Astr032441.1
Basic Information
- Insect
- Agriphila straminella
- Gene Symbol
- -
- Assembly
- GCA_950108535.1
- Location
- OX467328.1:6632936-6634989[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00058 0.054 15.0 0.4 2 23 28 50 27 50 0.92 2 13 0.0012 0.11 14.0 1.0 2 23 121 142 120 142 0.96 3 13 9e-07 8.3e-05 23.8 2.1 1 23 146 169 146 169 0.97 4 13 0.00086 0.079 14.4 0.0 2 23 212 234 211 234 0.94 5 13 0.016 1.5 10.4 0.1 2 23 259 281 258 281 0.95 6 13 0.0035 0.32 12.5 2.8 2 23 304 325 303 325 0.96 7 13 0.00062 0.057 14.9 5.9 2 23 330 352 329 352 0.92 8 13 0.02 1.8 10.2 0.2 2 20 358 376 358 378 0.93 9 13 0.0099 0.91 11.1 0.3 1 23 385 408 385 408 0.94 10 13 0.13 12 7.5 2.5 1 23 415 438 415 438 0.86 11 13 0.00069 0.063 14.7 1.0 5 23 446 464 444 464 0.94 12 13 3.3e-05 0.003 18.9 0.1 1 20 470 489 470 492 0.94 13 13 4.6e-06 0.00043 21.6 3.6 1 23 498 521 498 521 0.97
Sequence Information
- Coding Sequence
- ATGACCATCGCGAGACGAAACGCCGAAATAGTGATCCAATACACTACGGCATATCCTTTCAGGTTGCCAGAATGTTCAATAGTGTGTGTGTATTGTCATGGGAGTTTTACTGACTCGGCATTGTTTAGAAAACACATGGAAGACGAACACGTTGACTTCTCTGTACGTTCGGCGTTTGCGCATATTCCGGAGGGATACATAAAAGTAGATTGCACAGATCTTCGATGTAGGCTATGTCATGGTCGTGTCGAAAATTTGAAGAATGCTGCTTTACATTTACAAAAATACCATAGTATAACAGACCTTAATTTGCACTATGATCTCGCTATGCAACCCTTTAAGCTCGGAGATGATCGTTTATCGTGTGCTTTATGCAAAGAGAAGTTCGCTAGTCTTCGAACTCTTAGTCGACACACACAGACACACTTTTTGAAATACACATGCGAGTCGTGTGGAAAGTCTTACCCTTCAAAATCATCTCTAAGAGCACACATGAAACATTCTCATATAGGCAATCAAAAATTATGTCGGAAATGTAAAGAATTAAATCCAACGGCCGTCGTGAGGCGGAACGCCGAGATAATAGTCCAATACGCGACCGCATATCCATTCAAGCTACCAGAATGTGCCTTGGTCTGTGCGTACTGCGGAGAAGAGTACGAAGACGCGACCTTATTTAGAGAGCACATGCGCGATATTCATTCAGAATTCATATTACGCATGGCTTTCGCACATATCCACGAAGGATATTTAAAAGTCGATTGCACCGAGCTTAGTTGCAGAATTTGTTCTGAACCGTTTCCCTCTTTAGAATCAATGACTGACCATCTCATTAAAGTCCAcgacaaaaatatcaatttcgATTACGATTTGGGAGTCCAGCCCTTTACTTTCCATGACGATATGTGGATGTGTGCCATCTGCAAAATGAAGTGTTCTACATTACGCAATCTCAGCAGACATACACAAtctcatttttcgaaatgtacTTGTGAACTATGCGGTAAATCTTTTTTCACGGCGTCGTCACTTCGACAGCATTCTTTTACCTGCCATACTGGAACATTGCGTGTATGTGTTAAATGCAAGAAAACTTTCCCGTCCTTAGAAGCTAGGCGGAAACATATATCGGAATCTCCTCGATGCTGGAATTATCGTTGCATAGATTGTGGCGAAAGATTTGTTTCCAGCTCTTTAAAAAGAGAACACCGAGCCAAAGCACATGGCAAGCAATCTAGATCTTATGTTTGTACCGAATGCCGTGAAGTTTTCCCAACCAATCGCAAATTTCGATGTCATTACGTTATTACACACACAAACGATTACTTCTCTTGCACTTGCGGTAAGAAATTTGATACGAAATATAGTTTGGAAAAGCACAGAGTCGTACACACCACGGAGAAAATTTTTCCTTGCACGTCTTGTCCGAAAGCGTTTTCAAGGGAAAGGAATCTTATAGCTCATATGTGGATACATAGTGAAGTCAAAAGGTTCGAGTGCAAAGAATGTGATAAGAAGTTTAATCAGAAGGTGACTTATAAAACTCATATGAAATCTTATCATCCAGATGTTGAGATTTCTTGA
- Protein Sequence
- MTIARRNAEIVIQYTTAYPFRLPECSIVCVYCHGSFTDSALFRKHMEDEHVDFSVRSAFAHIPEGYIKVDCTDLRCRLCHGRVENLKNAALHLQKYHSITDLNLHYDLAMQPFKLGDDRLSCALCKEKFASLRTLSRHTQTHFLKYTCESCGKSYPSKSSLRAHMKHSHIGNQKLCRKCKELNPTAVVRRNAEIIVQYATAYPFKLPECALVCAYCGEEYEDATLFREHMRDIHSEFILRMAFAHIHEGYLKVDCTELSCRICSEPFPSLESMTDHLIKVHDKNINFDYDLGVQPFTFHDDMWMCAICKMKCSTLRNLSRHTQSHFSKCTCELCGKSFFTASSLRQHSFTCHTGTLRVCVKCKKTFPSLEARRKHISESPRCWNYRCIDCGERFVSSSLKREHRAKAHGKQSRSYVCTECREVFPTNRKFRCHYVITHTNDYFSCTCGKKFDTKYSLEKHRVVHTTEKIFPCTSCPKAFSRERNLIAHMWIHSEVKRFECKECDKKFNQKVTYKTHMKSYHPDVEIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -