Basic Information

Insect: Agriphila straminella
Gene Symbol: -
Assembly: GCA_950108535.1
Location: OX467313.1:9453808-9463277[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 4.7e-06 0.00043 21.5 1.1 1 23 460 482 460 482 0.99

2 8 2.8e-06 0.00026 22.3 1.7 1 23 488 510 488 510 0.98

3 8 8.5e-06 0.00078 20.7 0.6 2 23 519 540 519 540 0.98

4 8 1.1e-05 0.00097 20.4 0.6 1 23 546 568 546 568 0.99

5 8 1e-07 9.2e-06 26.8 2.1 1 23 574 596 574 596 0.98

6 8 6e-07 5.5e-05 24.4 1.3 1 23 602 624 602 624 0.97

7 8 0.00011 0.0097 17.3 7.2 1 23 630 652 630 652 0.97

8 8 6.7e-05 0.0061 17.9 1.5 1 22 658 679 658 679 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	4.7e-06	0.00043	21.5	1.1	1	23	460	482	460	482	0.99
2	8	2.8e-06	0.00026	22.3	1.7	1	23	488	510	488	510	0.98
3	8	8.5e-06	0.00078	20.7	0.6	2	23	519	540	519	540	0.98
4	8	1.1e-05	0.00097	20.4	0.6	1	23	546	568	546	568	0.99
5	8	1e-07	9.2e-06	26.8	2.1	1	23	574	596	574	596	0.98
6	8	6e-07	5.5e-05	24.4	1.3	1	23	602	624	602	624	0.97
7	8	0.00011	0.0097	17.3	7.2	1	23	630	652	630	652	0.97
8	8	6.7e-05	0.0061	17.9	1.5	1	22	658	679	658	679	0.95

Sequence Information

Coding Sequence: ATGTGTGAATGGCTATCAAATAGCGAGTGGTGCGATGTGAAGCTAGTGTGTGGCGGGCGAACTTTTAACGCACATCGCGCAGTGTTGGCGAGTGTTAGCATCTTTCTCAGGCGGGTCCTACTTTCATGTCCACAAGAAGACACACCCGTATTTATAGTCTTACCAGACTTCGATCTCGAAGCGATGTCATCTGTTCTTTATTATGTGTACAATGGAGAAGTATTCATAGACAATCAtaagttatttttgtttcttgATATAATAAAATCGTTAGAAATCTTcattgatcaccagtttttagaGAAATTACAGGAAACTACAGAAGACAGACATTTAGAtcattttaaaaagaaacaaagaaaatccCTATATGCTTTGTTTAATATGGACTCACAGAATAAACGTGAAAGTTTGGATATAGAAAAATACGACGGAGTGCAAGATAAAAATCTTCAGTATTTGCTTGGTAATTCAGATCTCTGTGATAAGAGAGATATATGTCTGAAACGGAGTGAGCTGCATCCTTCACAGCCATACTTGGACCGACAAAGGAACTCTTTCCTACGTGATTTATATATCGAGACATATCCTCAAAACGGTAATGTTAACGGTGTTACGGGAGGCGTGCTAGCAATATCAAATGAACCCTATCGTGTACCGACATCTGTTCTCTTAACGAATGCAAATGGTAAACATCCCATCAGAGCTGACGACAGGCTCTCAGCTACAAGAAATTCAACAGAAAGTGAATTACCTAACATATCTCGCAAACAATATTGCGTGAATGGATTTGATCAACCGTACAATGAAATTTATACTCAGAAACTTCTTGACACTGCCCAAAGAACGGCTCTAAATATGTCAAAAAGCAATCAATCGAGAGTTAATAGTGATTATGACTTGATgttcaattataataaaactgtgatAAGTTATAAGCCTTCATATACTCAACCTCATAAAGAAACAATGGAAGAGAAGAGTTCCGTAGCCACTTTAGACCTCAGTCTCACAGAGTCTTTAGTTAGAACAGTACTATCTGGTCCCTCTGAAAATGCAAACAAGTGTATAGATGCAATACGTATAATGCAAAGTAGGATGAataatattaatagaaaatttcaAATAGAGAAGAAGGATAATTTAAGCAATCTCTCTAAGGTACCAATTTTTAATCGAGTAATAGATAGCCCATGGCGTCCACGggtacctaataattacaaaCCATTAAGAAGAAAAGGCACCCATGTTACTGCCACTGTGCCAACCAAAAAGgaaaCGTGTTCGGTGATCAATgatagcaataataataatttagaagaAACAGTGACAACACCAAATCTATGCGTGGAAGAAACTTCTGCTAACGGGGTAGAATATAAATGTTCGATTTGTAGCCAGgtgttcACAAACGAAGATAGCCTCTCGTCTCACCTGAAACGGCATACAACCACAGCCCGCTACACCTGCAGCGAATGTGGCAAGACGTTTTCGCAGCTGCGCAACTTCAAGTACCACGTGTCGGTACACCGAGGTACCAGGGAGTTCGCTGCCACTTGCACCGTCTGTGGGAAGTACTTTAATGACAGAGGGTACCTCAGCAGCCACATGAAGATACATAGaaaTCGAAAAGAATACAAGTGCTCTTTATGTCCAAAATCTTTCAACCAACGGGTCGCCTACAACATGCACGTCAGGATACACACAGGGGTAAAACCTCACGTGTGCGAGGAGTGCGGAAAGGCGTTTTCTCGTAAAATGCTGTTGAAGCAGCACCAGCGCACGCATTCCGGTGAGAGGCCGTACGCCTGCCCGCATTGCGATAAACGGTTCGCGGACCGATCCAACATGACCCTGCACCTTCGATTACATACTGGAGTGAAGCCTTTCTCCTGCTCGTTGTGTCCAAAATCCTTCACCAAGAAGCACCACCTGAAATCGCACCTGAACTTCCACACGGGCGCCAAGCCGTACTCGTGCCCGCGCTGCCACCTCGCCTTTACGCAGTCCTCCAACATGCGGACGCATCTCAAGAAATGTACTGCTTCGCCTGAAGTTGGTGTATCGAGCAAGTGA
Protein Sequence: MCEWLSNSEWCDVKLVCGGRTFNAHRAVLASVSIFLRRVLLSCPQEDTPVFIVLPDFDLEAMSSVLYYVYNGEVFIDNHKLFLFLDIIKSLEIFIDHQFLEKLQETTEDRHLDHFKKKQRKSLYALFNMDSQNKRESLDIEKYDGVQDKNLQYLLGNSDLCDKRDICLKRSELHPSQPYLDRQRNSFLRDLYIETYPQNGNVNGVTGGVLAISNEPYRVPTSVLLTNANGKHPIRADDRLSATRNSTESELPNISRKQYCVNGFDQPYNEIYTQKLLDTAQRTALNMSKSNQSRVNSDYDLMFNYNKTVISYKPSYTQPHKETMEEKSSVATLDLSLTESLVRTVLSGPSENANKCIDAIRIMQSRMNNINRKFQIEKKDNLSNLSKVPIFNRVIDSPWRPRVPNNYKPLRRKGTHVTATVPTKKETCSVINDSNNNNLEETVTTPNLCVEETSANGVEYKCSICSQVFTNEDSLSSHLKRHTTTARYTCSECGKTFSQLRNFKYHVSVHRGTREFAATCTVCGKYFNDRGYLSSHMKIHRNRKEYKCSLCPKSFNQRVAYNMHVRIHTGVKPHVCEECGKAFSRKMLLKQHQRTHSGERPYACPHCDKRFADRSNMTLHLRLHTGVKPFSCSLCPKSFTKKHHLKSHLNFHTGAKPYSCPRCHLAFTQSSNMRTHLKKCTASPEVGVSSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00035031;
90% Identity: iTF_00035031;
80% Identity: iTF_00035893;