Astr020487.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agriphila straminella
Gene Symbol
-
Assembly
GCA_950108535.1
Location
OX467317.1:2657715-2673935[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 3.7 3.4e+02 3.0 0.3 2 23 6 27 5 27 0.95
2 13 0.002 0.18 13.3 0.0 2 23 1007 1029 1006 1029 0.95
3 13 1.1e-05 0.001 20.3 2.5 2 23 1132 1153 1131 1153 0.97
4 13 0.0001 0.0091 17.4 3.5 1 23 1159 1181 1159 1181 0.99
5 13 0.01 0.95 11.0 2.8 2 23 1188 1209 1187 1210 0.95
6 13 0.14 13 7.5 0.3 5 23 1223 1241 1222 1241 0.96
7 13 0.023 2.1 9.9 1.1 3 23 1248 1269 1247 1269 0.96
8 13 0.071 6.6 8.4 0.1 2 23 1286 1306 1285 1306 0.96
9 13 0.00016 0.014 16.7 1.2 1 20 1312 1331 1312 1334 0.91
10 13 0.018 1.6 10.3 0.4 1 23 1342 1364 1342 1364 0.98
11 13 0.0065 0.59 11.7 7.2 1 23 1370 1392 1370 1392 0.98
12 13 7.5e-06 0.00069 20.9 1.3 1 23 1398 1422 1398 1422 0.98
13 13 0.00075 0.069 14.6 5.5 1 23 1428 1450 1428 1451 0.96

Sequence Information

Coding Sequence
ATGGAGCAGCTGGTGCAGTGTCCCGTATGCACACTTTATTTACACAATGGCATGAGTTTGGAATCCCATTTAGATACACATCCCAAAGACCAGGTTATCAAAGCTTTATGCAGTCTTACTAATAAAAGTGGCAGTAGCTATGGAAGTCGAACTTCAACACCGCTGCATTCAGAGCGTTCATATAGAAGCAGGTCTCGTACACCAGCCGCAGAAGACCGGTGGTCTAGTTCACACCGCAGTAATGAAAATGATAGGTACTGGCGGAGAACACCTAGCAGAACATCCAAATCAAGTCAGTTTCTTTCAAATTCACGTACTGGTACACCTGAAACTAGAATTGGAGATATTAACTTTGAGAACAATTTGACCAGTTCTGTTCCTTATGCAGGCACACCTTATTCAATAAAAAGTGATAAGACTCAGCAAGCATATTCCAACGCTCCAACATTATCAGAATTTGACCAACAGTATGTTTACTACCAAGATACACAAGATGacagagaaataaaatattcccgCAGTGCAGAATATGCTCCATTAGATAGTACTAGCAGTGTTTTTACTCACCACACCTTGCCAGTGGTGAGCCCTGGTGTCAAACTACAATCTACCTTAGTGCCTGCTGCACCCAGAAGGGGGAGTGAGAGTCTTGTGAAATTGTTACCAAAACCAAATAATATACTTGTGAAGACAAATGTTGGTGGGGTTCAGTACATAACCCCGGGAGTGAAGCCGATGCATGTGATGGTCCCTGCAGCACCAACATTTGTCCAAAAGAATGTACAAAACAACATGATAGTGACGAGCACCATCCCGGGTGCACAGATGGTAGATAATAAAGTTGTGGCTGCCCCACTGTCCACAAATCAGTTTAACCAAATGACAAGTAGCACTTTTACTCCTGGTACTACAGTTGTACAAAATTCTCAGATTATATATAGAGAAATGGTTCACAACATTGATGGTAAAAGATTTATATCATGTGTGCCTTCAGTACTTAGCCATGAGAATGTAACTAATGTTGCTCAAGGAACGTCTATGTACCAAAATGTAATGGTTCTTGATCAACTGGGGAATGCCTCTTGCATGTACACCAACCCTCAGACGATTGTACCTAAGCCATGTACCTCATCTGTGTATACTGATAACTTTTCACATTTACCAAGCAGCACAACTGTACACGTTGACAAGACAATATCAAATGCTCACGAATCAAACAAAACTTTGATCATAGAAGTAGGTCCCATTGTACCTTCTTCTTCAGAAACCTCTGTAGCAGGTACTAGTGCTGTCAGTACACAAGCAGATATCAGTCTTACCAGAGCAAGTAAATTAGACAAGAGAGATAAACTGGAAAAAAGTGAAACGCCTGGACCAAGCAAGGGGCTGAAGATTCTAAGTAATATAAAGGTGGAAGTGCCAGTCCAACATAACAAAaacatggtaaatactgtgatggATCTGACTGGTACTAATGAACATGAATATGTTGAAAGGCCCATCACTCCAGAAAAGATTCTTCCTGACTTGGATGATAACAACGATAACATGGACACCAGTCAAATTATGTCAGATGACTGCACACAACCATCAATATCAAGAAGTGATAGTGTAGTATCTTATACATTCTCTGTGATCAAAAATGTTGGAAATCCACCATCATACAAAGAAAGCCAGCCAAGTATAGTTGATAGCAAAATAGAAAATGAGTTTTCAGACAGCTGTCCAGTTCCAGATTTAATATGTAATGAGAAACCATCAATATCACCATGTAGTGAATTATCAGAAAATGGAGAAAATTCAAATGACCACACTTCTGTTACCCCTAAATCCAACAGTGATCCGCAAACAAGTTTAGATGCCGATTACGAGAGCAAACCTGTTCTCCAGAAGCCCTACAGACATAATGCACTGaggttaaataatatttttgtaaagaagcataaaaaaatcttacagaTAAAAAATGCCAAGCTATTTCCTGTCAACGGTAGCACCAGCCAGAGTGAAATTGAGCCAAGGGCCTCATCATCATCTTGCAAATCTCCAGAATACTACTcgataaacaaacacaaaatagAGAAAACAGAGATTCAAGAAAAGTTAAGCACTTTGAAAACCATAACAGTTGAGCAAATCACAATAGAAAATGAAGATCACCATGATTTTGACGCTGATACTGAAGAGCAATCTATGGACATTGAACCTGTGGCTTGCTCTAGCTCGAACCCACATGACCAATTTACAACAAGTGTCGATGTAGTGCAAGTAAAAGAGGAGGCGAATACTAGCAACGAAGACAGGTTTAGTAATGAGAACAGTCTATCTAACCGGGGCAGTATGACCCCAATCGAAACTTTGCGCCCGATCAATGTTATAACTTACGGCAACATGGCACCAGGAGACTTCGATGACGAATCAAATCATAGGGAACTGTTGGAACTTGAAGCTGCTTCTAAGAACAAGCAGTTCGTCAGTATGATGAATGAGAACTACTTTGGAGATAATATCTATGCTGACTATTTCACTCCAGACAGGGTAACGTTGGATTCAGAGAGAGTCCCAGGATTTTCAAAGGAAGTTCCAAAAGATGGTATGTACATTTGGGGTGAGTCGTCCCATAAGGAGAGTGAATTCGTTTTGCCTAATTTTATACATGAGAGTTACAAGATAGCTGAAAGCAGTGGGATCGATTATACGGAAATCGGGAATAGGTCGGGGCACATGGAAAGGGACCGCGACAGCAAGGCGGATGTGCTGAGCGTAGGGCGCAGCGACGGGGAGCCGCCGCTGAACATCTGCGCCGACGAGCGCATGCCGCCGCGCGGCGAGCTCAGCGGCCAGGAGAGCAATGGCGACATGGAGTCGCCATGGAGTGGGatttacCCCGACGTTCCGGTGGCTGAGCCTTACGATTTGATCGCGCGAGAGAGTTGGGTCTCTGACGGCTCGGAAATGGATTCAAATGAAAGGAGAGATAATTTgGAAGAAGAGTTATACCCGAAAGTCCGCGGCAGTGTGTGCGCGCAATGCGGCGCCAAGTTCGTGTCGGCTAAAGAGCTGCGCGTGCACAGGGCGACCGCGCACGCGCTCAACGAAACCGCGGACAAGACATACAGCCGCCTGCTCACTGCGCGCGCCATCAAGAAGGAGGAGAAACCCGACGATACGGTGCTACAAGCGGCAGCGAGCATGATGCCCATAGACTCGAAGGAGGCGATGGCCACGACGATGCTGCAGGTGTACGACGCAATGGAGGCCAAGCCTAAGCTCGAGGCGCTCATCAAGCAGGAGCCCAAgcagcgccgccgccgcgactACGTCTGTCCCACCTGCAAGGTGGACCAACTAACCGAGCCGGCGTTCCACGCCCACCTGAAGCTGCACCCGCTGGAGTGCCTCACGTGCGGCAAGTGCTTCTTCCGCCGCGCCAACCTGCAGCTGCACATCAAGACGCATCTCGGGATCAAGAACTACAAATGCGACGTGTGCGAGAAGCGGTTCATCACGAAGCAGAAGCTGATGGAGCACCACAACACGCACACGGGCCGCGCGCCCGTCAAGTGCACCGTCTGCGACGACACCTTCCGCCGCTACTCCAACATGCTGCAGCACCGGGACCGCCATCACTTTCAGAAGAAGCCCAaagtccgcgacttcgtctgccaATGCGGCGCAATATTCCAGTCGAAGGCCAAACTGCAGTGGCACCGCGAGACGCACGACACCCGCCCGAAGGCGTGCCTCTACTGCAGCGACAAGTTCGTGCACGCCGCCTCGCTCACGAGGCACGTGAGGCGCACCCACAACATGTACTACATGTCGGAGAAACATAAAGGGAAGGCGGAGAACGTGCCGTGTCCCGTTTGTAAGCAGATATACCTGCGCACGAACCTGCGCGCGCACCTGGCGACGCACGCGGGCGCGCGCGCGCACGTGTGCGTGATCTGCAACAAGGCGTTCACCACCAAGTGGAACCTGAAGCTGCACCGCTGGACGCACCTCGCGCGCTCCGCCAAGCCATACCGGTGTGCTCTGTGCAAGGGCGCCTTCATCCGTCACACGGAGTACGTGGCGCACATGAACGCGCACCGCGCCGTGCGCCCCTATACGTGCAACTACTGCGGCTGCCAGTTCATACGCAAGTACAACTGCCAGCGCCACGTGCGCGAGCACGAGAACGACAAGAAGTACGTCTGCAAGGTGCCAGAGTGCGGTAAGTCGTTCCACCGTAGTTACTACCTATCGGAGCACATGAAGGTGCACAGCGGCGCGCGCCCGTTCTCGTGCAACATCTGCGGGAAAACCTCTAGCAACAAGTCCAACCACAACAAGCACCTCAAGATACACCACGCCAGGGAACCAGTCGCTACCGAAGCGTAA
Protein Sequence
MEQLVQCPVCTLYLHNGMSLESHLDTHPKDQVIKALCSLTNKSGSSYGSRTSTPLHSERSYRSRSRTPAAEDRWSSSHRSNENDRYWRRTPSRTSKSSQFLSNSRTGTPETRIGDINFENNLTSSVPYAGTPYSIKSDKTQQAYSNAPTLSEFDQQYVYYQDTQDDREIKYSRSAEYAPLDSTSSVFTHHTLPVVSPGVKLQSTLVPAAPRRGSESLVKLLPKPNNILVKTNVGGVQYITPGVKPMHVMVPAAPTFVQKNVQNNMIVTSTIPGAQMVDNKVVAAPLSTNQFNQMTSSTFTPGTTVVQNSQIIYREMVHNIDGKRFISCVPSVLSHENVTNVAQGTSMYQNVMVLDQLGNASCMYTNPQTIVPKPCTSSVYTDNFSHLPSSTTVHVDKTISNAHESNKTLIIEVGPIVPSSSETSVAGTSAVSTQADISLTRASKLDKRDKLEKSETPGPSKGLKILSNIKVEVPVQHNKNMVNTVMDLTGTNEHEYVERPITPEKILPDLDDNNDNMDTSQIMSDDCTQPSISRSDSVVSYTFSVIKNVGNPPSYKESQPSIVDSKIENEFSDSCPVPDLICNEKPSISPCSELSENGENSNDHTSVTPKSNSDPQTSLDADYESKPVLQKPYRHNALRLNNIFVKKHKKILQIKNAKLFPVNGSTSQSEIEPRASSSSCKSPEYYSINKHKIEKTEIQEKLSTLKTITVEQITIENEDHHDFDADTEEQSMDIEPVACSSSNPHDQFTTSVDVVQVKEEANTSNEDRFSNENSLSNRGSMTPIETLRPINVITYGNMAPGDFDDESNHRELLELEAASKNKQFVSMMNENYFGDNIYADYFTPDRVTLDSERVPGFSKEVPKDGMYIWGESSHKESEFVLPNFIHESYKIAESSGIDYTEIGNRSGHMERDRDSKADVLSVGRSDGEPPLNICADERMPPRGELSGQESNGDMESPWSGIYPDVPVAEPYDLIARESWVSDGSEMDSNERRDNLEEELYPKVRGSVCAQCGAKFVSAKELRVHRATAHALNETADKTYSRLLTARAIKKEEKPDDTVLQAAASMMPIDSKEAMATTMLQVYDAMEAKPKLEALIKQEPKQRRRRDYVCPTCKVDQLTEPAFHAHLKLHPLECLTCGKCFFRRANLQLHIKTHLGIKNYKCDVCEKRFITKQKLMEHHNTHTGRAPVKCTVCDDTFRRYSNMLQHRDRHHFQKKPKVRDFVCQCGAIFQSKAKLQWHRETHDTRPKACLYCSDKFVHAASLTRHVRRTHNMYYMSEKHKGKAENVPCPVCKQIYLRTNLRAHLATHAGARAHVCVICNKAFTTKWNLKLHRWTHLARSAKPYRCALCKGAFIRHTEYVAHMNAHRAVRPYTCNYCGCQFIRKYNCQRHVREHENDKKYVCKVPECGKSFHRSYYLSEHMKVHSGARPFSCNICGKTSSNKSNHNKHLKIHHAREPVATEA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00383014;
90% Identity
iTF_00284784;
80% Identity
-