Astr032444.1
Basic Information
- Insect
- Agriphila straminella
- Gene Symbol
- -
- Assembly
- GCA_950108535.1
- Location
- OX467328.1:6639687-6640718[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00079 0.073 14.5 0.3 2 23 28 50 27 50 0.95 2 10 0.025 2.3 9.8 0.0 2 23 75 97 74 97 0.95 3 10 0.00099 0.091 14.2 0.7 2 23 120 141 119 141 0.96 4 10 0.0016 0.15 13.6 1.6 1 17 145 161 145 164 0.94 5 10 0.027 2.5 9.7 0.3 3 20 175 192 174 194 0.92 6 10 1.3 1.2e+02 4.5 0.3 5 23 205 224 197 224 0.85 7 10 0.17 15 7.2 1.3 2 19 232 249 231 254 0.84 8 10 0.00091 0.083 14.4 1.0 6 23 263 280 260 280 0.95 9 10 1.4e-05 0.0013 20.0 1.7 1 20 286 305 286 308 0.94 10 10 4.2e-06 0.00038 21.7 3.5 1 23 314 337 314 337 0.97
Sequence Information
- Coding Sequence
- ATGGCCGTGCCGAGGCAGAACGCCGAGATAATAGTCCGATTCACGACCGCATATCCGTTCAAGCTACCAGAATGTGCCCTGGTCTGCGTGTACTGCCGAGAGGAGTACGAAAACGCGTCCTTGTTTAGAGAGCACATGCGCAATTTTCATTCAGAATTCGTAATACGCGTAGCCTTCGCTCATATCCCCGAAGGATATTTAAAAGTCGATTGCACCGAGCTTAGTTGCAGAATTTGTTCTGAACCGTTTCCCTCTTTAGAATCGATGGCTGACCATCTCATAAAAGtccacaataaaaaaatctatctgAATTACGATTTGGGAGTCCAGCCCTTCACGTTCCATGACGATACGTGGGTGTGTGCCATCTGCAAAACGAAGTTATCTACATTACGCAATCTCAGTAGACACACACAATctcattttacaaaatataccTGTGAGCAATGCGGTAAATCTTATTTCACGTCGTCGTCACTTCGATTCCATTCTTTTAACTGCCAGATTGGAACATTGCGTATATGTGTCAAGTGCAAAAAAACTTTTCCGTCTTTAGAAGATAAGCGGAAACATGTATCAGAATCTCGCCGATGCTGGCCTTATGGTTGCATAGATTGTGGTGAAAGGTTCATTtccgttactttaaaaaaagaacataGAGCCAAAGTTCATGGCGAACAATCAAGATCCATTGTTTGTTCTGAATGCCGTGAAGTTTTTCCAACCAGGAGCAAATATCGATGTCATTTCGTGATTACTCACACAAAAGAATACTTCTCGTGCTCTTGCGGTAGAAAATTCGATACGAAAAATAATTTGGAAAGGCACAGAGTCGTACACACTAAGGAGAAAATCTTCCATTGCACGTCTTGTCCTAAAGCTTTTTCtaggaaaaaaaatctgatacAACATATGTGGATACATAGTGAGGTCAAAAGGTTCGAGTGCAAAGAATGTGATAAGAAGTTTAATCAGAGGGTGACTTATAAAACTCATATGAAATCTTATCATCCAGATGTTGAGATTTCTTGA
- Protein Sequence
- MAVPRQNAEIIVRFTTAYPFKLPECALVCVYCREEYENASLFREHMRNFHSEFVIRVAFAHIPEGYLKVDCTELSCRICSEPFPSLESMADHLIKVHNKKIYLNYDLGVQPFTFHDDTWVCAICKTKLSTLRNLSRHTQSHFTKYTCEQCGKSYFTSSSLRFHSFNCQIGTLRICVKCKKTFPSLEDKRKHVSESRRCWPYGCIDCGERFISVTLKKEHRAKVHGEQSRSIVCSECREVFPTRSKYRCHFVITHTKEYFSCSCGRKFDTKNNLERHRVVHTKEKIFHCTSCPKAFSRKKNLIQHMWIHSEVKRFECKECDKKFNQRVTYKTHMKSYHPDVEIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00383015; iTF_00036025; iTF_00036029;
- 90% Identity
- -
- 80% Identity
- -