Basic Information

Insect: Agriphila straminella
Gene Symbol: -
Assembly: GCA_950108535.1
Location: OX467327.1:1119095-1120654[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.1e-06 9.8e-05 23.6 1.1 2 23 86 108 85 108 0.95

2 14 0.0021 0.19 13.2 3.3 2 23 116 138 115 138 0.94

3 14 0.0021 0.19 13.2 2.7 2 23 145 167 144 167 0.93

4 14 2.1e-05 0.0019 19.5 0.5 3 23 176 197 174 197 0.97

5 14 0.0014 0.12 13.8 1.0 2 23 204 226 203 226 0.95

6 14 1.6 1.5e+02 4.1 4.6 1 23 233 256 233 256 0.97

7 14 7.4e-06 0.00067 20.9 4.7 2 23 262 284 261 284 0.97

8 14 5.7e-05 0.0052 18.1 0.4 1 23 299 322 299 322 0.96

9 14 0.026 2.4 9.8 0.9 2 23 330 352 329 352 0.96

10 14 0.00012 0.011 17.1 3.7 2 23 358 380 358 380 0.97

11 14 0.025 2.3 9.8 3.1 2 23 388 410 387 410 0.89

12 14 1.1e-05 0.00097 20.4 1.5 2 23 417 438 416 438 0.97

13 14 0.0069 0.64 11.6 5.1 1 23 443 466 443 466 0.97

14 14 0.43 40 5.9 0.1 3 20 479 496 478 498 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.1e-06	9.8e-05	23.6	1.1	2	23	86	108	85	108	0.95
2	14	0.0021	0.19	13.2	3.3	2	23	116	138	115	138	0.94
3	14	0.0021	0.19	13.2	2.7	2	23	145	167	144	167	0.93
4	14	2.1e-05	0.0019	19.5	0.5	3	23	176	197	174	197	0.97
5	14	0.0014	0.12	13.8	1.0	2	23	204	226	203	226	0.95
6	14	1.6	1.5e+02	4.1	4.6	1	23	233	256	233	256	0.97
7	14	7.4e-06	0.00067	20.9	4.7	2	23	262	284	261	284	0.97
8	14	5.7e-05	0.0052	18.1	0.4	1	23	299	322	299	322	0.96
9	14	0.026	2.4	9.8	0.9	2	23	330	352	329	352	0.96
10	14	0.00012	0.011	17.1	3.7	2	23	358	380	358	380	0.97
11	14	0.025	2.3	9.8	3.1	2	23	388	410	387	410	0.89
12	14	1.1e-05	0.00097	20.4	1.5	2	23	417	438	416	438	0.97
13	14	0.0069	0.64	11.6	5.1	1	23	443	466	443	466	0.97
14	14	0.43	40	5.9	0.1	3	20	479	496	478	498	0.93

Sequence Information

Coding Sequence: ATGGAGAATTTGGAACAAGTGTTCATAAAAGAGGAAAGGAGTGATTTCCGAATGGAAATAAAATTAGAAGTGGAACGTTGTAATGAAAATGACGCAAACAGTTCCACCAACAACATATACAGTACAGGTGAAAAATTTACCGACTCCCATTTAAAAGAAATCGCTTCAGACTCCGAGGatgataatcaaataaatcccGTTCGTACTATAGAGTTCGAAGGCACCGCTTTTGTTAACGGAAAGAGGCATCGCTTGAAATGCCCCCAATGTGACACAACTTTTAAAAATAGAGCTAATTTGAAAAGCCACTTGAAATATATACACCCTACCGATGATGAGATCAAGGAATGTAAAATATGCTTCAGAAGGTTCAAATCGTTAGTCCATCTTCGGTCTCATAATAACTCCGTTCACGCTAACATCAAGGAGGTCACGTGCGAACACTGTGGCAAAACCTTTTTAAATAAGAAGAGATTAAATAACCATATTTACTACACACACCCAAAACCAGAAGAAAATCAAATATGTGAAGTTTGCTCTAAAGTTTTTCCGACCAAATATAGGTTGAAAATTCATACACGTACTGTTCACCCCCAAGAACAGAAAGTGTCCTGTCCCGAGTGTAAAAAAGAGTTCAAATGTCCTATGCTACTGCAAAGACATTTGAAATGGGCACATCCTGCTGACGGCATGGCTTACAGATGCCAAGAATGTAGCAGACTACTTCCATCAATACATtgctataaaaaacatttgaaaaacgTTCACTGCCTAAACACTATGAAATGTGACTACTGCAACAAAGATTTTCGGTCAAACAACACTTTGCAACGACACATAAAAACTTGTCACGAAGGAGTAAAAATGGAGAAAAAGGAATATAAAGACGGACAGTTTGAGTGCGATAAGTGCGACAAGAAATTCAGTACGGTCACAGCTTTAGCATGGCATAAGGAGCGGTTGCACACTGAAAACAAAGTAAACTCAACATGCCAATTGTGTTCCAAAGAGCTTGGTGACCACAACGGACTGAAAAGGCATTTAGAGACGGTTCATTCAATGGAAACGGCTACATGTCACTTATGTTCGAAGACTTATAAATCGTTCTTGAACTTACAAAGGCATATACGAGTAACGCATGCTCCTCCAGAAGCGGCACAGACTTGTGAAATATGCCAAAAGACGTTCAAATGTTCCATGCATTTAAAAATACATGTTTACGCAGTACATCCGAAAGAGGGTAGAGTTAGTTGTGAGATTTGCAAAAAGGAGTTTTCCTCGAAAAAGTATTTGTTGAAACATGAAAAGACGCACAATAGCAAAGAGTTCCCTTGCCATTTATGTGGGcattattataaaagtttgCATGATGTTAAGCGGCATATAAGCAGAGTGCATAATAAAACACAGTTTGAAGTGCCCGTTTCGAGAAGTTGTTTGAAATGTGGCGTGGAATTTGATGACGATGCAAAGTTACATTCGCATATAGTGAGCTGTGGGAGTGAGACGGAGATATCGATTATTAAAGTAGAAATAGAGGAAGGAAGTGAACCTACCTGA
Protein Sequence: MENLEQVFIKEERSDFRMEIKLEVERCNENDANSSTNNIYSTGEKFTDSHLKEIASDSEDDNQINPVRTIEFEGTAFVNGKRHRLKCPQCDTTFKNRANLKSHLKYIHPTDDEIKECKICFRRFKSLVHLRSHNNSVHANIKEVTCEHCGKTFLNKKRLNNHIYYTHPKPEENQICEVCSKVFPTKYRLKIHTRTVHPQEQKVSCPECKKEFKCPMLLQRHLKWAHPADGMAYRCQECSRLLPSIHCYKKHLKNVHCLNTMKCDYCNKDFRSNNTLQRHIKTCHEGVKMEKKEYKDGQFECDKCDKKFSTVTALAWHKERLHTENKVNSTCQLCSKELGDHNGLKRHLETVHSMETATCHLCSKTYKSFLNLQRHIRVTHAPPEAAQTCEICQKTFKCSMHLKIHVYAVHPKEGRVSCEICKKEFSSKKYLLKHEKTHNSKEFPCHLCGHYYKSLHDVKRHISRVHNKTQFEVPVSRSCLKCGVEFDDDAKLHSHIVSCGSETEISIIKVEIEEGSEPT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00035029;
90% Identity: iTF_00035029;
80% Identity: -