Astr030933.1
Basic Information
- Insect
- Agriphila straminella
- Gene Symbol
- -
- Assembly
- GCA_950108535.1
- Location
- OX467327.1:1129248-1144198[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0042 0.39 12.3 4.1 1 23 326 349 326 350 0.96 2 22 0.0028 0.25 12.8 0.6 1 23 356 378 356 378 0.98 3 22 0.00043 0.039 15.4 5.7 1 23 409 431 409 432 0.96 4 22 0.012 1.1 10.8 0.9 3 23 439 460 439 460 0.97 5 22 6.9 6.3e+02 2.1 0.1 1 19 467 485 467 487 0.91 6 22 2 1.8e+02 3.8 0.6 3 22 495 514 494 516 0.82 7 22 0.08 7.4 8.2 0.2 2 19 542 559 542 560 0.97 8 22 0.96 88 4.8 0.1 3 23 573 593 572 594 0.90 9 22 0.00045 0.042 15.3 0.7 3 23 601 622 600 622 0.97 10 22 0.00073 0.067 14.7 3.1 3 23 673 693 672 693 0.98 11 22 0.14 13 7.5 0.1 1 17 699 715 699 716 0.88 12 22 0.032 3 9.5 0.2 1 17 737 753 737 754 0.88 13 22 0.032 3 9.5 0.2 1 17 774 790 774 791 0.88 14 22 0.025 2.3 9.8 0.4 1 18 811 828 811 828 0.90 15 22 0.032 3 9.5 0.2 1 17 859 875 859 876 0.88 16 22 0.032 3 9.5 0.2 1 17 897 913 897 914 0.88 17 22 0.032 3 9.5 0.2 1 17 935 951 935 952 0.88 18 22 0.032 3 9.5 0.2 1 17 973 989 973 990 0.88 19 22 0.032 3 9.5 0.2 1 17 1011 1027 1011 1028 0.88 20 22 0.0032 0.29 12.6 0.2 1 23 1049 1071 1049 1071 0.97 21 22 2.5e-06 0.00023 22.4 1.2 1 23 1077 1099 1077 1099 0.97 22 22 0.0016 0.15 13.6 1.3 1 23 1105 1128 1105 1128 0.96
Sequence Information
- Coding Sequence
- ATGCATATATTGAAACAAGGAAGGGTTTGCCATAATCATTTTGAAAGCAAATACCACACCTGGACTAATACTCTTTCACCTAATGCTGTACCGACCTTATGTTTACaaaAGCCCTCAGCGTCGAAGTCCACACCACAACCACCGCACCCGACGCCGCCTGGTTCCCCCGCTGCTGAAACGTATGAAGTAGACACTGATCCTTTAGAAGAAGCAATTGAAGAAGAAGACAATTATGTATTCGATAACGAAGATGATATGTTCTTGGTCAAGTCAGattCGAAAATGTCTGGTCGTGTTTTACAACCACAGAAATTGGTTTGGGTTGAAACCAAAGGTGTGTCTGGAAAAGTGCGTGCGTGTCGGGCGTGCCTCGCTACTAATATGCGGCTATTCGAACTCAAAGACAACATAAAATCTATTTACGAAGAATTCGTTGGGAGCGAGGTGTCGGGCTTGGACAATCTGCCCAAGTATCTCTGCACTTACTGCATGGTGCTTATCAGGAAATTCAAGAATTTCAAGGAGAAATGCTTGCGCTCGCAGGAGTTACTTCACAACATCGACAGCATCAAAATGTTGAACACAAAATTCATCAAATCTGTCGACCGGCCATTCTACAATCTCCATAACAACTTATCCATATCGAGCCCCATATTCATGGAAACCGATTACATTAAAGAAGAAATAGACTTACTAGGCGAAGAACCGGTCGTAGTGAAACAAGAAACCAAAAAAACTTTAGAAGTTAAAGTTGAAGATATAAACATGGAGGAAGTACTTGATTACGTGATGGATGACGAGCATTATCTCGAAGAGAGCGAAGGGGAGGTGGAAGCGGAACCGAAGcagaaaaacttttttgacCGGGAAGCTTACGAGATAGAATATAATATGGATATAATATTGCTTACTGAAGAGGAACAGATGATGGAAATCGAAGCACGGAAACAATCTCAGAATTTTCTGAAGTCACACTTTAGGTGTGAGGATTGCGGTAAAGGATTTAATTCAAATGAAACGCACACTACCCACTATAACACTATACATCATCCAGATTTAGGACAATTTGAATGTCCGCTTTGCAAGTCAAGATTTTCGAGCAAAATTCGAATGAATGCTCATATAAACAGCCacaaatatagGTACAACTGTCGCGAATGTGAATTTACAACCATGCGAAGAATGTCCGCTAGCAAGCATAGAGATTACCACTTGGGTGTTCTATACACTTGCAACATTTGCCAAAAAGATTTCACCAAACACACGTCACTATTATCACACACACGAATCCATCACCCCGCACAAGGTGTCTGGTGTAGATATTGCGGAGAATCTTTCATAAGTGACATGGGTTTAAAAACCCATAAGAGACTCAAACACGCTAACATGATAACCGAGTATATATGCCAAACGTGCAGTGCAACTTTTTTATATGAAGACGCTTTAACTGTTCACAATTCAGGGCTTTGTGCACCTAACCCGTGTGCTTTCTGCGGTTATTCTTATTCCAGCGATAAGTTGTTGCAATGTCATGTGCTTGAAGATCATAGAGGGAAAGTCGTTAAGAGCGTTAGACCTCCGTCTCAAGGAACGGTTAAAAAACTGAAACGGAAGGATTTTAGGAAATGTGAGCTTTGCGATAATATATTTAATAGTGAAACTGCGTTGCAAAGACATAGTGGGTTAATGGAGGGGGCTTGTGGAGGGATGAGGGCCTGTGTGGAGTGCGGGGAGAGCTTCTTGACGGGGGAGATGTTGAAGGAACATGTTATCGATCACCATTCTGAAGTCGAGATGCTGTGTCCCAGGTGCAACAGAACATTCGAGACCGAGTCAGAATTCAACGAGCACTACAAACGTGTTCATATGAAGAAAGGTCCTCCCCGTTTAGTGGGGACCAAAACATGGGGGGTGACTGTGTTAAATGATGGACCCGTGATAGCAGAGAAAGCCGGACCCGGGGTAAAAGTGGAGCCGGAGCGGATCAAACCTAAATCTAAAGCGACTCCGTCCTTCTGTGAAATCTGTGGGAAGCAGTGTGCAAGTAGCATCCACCTGACGTACCACCTGCGCATGCACACGGGGGAGAAACCGTACAAGTGCGCCATCTGCCAGAAGGCCTTCGCCGTGCCCAAGTTCTTGAAGGTCAGTATTACTGGGATTGTCTGTGGTTATTATGTTGTCTATGTTACAGAGGGGGAGAAACCGTACAAGTGCAACATCTGCCAGAAGGCCTTCGCCGTGCCCAAGTTCTTGAAGGTCAGTATTACTGGGATTGTCTGTGGTTATGTTGTCTATGTAACAGAGGGGGAGAAACTGTACAAGTGCAACATCTGCCAGAAGGCCTTCGCCGTGCCTAAGTTCTTGAAGGTCAGTATTACTGGGATTGTCTGTGGTTATGTTGTCTATGTAACAGAGGGGGAGAAACTGTACAAGTGCAACATCTGCCAGAAGGCCTTCGCCGTGCCTAAGTTCTTGAAGAAGGCCTTCGCCGTGCCCAAGTTCTTGAAGGTCAGTATTACTGGGATTGTCTGTGGTTATTATATTGTCTATGTAACAGAGGGGGAGAAACCGTACAAGTGCAACATCTGCCAGAAGGCCTTCGCCGTGCCTAAGTTCTTGAAGGTCAGTATTACTGGGATTGTCTGTGGTTATTATATTGTCTATGTAACAGAGGGGGAGAAACCGTACAAGTGCAACATCTGCCAGAAGGCCTTCGCCGTGCCTAAGTTCTTGAAGGTCAGTATTACTGGGATTGTCTGTGGTTATTATGTTGTCTATGTAACAGAGAGGGAGAAACCGTACAAGTGCAACATCTGCCAGAAGGCCTTCGCCGTGCCTAAGTTCCTGAAGGTCAGTAATACTGGGATTGTCTGTGGTTATTATATTGTCTATGTAACAGAGGGGGAGAAACCGTACAAGTGCAACATCTGCCAGAAGGCCTTCGCCGTGCCTAAGTTCTTGAAGGTCAGTATTACTGGGATTGTCTGTGGTTATTATATTGTCTATGTAACAGAGGGGGAGAAACCGTACAAGTGCAACATCTGCCAGAAGGCCTTCGCCGTGCCCAAGTTCTTGAAGGTCAGTATTACTGGGATTGTCTGTGGTTATTATATTGTCTATGTAACAGAGGGGGAGAAACCGTACAAGTGCAACATCTGCCAGAAGGCCTTCGCCGTGCCCAATATCTTGAAGGAGCATTTCAAAGTGCACACTGGAGAACGGCCGTACGACTGCGATTACTGCACGAAGGCTTTCAAGTCTAAATCTGCCCTCAACAGACACAAGTTGATACACACCGGCGAGCGTCGTCACATCTGCTCGATTTGCAACAAAGATTTCCTCACCTCATCAGACGTTAAGACCCACATCAAGACCGTACACATgaagatcgtcggtccaccacGCATCAGGAAGCCGAAGATCGACAGGGAACTTCAAATCCAAGATGTGCAGATACAGTACATTAATGAATga
- Protein Sequence
- MHILKQGRVCHNHFESKYHTWTNTLSPNAVPTLCLQKPSASKSTPQPPHPTPPGSPAAETYEVDTDPLEEAIEEEDNYVFDNEDDMFLVKSDSKMSGRVLQPQKLVWVETKGVSGKVRACRACLATNMRLFELKDNIKSIYEEFVGSEVSGLDNLPKYLCTYCMVLIRKFKNFKEKCLRSQELLHNIDSIKMLNTKFIKSVDRPFYNLHNNLSISSPIFMETDYIKEEIDLLGEEPVVVKQETKKTLEVKVEDINMEEVLDYVMDDEHYLEESEGEVEAEPKQKNFFDREAYEIEYNMDIILLTEEEQMMEIEARKQSQNFLKSHFRCEDCGKGFNSNETHTTHYNTIHHPDLGQFECPLCKSRFSSKIRMNAHINSHKYRYNCRECEFTTMRRMSASKHRDYHLGVLYTCNICQKDFTKHTSLLSHTRIHHPAQGVWCRYCGESFISDMGLKTHKRLKHANMITEYICQTCSATFLYEDALTVHNSGLCAPNPCAFCGYSYSSDKLLQCHVLEDHRGKVVKSVRPPSQGTVKKLKRKDFRKCELCDNIFNSETALQRHSGLMEGACGGMRACVECGESFLTGEMLKEHVIDHHSEVEMLCPRCNRTFETESEFNEHYKRVHMKKGPPRLVGTKTWGVTVLNDGPVIAEKAGPGVKVEPERIKPKSKATPSFCEICGKQCASSIHLTYHLRMHTGEKPYKCAICQKAFAVPKFLKVSITGIVCGYYVVYVTEGEKPYKCNICQKAFAVPKFLKVSITGIVCGYVVYVTEGEKLYKCNICQKAFAVPKFLKVSITGIVCGYVVYVTEGEKLYKCNICQKAFAVPKFLKKAFAVPKFLKVSITGIVCGYYIVYVTEGEKPYKCNICQKAFAVPKFLKVSITGIVCGYYIVYVTEGEKPYKCNICQKAFAVPKFLKVSITGIVCGYYVVYVTEREKPYKCNICQKAFAVPKFLKVSNTGIVCGYYIVYVTEGEKPYKCNICQKAFAVPKFLKVSITGIVCGYYIVYVTEGEKPYKCNICQKAFAVPKFLKVSITGIVCGYYIVYVTEGEKPYKCNICQKAFAVPNILKEHFKVHTGERPYDCDYCTKAFKSKSALNRHKLIHTGERRHICSICNKDFLTSSDVKTHIKTVHMKIVGPPRIRKPKIDRELQIQDVQIQYINE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -