Astr032407.1
Basic Information
- Insect
- Agriphila straminella
- Gene Symbol
- -
- Assembly
- GCA_950108535.1
- Location
- OX467328.1:6404740-6415012[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5.6e-05 0.0051 18.2 1.0 1 23 274 297 274 297 0.95 2 15 0.039 3.6 9.2 0.1 2 23 322 344 321 344 0.94 3 15 0.0038 0.35 12.4 1.0 1 23 392 414 392 414 0.97 4 15 0.041 3.8 9.1 1.0 1 23 419 442 419 442 0.95 5 15 0.13 12 7.6 2.7 1 23 449 472 449 472 0.95 6 15 3.2e-06 0.0003 22.1 2.2 1 23 479 502 479 502 0.98 7 15 6.8e-07 6.2e-05 24.2 2.3 1 23 508 530 508 530 0.99 8 15 0.023 2.1 9.9 0.9 1 23 606 630 606 630 0.93 9 15 0.12 11 7.7 0.4 2 23 659 681 658 681 0.95 10 15 0.02 1.8 10.2 1.4 3 23 704 724 702 724 0.96 11 15 0.0074 0.68 11.5 1.8 1 23 728 750 728 750 0.98 12 15 2.3e-05 0.0021 19.4 0.3 1 23 755 778 755 778 0.96 13 15 0.0035 0.32 12.5 0.2 2 23 815 837 814 837 0.95 14 15 0.0016 0.14 13.6 2.4 2 23 844 865 843 865 0.97 15 15 0.00027 0.025 16.0 2.1 1 23 871 893 871 893 0.97
Sequence Information
- Coding Sequence
- atggagcCTTCCTCGGAATCATCTAAAATTGATATTAACACGTTTTATGGTAAATGCCGTTGTTGCCTTGATTATGGTTATATGAAAAGTATGTGGTCCGAATACGAACGGGACGGGTTTCGGGAAATTTACGGAGAAATGATGATGGAGACTTTTTCCGTAACTTGGGAGTCCCTGGATGACTCGCAAGATTACATCTGCGAGCCGTGCGTGCTTCGGTTGCGGGACGCTTACGACTTCAAGAAAGAGGTGCTGGCATCTGAGCAACTCATGTTTGAGGATTTTGATGATTTAGACGAAAACTCAACTAAAGTTGAAGTGTTGGaagattttgatgattttgaacAGGATAATGTTCCGGAAGATGACTCGGAAGACAAGCCTAGTGTGAGCGAGACAGAGTATTACGAAGTGGAATATTTGGAAGATGAAATAGAAATTAGTGAagAAACTGCTCTCGCAACAACCAACGCGGAACAGGAGCAACCCAAAAAAAAGCTTAAATGGCCGCAGAAGAAGAAAAGGGGGGAAATAAAAAGACCATACAAGAATTACTCGGCAGAAGAGTTGCAGCATTGTCTAGAAGCTGTTAGAGAGAAATCTATGAGCATCACGGAAGCGAGCGAGCTGTTCAGGATTCCGAGGAAGACTATCTGTGCTAAACTCAACGAGCAGAGCAAAAAGAAACCAGATACTCCGTGGGTTTGCGCAAGAGGACTGCGGCATCCGATACCAGAAGTTAAGAGGCACAGGGAGAACTTACGGGCAGTTCTAGAATATTCCAACGCAACCCCCTTTAAGAGCCAGACTGGCATGTTCTTTACTTGCAACTTCTGCCAAAAACCATTCACACAACCTAAAGCACTGAAAGAACACACTTTACAGCTACACGAATATGAGTCTATAGCGTCTAAGATTAAAGTCTCTTTTGGGTTCAGCATCAAATTGGATGTCACAGGCCTTGAATGCAAACTTTGCGGTGAAGACTTCTGTTTGCTTGAAGATATGATGGCACACTTAGCTATCTATCATGGCATAATGATACATACAGATGTGCCCAACCAAATGGTCCCATACAAGTTTGACAGCAAAGAAATGAAGTGCGCCGTATGCTGTCACAGTTTCAACTTTTTCAAGTTGTTAGCGGAGCACATGAGCGAGCATTACCGCAACTTCGAGTGCGAATTGTGTGGCACTCCCTTTATCAATAAGCAGAGATACAAGATGCATAAGGAAAGGCATAAATCTGGAGTGTACTTTTGCAGTTTTTGTCCGAAAGCGTTTGACAACAAAATGAGGAGACGCGACCACGAAAGAGTTGTCCACGTGCACAACAAAAAAACGCACAAATGCAGTTACTGCGCTGAGAAATTCTCGAATCCGGTGAAGAAATCTGAACATGAGAGATCATTCCACGGAGGGACTTACAGAATTTTTAAGTGTCACGATTGTGGCAAAGAATTTGACAATAACACAGCTTTGAATATCCACACGAAGAAGATGCACCCCATATCAAAACCATATCAGTGTTCGGAGTGTGATACGTCTTTCTATAAAAAATCTTCGCTGTCCAAACACATGGAAACACATAAAGCCAAAGAAATATCGCATCACGTGATAAAGGAACCGGAAACCAGACGCGAAGAAATAAAGAAGTACCTTTGCATATTTTGCGATGAAAAATTTTCTAATAAACaGACCCCAGACGAGATCCAAAAGGCCATAAACTATGAGAAACAGCAGATTTTCATCGGCGAGATCAAAAAAGTTCTCTCGTTTACAAACGCGTTGCCGTTCAAGATAAAGAACGGAAAATACTTCTGCCCGTATTGCCACAGGGACAGTTTCGATGACCCAGATGATATGCGGATTCACATCAGATCAACCCACGAAGAAATCTGGCTCAAAAACATTGACTTCGTGCTCCGACCACATTTTCTGAACGAAATCTTGAGGATAGACATCGAAAATCTGCAGTGTAGAGTGTGCGATGTACCCATCAAAACCTGGAATGATATGTTCCACCATCTCAAAGAAATACACGAAATAGAAATGGACCAATCATACGCGAAACTTGTACCCTTCAGATTGCGAAGGGAGTTCATGCATTGCGCCCTTTGCGAAGAGAGATTCataaatttttcgtttttagacAATCATATGAACTCACACTATTGTAACTACATGTGTTCGGATTGTGGGGAGTTTTTTTTAACGGAAACCAGGTTAAAACACCATTTGCAAATACATAACACGGGTAGATACCCTTGCGAACAGTGCGGTAAAATTTTCACCTTagaaaaatacttgaaaaagcATCAAGCTATGGTCCATAAGaagtttaaaacattaaaatgctCGTATTGCCTCGAACGGTTTCATGCAGAGTACGAAAAACATATGCATGTAGTTGAACATCACAATGAGAAAGTTAGGATTTCCACATGCGAAATTTGCGGGAAAACTTTCGATTGGCGCCCTTATTACTTAGCACATTTAAGGAAAGTGCATTGTAGGGATAAAAAGAATAAGTGCTCGTACTGTGCTAAGGGATTCGTTTCTAGACACGAGTTGAAAATGCACGAGCAGAGACACACGGGGAGCGGGAAACACGTTTGTACGCAGTGCGGGAAGAACTACGTTACTATGATGGAGTTGAGGAGCCATTTGAAGAGACATTTTAAAGAGGACGGTTTTTTTTCGTGA
- Protein Sequence
- MEPSSESSKIDINTFYGKCRCCLDYGYMKSMWSEYERDGFREIYGEMMMETFSVTWESLDDSQDYICEPCVLRLRDAYDFKKEVLASEQLMFEDFDDLDENSTKVEVLEDFDDFEQDNVPEDDSEDKPSVSETEYYEVEYLEDEIEISEETALATTNAEQEQPKKKLKWPQKKKRGEIKRPYKNYSAEELQHCLEAVREKSMSITEASELFRIPRKTICAKLNEQSKKKPDTPWVCARGLRHPIPEVKRHRENLRAVLEYSNATPFKSQTGMFFTCNFCQKPFTQPKALKEHTLQLHEYESIASKIKVSFGFSIKLDVTGLECKLCGEDFCLLEDMMAHLAIYHGIMIHTDVPNQMVPYKFDSKEMKCAVCCHSFNFFKLLAEHMSEHYRNFECELCGTPFINKQRYKMHKERHKSGVYFCSFCPKAFDNKMRRRDHERVVHVHNKKTHKCSYCAEKFSNPVKKSEHERSFHGGTYRIFKCHDCGKEFDNNTALNIHTKKMHPISKPYQCSECDTSFYKKSSLSKHMETHKAKEISHHVIKEPETRREEIKKYLCIFCDEKFSNKQTPDEIQKAINYEKQQIFIGEIKKVLSFTNALPFKIKNGKYFCPYCHRDSFDDPDDMRIHIRSTHEEIWLKNIDFVLRPHFLNEILRIDIENLQCRVCDVPIKTWNDMFHHLKEIHEIEMDQSYAKLVPFRLRREFMHCALCEERFINFSFLDNHMNSHYCNYMCSDCGEFFLTETRLKHHLQIHNTGRYPCEQCGKIFTLEKYLKKHQAMVHKKFKTLKCSYCLERFHAEYEKHMHVVEHHNEKVRISTCEICGKTFDWRPYYLAHLRKVHCRDKKNKCSYCAKGFVSRHELKMHEQRHTGSGKHVCTQCGKNYVTMMELRSHLKRHFKEDGFFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -