Basic Information

Insect: Agriphila straminella
Gene Symbol: -
Assembly: GCA_950108535.1
Location: OX467328.1:6674700-6682312[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 0.032 2.9 9.5 0.4 1 23 60 83 60 83 0.94

2 28 0.016 1.5 10.4 1.0 1 23 111 134 111 134 0.91

3 28 0.11 9.7 7.8 1.4 1 23 155 177 155 177 0.96

4 28 0.00067 0.062 14.8 0.2 1 23 181 203 181 203 0.97

5 28 0.076 7 8.3 0.2 1 23 208 231 208 231 0.85

6 28 0.012 1.1 10.8 0.5 2 23 238 260 238 260 0.90

7 28 5.9 5.4e+02 2.3 9.3 1 20 266 285 266 288 0.95

8 28 5.5e-05 0.005 18.2 4.6 1 23 294 316 294 316 0.98

9 28 0.00084 0.077 14.5 4.3 3 23 324 344 322 345 0.95

10 28 0.013 1.2 10.7 1.1 1 23 417 440 417 440 0.93

11 28 0.027 2.5 9.7 0.7 1 22 468 489 468 491 0.90

12 28 0.55 50 5.6 2.9 1 23 512 534 512 534 0.96

13 28 0.002 0.18 13.3 0.1 1 23 538 560 538 560 0.96

14 28 0.026 2.4 9.7 0.2 1 23 565 588 565 588 0.93

15 28 0.007 0.64 11.6 0.8 2 23 595 617 594 617 0.91

16 28 0.00057 0.053 15.0 1.0 1 23 624 647 624 647 0.98

17 28 1 93 4.8 5.5 1 23 653 675 653 675 0.98

18 28 0.085 7.8 8.1 0.6 1 22 849 870 849 872 0.90

19 28 0.022 2.1 10.0 3.6 1 23 893 916 893 916 0.98

20 28 0.0041 0.38 12.3 0.2 1 23 921 943 921 943 0.96

21 28 0.0065 0.6 11.7 0.7 1 23 948 971 948 971 0.91

22 28 0.0034 0.31 12.5 0.8 1 23 977 1000 977 1000 0.91

23 28 0.021 1.9 10.1 2.2 1 23 1007 1030 1007 1030 0.96

24 28 0.011 0.99 11.0 1.2 1 23 1204 1226 1204 1226 0.97

25 28 0.0002 0.018 16.4 1.4 1 23 1230 1252 1230 1252 0.98

26 28 0.15 14 7.4 0.4 1 23 1257 1280 1257 1280 0.84

27 28 0.089 8.1 8.1 1.7 1 23 1286 1309 1286 1309 0.91

28 28 0.028 2.6 9.7 1.7 1 23 1316 1338 1316 1338 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	0.032	2.9	9.5	0.4	1	23	60	83	60	83	0.94
2	28	0.016	1.5	10.4	1.0	1	23	111	134	111	134	0.91
3	28	0.11	9.7	7.8	1.4	1	23	155	177	155	177	0.96
4	28	0.00067	0.062	14.8	0.2	1	23	181	203	181	203	0.97
5	28	0.076	7	8.3	0.2	1	23	208	231	208	231	0.85
6	28	0.012	1.1	10.8	0.5	2	23	238	260	238	260	0.90
7	28	5.9	5.4e+02	2.3	9.3	1	20	266	285	266	288	0.95
8	28	5.5e-05	0.005	18.2	4.6	1	23	294	316	294	316	0.98
9	28	0.00084	0.077	14.5	4.3	3	23	324	344	322	345	0.95
10	28	0.013	1.2	10.7	1.1	1	23	417	440	417	440	0.93
11	28	0.027	2.5	9.7	0.7	1	22	468	489	468	491	0.90
12	28	0.55	50	5.6	2.9	1	23	512	534	512	534	0.96
13	28	0.002	0.18	13.3	0.1	1	23	538	560	538	560	0.96
14	28	0.026	2.4	9.7	0.2	1	23	565	588	565	588	0.93
15	28	0.007	0.64	11.6	0.8	2	23	595	617	594	617	0.91
16	28	0.00057	0.053	15.0	1.0	1	23	624	647	624	647	0.98
17	28	1	93	4.8	5.5	1	23	653	675	653	675	0.98
18	28	0.085	7.8	8.1	0.6	1	22	849	870	849	872	0.90
19	28	0.022	2.1	10.0	3.6	1	23	893	916	893	916	0.98
20	28	0.0041	0.38	12.3	0.2	1	23	921	943	921	943	0.96
21	28	0.0065	0.6	11.7	0.7	1	23	948	971	948	971	0.91
22	28	0.0034	0.31	12.5	0.8	1	23	977	1000	977	1000	0.91
23	28	0.021	1.9	10.1	2.2	1	23	1007	1030	1007	1030	0.96
24	28	0.011	0.99	11.0	1.2	1	23	1204	1226	1204	1226	0.97
25	28	0.0002	0.018	16.4	1.4	1	23	1230	1252	1230	1252	0.98
26	28	0.15	14	7.4	0.4	1	23	1257	1280	1257	1280	0.84
27	28	0.089	8.1	8.1	1.7	1	23	1286	1309	1286	1309	0.91
28	28	0.028	2.6	9.7	1.7	1	23	1316	1338	1316	1338	0.98

Sequence Information

Coding Sequence: ATGACGCTGCGTGACGACGTGCAACCTTGTATTCCGTTACTTCCGATCCCAATCAAAAGAAACGGTGAATCATCCTCAGGCATTCTAAACAATTTGGAGAAAAAGCAAATGATGAGAATCAGTGCTATCTCCATAATATTGAATATGAACGTATGCCCATTTCAATTCAAACGACTATTCATATGTCTCTTCTGTAAACTCCAATTCGCCACCATGTCTGAACTTCAACAGCACAACAACATAGAACATAATGATTTAGACGAGTACACTGTTAGAAAAGCCATGGTCAGGATCGGAAGAATAGAACCTGTCAAAATTAACATGTCAGATTTTACGTGCAGACTCTGCAATCAAGAATTGTCTAATTTCGAGAACTTAAAAAAACATCTTGTTGGAAAACATAAGAAAGTTATAGACTTGAAAAATGATGGTGTTGTGCCGTTCAGGGTGACAGAAAATACTTACACGTGCGCTAGGTGCGATGTGATGTGTGAAAATTATCGTCAGCTTGCGAAACACACGAGCGGGCATTATAGTGATTATATTTGCGACCAGTGCGGCAGTGGATTTACTAGTGCAAAACTTCTTAAAATTCATTATATTTCTCACAAGCATGGCTCTTACCCATGTGAAGAGTGCGGGAAGGAATACAGAACAATTCTGGCTAAGCAGgaacattttaaaatcattcATTTGAACGCTAAAATGAACAGATGTACTCTCTGTCCAGAAACCTTTAGAGACTACTATCAGAAACAGAAGCATCTTGTAGAAGCGCATGGTAAAGGACAAAAGTACTCATGTTCTCATTGCAACTACTATTCGTGTCACAAGAATGCATTGAAGCTACATATGATTTGTCATAGTGACGAGAAGAACCATAAGTGTCAGGTTTGCAAGAAGAGTTATGCACGAAGAAAAACTTTAACGGAACATATGAAAAGTCATAATAATGACAGGAGATTTGGTTGCCAGTATTGCGATCGGGCATTCGTACAGAAATGCAGTTTAAAAGGCCATCTGAAGACACACCACAGAAATGTCCAGAACTTAGAGTGTGTCATGTCGCTGCGTGCTGACGTGCAACCTAGTATTCCGTTACTGGACAATCTGGACATCACAATCAAAAGAATCGGTGAATCATCCTCAATCACTCTAAAGAATTTGGAGAATAATCAAATGATGAGAGTCAGTGCTATCTCCATAATAGTGAATATGAACGTCTGTCCATTTCAATTCAATCGACTATTCACATGTTTCTACTGTAGACTCCAATTCGCCACCATGTCTGAACTTCAACAGCACAACAACTTAGAACATAATGATATAGACGAGTACATTGTTCGAAGAGCTATGGTCAGGATTGGAAGAATACAACCTGTCAAAATTAACATATCAGATTTCACGTGCAGACTCTGCAATCAAGAATTGTCTAATTTCGAGAACTTAAAAAACCACCTTGTTGGAAAACATAGGAAAGTTATAGACTTGAAAAATGATGGTGTTGTGCCTTTCAGGGTGACGGACAATACTTACACGTGCGCTAGATGCGATGTGATTTGCGAAAATTATCGTCAGCTGGCGAAACACACGCACGAGCATTATAGTGATTATATTTGCGACCAGTGTGGCAGTGGATTTACTACTGCAAACCTTCTTAAAGTTCATTCTCTTTCTCACCAGCATGGATCCTACCCATGTGAAGAGTGCGGGAAGGAATACCGAACAATTCTGAGTAAGCAGGAACATTTTAGAATCGTTCATATGAACACTAAAAAGAACAAATGTACTCTATGTCCAGAAAGCTTTAGAAACTACTATCAGAAACAGAAGCATCTTGTAGAAGTGCATGGTAAAGAAAAGTACACTTTCAAATGTGGAGTTTGTACTAAGTTCTTCTTAACAAATTCTAATATGAGAGCTCATGAGCGGACGGCACATGTTAAAGGACAAAAGTACTCATGTGCTCATTGCAACTATGATTCGCATCACAAGAATGCATTGAGGCTACATTTGATTCGTCATAGTGACGAGAAGAACCACAAGTGTCAGGAGAATTTTTTGCCAGTATTGCGGGGCATTCGTAGAGAAATGGAATTTACAAGATCATCTAAAGACCCACCTCAAAATCAGAAAATTAAATGTCCAGAACTTAGAGTGCTaggtGACACGACTATTCAGCGTTGTACACCAATTCATCCTGTTGGTATTGTTGCTACATCACGTGACGGTGTGCAATCTAGCATTCCGATACCCCCGAAAGATACTGAAGAAACCGACGAATCACCCATAAACATTCTAAAGTATTTGGAGAAAAATCAAACAATGAGAATCAGCGCTATCTCCATAATAATGAATATGAACGTCTTCCCGTTCCAATTCAAACAATTATTCACGTGTCTCTACTGTAGAGACCGATTCCTCACCATGCCTGAACTACAACAGCACAATAACATTAATCATAACGAGGTAGACGAGTACACCGTTAGAAAAGCAATCATCACTATAGGAGGAATACAACCcgtcaaaattaacataatagatTTCACGTGCAGACTCTGCAATCAAGAATTGTCTAATTTTGAAGACTTAAAAACCCATCTTGTTGGTAAACATAAGAAAGTTATACATTTGAAAAATGATGGTGTTATGCCGTTCAGGGTGACGGAAAATACTTATACGTGCGCTCGATGCGATGTGGTCTGTGAATATTATCATGAACTGTTTAAACACATGAAAGTAAATCACTTTAATAGTGATTATATTTGCGACCAGTGTGGTAGTGGATTCACTAATGCAAAACGCCTTAAAGCCCATTCTTTGATTCATGAGCATGGCTCGTACCAATGTGAAGTGTGCGGGAAGGTGTACCGAACAATTATGTCTAAGCAGTCACATTTTAAACTCGTTCATTTGAACCATAAAAAGTACAGATGTACTTTTTGTCCAGAAGCCTTTAAAAATTTGTATCAGAAACAGAAGCATCTTGTAGAAGTGCATGATGAAGGAAAGAGTACTTACAAATGCGGTTTTTGTACTAAAACCTTCTTTTTCACGAATCAAATGAAAGCTCATGAGCGGTTAGCACATGTTAAAGgTGACACGACCATTCGGCGTTTTACACCAATTCGTCCTGTTGGAATTGTTGCGACGCCGTGTGACGACGTGCAACCTAGCATTCCGATACGTTCAATCGATATTGAAGAAATCGATGAATCACCCTTAAGCATTCTAAAGGATTTGGATAAAAAGCAAATTATGAGAGTCAGCGCTATCTCCTTAATAGTGAATATGAACGTCTGCCCATTCCAATTCAATCGATTATTTATGTGTCTCTACTGTAAAGACAAATTCCTTACCATGCCTGAACTACAACAGCACAATAACATTGAGCACAGTGATATAGACGAGTGCACCGTTAAAAAAGCAATTATCAGGATCGGAGGAATACAACCCGTCAAAATTAACATATTAAATTTCTCGTGCAGACTTTGCTATCAggaattattaaattttgaggACTTAAAAAACCATCTTGTTGGAAAACATAAGAAAGTTATAGATTTGGAAAATGATGGTGTTATGCCGTTCTGGGTGACGGAAAATACTTACATGTGCGCTCGATGCGATGTGATGTGTGAAAATTATCGTCAGCTGGCGAAACACATGAATGAGCATTATAGTGATTATGTTTGCGACCAGTGTGGTAGTGGATTTACTACTGAAAAACATCTTAAAATTCATTATCTTTCTCACCAGCATGGCTCCCACCCATGTGAATTGTGCGGAAAGGTGTACCGAACAGTTCTGGCTAAGCAGGAACATTTTAAAATCGTTCATTTGAAAGCTAAAAAGCACAGATGTACTCTATGTCCAGGAACCTTTAAAGATTACTATCAGAAACAGAAGCATCTTGTAGAAGCGCATGGCAAAGAAAAGTTCACTTACAAATGCGGATTTTGTACTAAGATTTTCTTGACCAGTTCTAATAAGAGAGCTCATGAGCGGTTACATGTTAAaggtaataagtag
Protein Sequence: MTLRDDVQPCIPLLPIPIKRNGESSSGILNNLEKKQMMRISAISIILNMNVCPFQFKRLFICLFCKLQFATMSELQQHNNIEHNDLDEYTVRKAMVRIGRIEPVKINMSDFTCRLCNQELSNFENLKKHLVGKHKKVIDLKNDGVVPFRVTENTYTCARCDVMCENYRQLAKHTSGHYSDYICDQCGSGFTSAKLLKIHYISHKHGSYPCEECGKEYRTILAKQEHFKIIHLNAKMNRCTLCPETFRDYYQKQKHLVEAHGKGQKYSCSHCNYYSCHKNALKLHMICHSDEKNHKCQVCKKSYARRKTLTEHMKSHNNDRRFGCQYCDRAFVQKCSLKGHLKTHHRNVQNLECVMSLRADVQPSIPLLDNLDITIKRIGESSSITLKNLENNQMMRVSAISIIVNMNVCPFQFNRLFTCFYCRLQFATMSELQQHNNLEHNDIDEYIVRRAMVRIGRIQPVKINISDFTCRLCNQELSNFENLKNHLVGKHRKVIDLKNDGVVPFRVTDNTYTCARCDVICENYRQLAKHTHEHYSDYICDQCGSGFTTANLLKVHSLSHQHGSYPCEECGKEYRTILSKQEHFRIVHMNTKKNKCTLCPESFRNYYQKQKHLVEVHGKEKYTFKCGVCTKFFLTNSNMRAHERTAHVKGQKYSCAHCNYDSHHKNALRLHLIRHSDEKNHKCQENFLPVLRGIRREMEFTRSSKDPPQNQKIKCPELRVLGDTTIQRCTPIHPVGIVATSRDGVQSSIPIPPKDTEETDESPINILKYLEKNQTMRISAISIIMNMNVFPFQFKQLFTCLYCRDRFLTMPELQQHNNINHNEVDEYTVRKAIITIGGIQPVKINIIDFTCRLCNQELSNFEDLKTHLVGKHKKVIHLKNDGVMPFRVTENTYTCARCDVVCEYYHELFKHMKVNHFNSDYICDQCGSGFTNAKRLKAHSLIHEHGSYQCEVCGKVYRTIMSKQSHFKLVHLNHKKYRCTFCPEAFKNLYQKQKHLVEVHDEGKSTYKCGFCTKTFFFTNQMKAHERLAHVKGDTTIRRFTPIRPVGIVATPCDDVQPSIPIRSIDIEEIDESPLSILKDLDKKQIMRVSAISLIVNMNVCPFQFNRLFMCLYCKDKFLTMPELQQHNNIEHSDIDECTVKKAIIRIGGIQPVKINILNFSCRLCYQELLNFEDLKNHLVGKHKKVIDLENDGVMPFWVTENTYMCARCDVMCENYRQLAKHMNEHYSDYVCDQCGSGFTTEKHLKIHYLSHQHGSHPCELCGKVYRTVLAKQEHFKIVHLKAKKHRCTLCPGTFKDYYQKQKHLVEAHGKEKFTYKCGFCTKIFLTSSNKRAHERLHVKGNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -