Basic Information

Insect: Agriphila straminella
Gene Symbol: -
Assembly: GCA_950108535.1
Location: OX467328.1:1713871-1741704[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.75 69 5.2 0.0 3 23 126 146 124 146 0.95

2 11 0.003 0.28 12.7 2.8 1 23 253 275 253 275 0.99

3 11 2.4e-06 0.00022 22.5 0.7 2 23 413 434 412 434 0.97

4 11 0.00018 0.016 16.6 2.8 1 23 440 462 440 462 0.98

5 11 0.55 50 5.6 0.2 1 14 577 590 577 592 0.85

6 11 0.00083 0.076 14.5 2.6 1 23 1030 1052 1030 1052 0.97

7 11 0.021 1.9 10.0 5.1 1 23 1061 1083 1061 1083 0.99

8 11 0.00021 0.019 16.3 0.6 2 23 1130 1151 1130 1151 0.97

9 11 0.031 2.8 9.5 6.3 1 23 1168 1190 1168 1190 0.96

10 11 1.9e-06 0.00018 22.8 0.7 1 23 1196 1218 1196 1218 0.98

11 11 8.4e-06 0.00077 20.8 4.3 1 23 1224 1247 1224 1247 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.75	69	5.2	0.0	3	23	126	146	124	146	0.95
2	11	0.003	0.28	12.7	2.8	1	23	253	275	253	275	0.99
3	11	2.4e-06	0.00022	22.5	0.7	2	23	413	434	412	434	0.97
4	11	0.00018	0.016	16.6	2.8	1	23	440	462	440	462	0.98
5	11	0.55	50	5.6	0.2	1	14	577	590	577	592	0.85
6	11	0.00083	0.076	14.5	2.6	1	23	1030	1052	1030	1052	0.97
7	11	0.021	1.9	10.0	5.1	1	23	1061	1083	1061	1083	0.99
8	11	0.00021	0.019	16.3	0.6	2	23	1130	1151	1130	1151	0.97
9	11	0.031	2.8	9.5	6.3	1	23	1168	1190	1168	1190	0.96
10	11	1.9e-06	0.00018	22.8	0.7	1	23	1196	1218	1196	1218	0.98
11	11	8.4e-06	0.00077	20.8	4.3	1	23	1224	1247	1224	1247	0.98

Sequence Information

Coding Sequence: ATGAACCAAATGCCTTCAGACATGGATCCGTTGAGTTACGAACAGAGTTACCCTCAATATGAAAGTTATAACGGTCCGCCACCAGCGGTACCAAACTGCAACTTTAATTTGAAAGTCGAGCAACAACAGTCGGTGAACACAGAATTTTACAACATTTTCAACGCATTACAGCAAGAAATGTTAAACCAGCAAGACAAAGTATTAACaaacttaaacaataaaaagaatGAACCGAACGTATCACATTGTTCTACAAAACAAGACACTAAACCTATATTAAAAGTCCAAGCAGAGAAACGGAAAAAGCCGTCAAAAGGCAGAACAAGTAAATATTGGTCGGAGAAAATTAAAGACGATAATTTCAAGTTCTACGGCTGTGCGGTGTGCAATATCAGTTTTACAGCTCTCCCCGAGTTAGATCAACATGTAACGGTGCACAAAGATAGGTTAACAAGCTACGATTTAAAGatcaaaaacttaataaaaagaaaaaagatgaagaaagaaaaaaagaaaaagaaaaagctcGGTAGTAAAATCAAAACCGAAGACATTCCGGATATTGAAATTAAACCGGAAGACGGTTACATTGGTAATGAGAAAGCTACCGATTTTTTAAATCAGCCTACGAATAATGAAAATCTGCCTACGAATACGGAAGAAAAGAAGGATATTAAGAGTGAGATCGGTTGTAAAGATAACGGTGAAAATATGTCTGATTCAGAACAGCAATCGTTGATAAACTTACAGAAGATCTATAAATGCTTCGCTTGCCAAAAACAGTTTACGTTAAGTTACTACCTCAAACTGCATGTTCGGTCACATACagACTATAACGCAATACTGCCATACTTGAAAGAGCTAGAAGAAGAACTGAGAGAGAAGGCAGAACGGGCGGAGAAAGAGAAGGTGAAGGTCAATGACCCTTGGGACATGTGGGGAACCGCCGGGGACTTGGTGCCTAAgGAAGAAACTAAAGACCCCGATCTGGCCCCCGACCCGGCCCCCGGCGCCCCCGCGATAGAGGTGGTCAAACTGGACCCCCCCGACGTTGAAATTAAGGAGGAACCCGAAGATGCCCCCCTGGACACCCTGAAGTCGGAAGACGGGGATAGCGTTAAAGATGAGAGgtTATCGGATGACGACTATTTCCCCTCCAACACTTGGGCAGCGTCCCCCAAAATGGAGGACCCCCCGTCCCCCAAAACAAGGGGGGCTAAGTCCGCAGGCCCCCTAAAATGTACCGTTTGTGAGAAAACTTTGAGCACCGCTTCTTATTTGAGAATTCACATGAGAACACATACTGGAGAGAAACCGTTTAAGTGTTATATATGTGATAGGGGATTCATAACTTCTAGTAAAATGCATAGACACGTGTTGACACATGAAGAGAGCTGGGAAGGTGACGATGGCGCGTTGAAAGTTGAAGACATCAAACAGGATCCTGATGATGAAGATGATGAAAAAACGAAGACAAAgaAATTGGTGAAGAAAGCAAAAGCCAAATTCAACAGCAAATCGAAAGGCGACAAAGTGAAGAAATACAAGAGTCGGCCGCACTCCTGCGAGTTCTGCCAGAAGAAGTTCCTCCACCTGGAAACTCTGCAGgtCCATAAAAAGTGTCACGAAGGCGAGGAGTTGATCCTCAAGTGCGGCTTCTGCCTCGAAGTGATGTCGGACGATGGTAAGCTGAAGGAACATGAGGCCACCCACATCGGGCCCCGGCCTTACCTGTGCACCGTGTGCGGACGGACTTACAAGAAGAGAGAGACTATGGGCGTCAGTAGAACAGCACGAGCTACTTGGGGATTGCATCCAGAAATTATAAAAACCATTTATAAGGCTGTTATAGAGCCGATTATCCTCTACGCATCCAGTGTATGGTCTAAAGAGGTAACAAAAGCAATCTCCAGGAAAGCTCTCAACACTGTGCAAAAGGGTTTCGCGCAAAAGATTATAAAAGGTAACAGAACGGTATCCCTTAATGCTGCTTTAGTGCTGTCGGGGCTGCTTCCGCTGGATCTTCGGGTTCAAGAAGCCTCCCTGCTTTATGAGGCAAAGCGTGGGAAACCCCAGGCAGCACTATGTGGCAGAAAGGTAGAAGAGCGCGTCTCTTTGATGAGAGCCAGCCACCCTAGCAGGatgctaaattcaaaatttactTGTTTGGAAAACGCGGAAGAGGATGGTAAATTGGCAGAAGGTTTAGTGAAGATTTATACGGATGGTAGCAAACTGGAGGGGAAAGTTGGAGCCGCCCTGACCTGCTGGGAAGGGCTCAATGAAACGAGTACCCAAAAGTTTAAGCTGGAGCCATACTGTACAGTCTTCCAAGCCGAGCTGTATGCCATCCTCCAGGCAACCGAAATTATAATTGGCAAACAATTTAAAGAAACAGCTGTGCTTAGTGACTTGAGATCCGCTCTGCAGACGCTACTTGATCCGGACTCATCGCAACCAATCACGAAGGCAATCCAGGGTAACCTACAGACGCTGAGAGACAACCAACAACTAGTCTCTCTTTACTGGATTAGGGCCCATGTTGGAGTGAAAGGGAACGAGAGGGCGGATCAACTGACGAAGGAGGCGGCTCTCGAGTTGACAACTAAATCGGACTATGGCTGCGGTCCCATCTCGTTCGTTAAGCGGCATATTCGCGCGGAAACGATTGAGAAGTGGGACTGCAGATATAAATCGGAAAGCACGGGGGAGACCACGAAGGTCTTTTTTCCTGATGGGGTGGAGGCATATAGCGTGGTGAGGAAGATGACCATCGATCGCTTGGCATCGCAGATTTTGACCGGTCACGGTGGGTTCTGCGCATACTTGCACAGATTCAAGCGTAGGGACAGCCCATCGTGCGTTTGCGACCCGGTTGGGAGCGAGGACATCTTCCACATCGTGCTAGACTGTCCTTTGCACAGCGTTGATAGGTACACTCTACAACAGAAACTAGACACAAAACTGAGCAAAGACACCCTGAAAGAGATAAttagaaacaaaaaagaaagGAAACAATTCATGGAATTTGCAAAATTAGTGGCCGAGAAAGTATACCATAGAAAACAACACAAACAGGACAAAGTATTCCAATGCAATGTTTGTTCTAAAAGTTTCAACGCCTCCTGCAAGTTGGAGCGCCATCTAGTGAGCCACAGGACGGACAAATTTGTACTCAGATACGAGTGTCCGGTTTGCGCGCACATGTTCCACACGAAATATCACGTGCAAATGCATCTGTCGACGCACCAGAAGGAGGGATTaATCGTCGAAGAAAATCGCAACGAAATACTAGCTATGGTGTTACAAAACGCGAGAAAATTCCCAAAACAACAGGACGGGAAGGCAAACACACCAGATTTAATACCCAACGACGAAAGATCAAGAGTTTGCAACATTTGCGGGGAAGTGTTCCAACATTTCTACTACTTAGAAGAACATTTGAAAAGTCACGGCTCATTAATAGCTATAGAAGACTTAAATAAGGCCGAAGAGAAAAAACACGTTTGCCAAGTTtgcaataaaagttttaaactgCACTATTATTTGAAGTTACACAGTTTTacacataccaaagaaaaaccGTACATCTGCCAGCAATGTGGTAAAGGTTTCATTACCAAAGGCAAGTTAAAGAGACATTTAGAAACTCATACGGGTTTAAAGAAATACCAATGTCATATATGTTACAAGTTTTTCACTAGAACTAGTTATTTGAGAATACATGTTAGAACTATCCATGGAACACAAGATTATAACTTTAGGTTACAGAAAGGATATTCCCTGGACGTGCAGAGTTTATACCAAGACCAGGATGTGcaaatataa
Protein Sequence: MNQMPSDMDPLSYEQSYPQYESYNGPPPAVPNCNFNLKVEQQQSVNTEFYNIFNALQQEMLNQQDKVLTNLNNKKNEPNVSHCSTKQDTKPILKVQAEKRKKPSKGRTSKYWSEKIKDDNFKFYGCAVCNISFTALPELDQHVTVHKDRLTSYDLKIKNLIKRKKMKKEKKKKKKLGSKIKTEDIPDIEIKPEDGYIGNEKATDFLNQPTNNENLPTNTEEKKDIKSEIGCKDNGENMSDSEQQSLINLQKIYKCFACQKQFTLSYYLKLHVRSHTDYNAILPYLKELEEELREKAERAEKEKVKVNDPWDMWGTAGDLVPKEETKDPDLAPDPAPGAPAIEVVKLDPPDVEIKEEPEDAPLDTLKSEDGDSVKDERLSDDDYFPSNTWAASPKMEDPPSPKTRGAKSAGPLKCTVCEKTLSTASYLRIHMRTHTGEKPFKCYICDRGFITSSKMHRHVLTHEESWEGDDGALKVEDIKQDPDDEDDEKTKTKKLVKKAKAKFNSKSKGDKVKKYKSRPHSCEFCQKKFLHLETLQVHKKCHEGEELILKCGFCLEVMSDDGKLKEHEATHIGPRPYLCTVCGRTYKKRETMGVSRTARATWGLHPEIIKTIYKAVIEPIILYASSVWSKEVTKAISRKALNTVQKGFAQKIIKGNRTVSLNAALVLSGLLPLDLRVQEASLLYEAKRGKPQAALCGRKVEERVSLMRASHPSRMLNSKFTCLENAEEDGKLAEGLVKIYTDGSKLEGKVGAALTCWEGLNETSTQKFKLEPYCTVFQAELYAILQATEIIIGKQFKETAVLSDLRSALQTLLDPDSSQPITKAIQGNLQTLRDNQQLVSLYWIRAHVGVKGNERADQLTKEAALELTTKSDYGCGPISFVKRHIRAETIEKWDCRYKSESTGETTKVFFPDGVEAYSVVRKMTIDRLASQILTGHGGFCAYLHRFKRRDSPSCVCDPVGSEDIFHIVLDCPLHSVDRYTLQQKLDTKLSKDTLKEIIRNKKERKQFMEFAKLVAEKVYHRKQHKQDKVFQCNVCSKSFNASCKLERHLVSHRTDKFVLRYECPVCAHMFHTKYHVQMHLSTHQKEGLIVEENRNEILAMVLQNARKFPKQQDGKANTPDLIPNDERSRVCNICGEVFQHFYYLEEHLKSHGSLIAIEDLNKAEEKKHVCQVCNKSFKLHYYLKLHSFTHTKEKPYICQQCGKGFITKGKLKRHLETHTGLKKYQCHICYKFFTRTSYLRIHVRTIHGTQDYNFRLQKGYSLDVQSLYQDQDVQI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -