAATTAAGAGTATAGCAAAAAAATTGAAGGAACCAGAGGGAGAAGCAGATGGATGCATTCTTGATGCGGAGTATGCGACTATGCATGCGATCTCAAGGAACGAGGCTCAAGCTGCAGTAGAGATTATGAAAATGTTTGGGGTCGGGAAACATAAATGCAATGTATGTGACAAACCTTTCAGTAACGAGAATCGTTTGAAGATCCATATGCGCATGCATGATCAGTATATCAGCGGCAGCCATTTGtgtgaaatatgtaaattttattacaaatcaaGCTTCTTGTTAAAAACACATATGACAGAAAAACACATGTACAAATATGTGTGTAAAAAGTGCCCTGAAGTTAGTTTTGATAGGCCAATGGCAAAACAACACTACATTTCGGCTCACTTAGAAAAACGCAGAAAGAGTAATGCAGAGTGGGATGTGAGCCGGCCAACTTGGCTGAGTACGAAAGGAGGGAAGCGTATCAAAGGGGTGTCTGCAGTCAAAGTAGTGCGTAAGCCAGCTAAGAAACccgatgacttcctcatatgtACACCTGTCCGTCAAGAAGATCAATACTCGATAATCCAAGAGAGGAAAAACTCAAGGAATTATATGGAGGCACCGTTCAAATGTGAACTTTGCTTCAAAGGATACAGAGAGCAAATGACATATGGCAAACATATGAGAAAACATGACCcgATATTTTCCGGTAACTACCAGTGTGATATGTGCAAACTATATTTCAAGGATGCGAGAAAGATATACAAACATATGACTATAACACATCTGTTTAAGTTGTCTTGTCAGTTTTGCAGTTATGTGTGTTTCAACAAGGGCCAAGCACACACGCATTACATGTTTCATAAAAATGTCACATATAAGTGTCCTCATTGTCCCATggaatttaaGAAACAGTCGACGCGGCTGACCCACGTCCGGATCAAGCACCCATCCTCGTTCATATGCAATCTGTGCGGACACTCCTACGTGAGCGATTCTGGACTCTATTGCCACAGGCAGTTGTCACATACGGCGGAGGAGTTAGAGCTCAGCTCGCAGATGCAAATGGACACAAGCAGCGAGAACTACTGCGCGGAATGCGACGTTCTGTTCTTGAGTCAAGCGGCGTTCGAGACCCACCTCGGCAGCTCTAAGAAACATGCCACTACAAATGAGTCTATAACAAATTCGGTCCGAGAGCGCGCGCGGCAAACACGCGCCAAGAAGCGTCCGGTGGGGcgcggccgcccgcgccgcctgccCGGCGACTCCGACATAGTCAACAACGGGGTCGTCACTTCTACCAGCTGCGAGATTGTGagtacacacacacgcacacacacgagccgcccgcgccgcctgccCGGCGGCTCCGACATAGTCAACAACGAGGTCGTCACTTCTACCAGCTGCGAGATTCTGCGAGATTGTGAGTACACACACAcgagccgcccgcgccgcctgccCGGCGACTCCGACATAGTCAACAACGGGGTCGTCACTTCTACCAGCTGCGAGATTGTGagtacacacacacgcacaaacacgagccgcccgcgccgcctgccCGGCGACTCCGACATAGTCAACAACGGGGTCGTCACTTCTACCAGCTGCGAGATTCTGCGAGATTGTGAGTACACACACAcgagccgcccgcgccgcctgccCGGCGGCTCCGACATAGTCAACAACGGGGTCGTCACTTCTACCAGCTGCGAGATTCTGCGAGATTGTGagtacacacacacgcacaaacacgagccgcccgcgccgcctgccCGGCGACTCCGACATAGTCAACAACGGGGTCGTCACTTCTACCAGCTGCGAGATTGTGagtacacacacacgcacacacacgagccgcccgcgccgcctgccCGGCGGCTCCGACATAGTCAACAACGGGGTCGTCACTTCTACCAGCTGCGAGATTGTGAGTACACACACAcgagccgcccgcgccgcctgccCGGCGGCTCCGACATAGTCAACAACGGGGTCGTCACTTCTACCAGCTGCGAGATTGTGagtacacacacacgcacacacacgagccgcccgcgccgcctgccCGGCGGCTCCGACATAGTCAACAACGGGGTCGTCTCTTCTACCAGCTGCGAGATTGTGagtacacacacacgcacacacacgagccgcccgcgccgcctacCCGGCGGCTCCGACATAGTCAACAACGGCGTCGTCACTTCTACCAACTGCGAGATTTGCAACAAATTCCTTGTGAACGACGTGCAAGCCCGCAAGCACTACCAGACGGAGCACCCGGGCGCGGAGTACCTCAAGCGGTACATGTGCGACGTGTGTGGACACACCACTAAGCAATACGCAAACTTAATGGTTCACATGCGAACTCACACGAATGAGAAGCCGTACGGGTGCCCGCACTGCGACCGCCGCTTCAGCATGCCCAGCAACCGCGACCGGCACATCGTGGTGCACACTGGAGAGAAAAAATACCAGTGCCATCAATGCCACCGTCGTTTCACTCAAAGCAGCGCCGTCAAACTGCACATTCAGACCGTACATCTGAAGATACCATACGCCCCCTGGGACAAGAAGAATAGAAAACGGCGCAAGGAGCTCGAGGGAGCCGCGGGGCCGATCAGCGCGGTCAATGTGAATCTACAACCACAGCCCAAGCTCATACTCGATCAAGACTATTTGAATGCCTACATTAACTACAATGACGAGTAA
- Protein Sequence
- MREVKACIVCFTMDVKLYTMDKNQLRHQYNLLTGLQIKKGNGMPEYLCYQCCSYMNSFIKFRDKCHRAYFVLEELLEKDDEIRKDRLVAVDRDSISINPYLSYLEVNRAHYEEHKFQWVRNNRNITSTTDMIPVVTHTTLHKEVMIDETFTNGSFTKQANNYVKEESMGMIEINFNAPIDNSCNDNNLNAQSTSGYNADNTQILEDNDNDNFFNSDEEGSVRNVPIPIKSIAKKLKEPEGEADGCILDAEYATMHAISRNEAQAAVEIMKMFGVGKHKCNVCDKPFSNENRLKIHMRMHDQYISGSHLCEICKFYYKSSFLLKTHMTEKHMYKYVCKKCPEVSFDRPMAKQHYISAHLEKRRKSNAEWDVSRPTWLSTKGGKRIKGVSAVKVVRKPAKKPDDFLICTPVRQEDQYSIIQERKNSRNYMEAPFKCELCFKGYREQMTYGKHMRKHDPIFSGNYQCDMCKLYFKDARKIYKHMTITHLFKLSCQFCSYVCFNKGQAHTHYMFHKNVTYKCPHCPMEFKKQSTRLTHVRIKHPSSFICNLCGHSYVSDSGLYCHRQLSHTAEELELSSQMQMDTSSENYCAECDVLFLSQAAFETHLGSSKKHATTNESITNSVRERARQTRAKKRPVGRGRPRRLPGDSDIVNNGVVTSTSCEIVSTHTRTHTSRPRRLPGGSDIVNNEVVTSTSCEILRDCEYTHTSRPRRLPGDSDIVNNGVVTSTSCEIVSTHTRTNTSRPRRLPGDSDIVNNGVVTSTSCEILRDCEYTHTSRPRRLPGGSDIVNNGVVTSTSCEILRDCEYTHTHKHEPPAPPARRLRHSQQRGRHFYQLRDCEYTHTHTHEPPAPPARRLRHSQQRGRHFYQLRDCEYTHTSRPRRLPGGSDIVNNGVVTSTSCEIVSTHTRTHTSRPRRLPGGSDIVNNGVVSSTSCEIVSTHTRTHTSRPRRLPGGSDIVNNGVVTSTNCEICNKFLVNDVQARKHYQTEHPGAEYLKRYMCDVCGHTTKQYANLMVHMRTHTNEKPYGCPHCDRRFSMPSNRDRHIVVHTGEKKYQCHQCHRRFTQSSAVKLHIQTVHLKIPYAPWDKKNRKRRKELEGAAGPISAVNVNLQPQPKLILDQDYLNAYINYNDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -