Astr032462.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Agriphila straminella
Gene Symbol
-
Assembly
GCA_950108535.1
Location
OX467328.1:6689374-6696026[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.27 25 6.6 0.2 1 23 76 98 76 98 0.92
2 21 0.003 0.28 12.7 1.4 1 23 102 124 102 124 0.98
3 21 0.47 43 5.8 0.2 1 23 265 288 265 288 0.96
4 21 0.033 3 9.5 0.8 2 23 314 335 313 335 0.96
5 21 0.03 2.7 9.6 0.3 1 23 357 379 357 379 0.98
6 21 7.3e-05 0.0067 17.8 1.4 1 23 383 405 383 405 0.99
7 21 0.00022 0.02 16.3 0.3 1 23 410 433 410 433 0.95
8 21 8.9e-05 0.0082 17.5 0.5 2 23 440 462 440 462 0.97
9 21 7.1e-05 0.0065 17.8 1.3 1 23 469 492 469 492 0.98
10 21 0.00098 0.09 14.2 1.1 2 23 499 520 498 520 0.96
11 21 0.011 1 10.9 0.8 1 23 643 666 643 666 0.96
12 21 0.13 11 7.6 1.2 1 23 737 759 737 759 0.97
13 21 4.2 3.8e+02 2.8 0.4 1 23 763 785 763 785 0.77
14 21 0.0002 0.018 16.4 1.4 1 23 790 813 790 813 0.96
15 21 0.0073 0.67 11.5 0.3 2 23 820 842 820 842 0.94
16 21 0.47 43 5.8 0.2 1 23 989 1012 989 1012 0.96
17 21 0.05 4.6 8.9 0.5 2 23 1038 1059 1037 1059 0.96
18 21 0.03 2.7 9.6 0.3 1 23 1081 1103 1081 1103 0.98
19 21 0.0061 0.56 11.7 1.3 1 23 1107 1129 1107 1129 0.98
20 21 0.00022 0.02 16.3 0.3 1 23 1134 1157 1134 1157 0.95
21 21 6.6e-05 0.006 17.9 0.5 2 23 1164 1186 1164 1186 0.97

Sequence Information

Coding Sequence
ATGAATGAATCTCACACATTTGCCCCGTTAAAGGGGTTGGTGAACAACAGAAGAGAGAATATTCTGAAAGTAGAAGTAAGCgatttaacttttaaaatatgttATAAGAAGCAAAACAGCTTGATAGATATGAAATTACATCTCAAGTTCGACCACCAGAAACCGATAGACCCAGAATTGAAAGATAACCTCATACCTTTTAAGTTGATTCCATCTGTAAGTGGCTATAAATGTGTTATTTGTGATCAGCATTTTGATGAAGTCCGAATTTTGGTTATACACATGAGCGTACACTTGAGCAACTACAAATGCGAAAGTTGTGGATCTGAATTCATGACTTTACATCTATTGAAAAAGCATCTGGACGTTCACGAAAGTGGCATACTACAACCCAGCGATTCTACTCTCAAAATAAAAGCTGAAGATGGACATGAGATCGTGTTGACTGTGCTCAAACGACCGATACCTCTAGATGATCTCAGCCGAGTGATTGAGGCTGACAGTAAAAAGAAGCATAAACGACAGAAACTTAAAGCTGAGAAActaaacttaaaacttaaaaacaacTACGCTAACGTCGATTTTCTTAAAGAACCTATATCCCTTAAAGATTGGAATAAAGATTCTGAGAAAAAAGAAGTAACGTTTAAAGTGAAAACTATTCAAGGCCCCTTTTTCACAGCTGCTTCTAAGAAAAGGGAGAATTCTTTGAAGTTACACGCGTGGAAAGAAAATGCTTTgagcatttttgaaaattcataCGTTTATCCGTTCATACACTCTGGCAACAGATACAAATGCTTCGTTTGCTCTGATCTGTTTGTAGATGCAAATACATTGAAAGATCACACTGTGACTGGGCATTCTTTCAAAGATTTGAAAAGGGAATTGTACAATAGAGTCAAAGATACTAACATAAAAGTAGATATAAGTAATTTGCAATGCAAGTTATGCTACATCAATTTGTCAAATTTTGACTCTTTGAAAACACATATCAAAGACCATGGCAAGAATATAGACTTGAGTATACAAGATAACTTAATACCTTTTAAATTGGGTAAAGATTCCTTTGAATGTCAAGTTTGTGGCGAAAAATACCTTAAATTGAGGCTTCTCATAATTCACATGAGCAagcattttaataattacagCTGTGAATTATGTGGCTCAGTTTTCATATCGCATAATTTACTTAAAAGGCATTTACAAACACATGAGGCGGGAAGCTTTCCATGCGACAAGTGTGATAAAGTATTTAGTAATTCAGCTAAAAGGACTTTACACGTGCGTGGGGTCCATTTGAAACGACTGCCTAGAAGATGTCCCATATGCCCAGAGAGATTTAATTCAAACTATCAAAGAACGAAACATTTGAGGATAGTCCACAAACAGAACACAGCATTGTTTAAATGCGAAACGTGCGGTAGAGAATACGACTTGAAATACCACCTTATGATCCATATAAGGTCCGTGCACTTACAAGAGAGAAACCTGGAGTGTCCGATCTGTCCTTCTCGCTTCTTCTCTAAGTATTGTTTATCGAGACACATGGTTATTCATACGGGGGAAAAGAATTTCAAATGCAACGTTTGCGGATTCGACAAGACAAACGTAACACCGGATAATCCGCAGCTGAAACGAGCCGTGCCCTTATTTCAAGTTGCATACGACCGCAATCTGTGTAAGCCTCTTGGGACGGTCACCGACTTCAGTAAAACCACGAGCAAGAAACCCAGAATAAGAGTTGCTAGCAATCTCATGCCGCATACACATTCAAGGAGCCCTTCGCCAATATCCATGGCGCTTGAATCCACAAAAACCAAACGCCAAACTTCAAAGTCAACAAAAAAGGCAAACTCCAGGCAAAACGCCCTCATCGTCTTCGAATTTAGCACTGTCTACCCTTTCAATTATGGCAGTAACGAGTTTAAGTGCTTCGTTTGCAAACAAACGTTTCTAGAATCATCTTTGTTAAGCGCGCATATGAATGAATCTCACACATTTGCCCCGCTAAAGAAGCTGGTGAACACCAGAAAAGAGGATATTCTCAAAGTAGACGTAAGCGATTTAACttgtaaaatatgttttacaAAGCAAAACAGCTTGGTAGATATGAAGATACATCTGAAGTTTGTTCACCAGAAACCGGTAGATCCAGAATTTAACGACAACCTTATACCATTTAAGTTATTTCCATCAGAAAGTGGCTACAAGTGTGTTATTTGCGATCAGCATTTTATGAAATTTAGAATATTGGTTATACATATGAACGTACACTTTAACAACTACAGTTGTGAAATATGTGGTTCTGGATTCATGGCTCTACGCCTATTAAAATGTCATTTGGTGATTCACGAAAGTGGCAATTTCCCTTGCGATCGATGCAACAAATCGTTTAGTACATCTTACAAGAGGAAGTTGCATATAAGAGGAGTGCACATGAAGCAACTATCTCGGCGATGCCCAATGTGTCCGGAAAGGTTCTATACTAATTATAGTAGAACTATACACTTACAAGATGTCCATAACCAGTCTACTAGGGTATATAAATGCATACTACAACCCAGCGATTCTACTCTCAAAATAAAAACTGAAGATGGACATGAGATCGTGTTGACTGTGCTCAAACGACCGATACCTCTAGATGATCTCAGCCGAGTGATTGAGGCTGACAGTAAAAAGAAGCATAAACGACAGAAACTTAAAGCTGAGAAActaaacttaaaacttaaaaacaacTACGCTAACGTCGATTTTCTTAAAGAACCTATATCCCTTAAAGATTGGAATAAAGATTCTGAGAAAAAAGAAGTAACGTTTAAAGTGAAAACTATTCAAGGCCCCTTTTTCACAGCTGCTTCTAAGAAAAGGGAGAATTCTTTGAAGTTACACGCGTGGAAAGAAAATGCTTTGAGCATTTTCGAAAATTCATACGTTTATCTGTTCATACACTCTGGCAACAGATACAAATGCTTCGTTTGCTCTGATCTGTTTGTAGATGCAAATACATTGAAAGATCACACTGTGACTGGGCATTCTTTCAAAGATTTGAAAAGGGAATTGTACAATAGAGTCAAAGATACTAACATAAAAGTAGATATAAGTAATTTGCAATGCAAGTTATGCTACATCAATTTGCCAAATTTTGACTCTTTGAAAAAACATCTCAAAGGCCATGGCAAGAATATAGACTTGAGTATACAAGATAACTTAATACCTTTTAAATTGGGTAAAGATTCCTTTGAATGTCAAGTTTGTGGcgaaaaatatcttaaattgAGGCTTCTCATAATTCACATGAGCAagcattttaataattacagCTGTGAATTATGTGGCTCAGTTTTCATATCGCATAATATACTTAAAAAGCATTTACAAACACACGAGGCGGGAAGCTTTCCATGCGACAAGTGTGATAAAGTATTCAGTAATTCAGCTAAAAGGACTTTACACGTGCGTGGGGTCCATTTGAAACAACTGCCTAGAAGATGTCCCATATGCCCAGAGAGATTTAATTCAAACTATCAAAGAACGAGACATTTAAGGATAGTCCACAAACAGAACTGTTGA
Protein Sequence
MNESHTFAPLKGLVNNRRENILKVEVSDLTFKICYKKQNSLIDMKLHLKFDHQKPIDPELKDNLIPFKLIPSVSGYKCVICDQHFDEVRILVIHMSVHLSNYKCESCGSEFMTLHLLKKHLDVHESGILQPSDSTLKIKAEDGHEIVLTVLKRPIPLDDLSRVIEADSKKKHKRQKLKAEKLNLKLKNNYANVDFLKEPISLKDWNKDSEKKEVTFKVKTIQGPFFTAASKKRENSLKLHAWKENALSIFENSYVYPFIHSGNRYKCFVCSDLFVDANTLKDHTVTGHSFKDLKRELYNRVKDTNIKVDISNLQCKLCYINLSNFDSLKTHIKDHGKNIDLSIQDNLIPFKLGKDSFECQVCGEKYLKLRLLIIHMSKHFNNYSCELCGSVFISHNLLKRHLQTHEAGSFPCDKCDKVFSNSAKRTLHVRGVHLKRLPRRCPICPERFNSNYQRTKHLRIVHKQNTALFKCETCGREYDLKYHLMIHIRSVHLQERNLECPICPSRFFSKYCLSRHMVIHTGEKNFKCNVCGFDKTNVTPDNPQLKRAVPLFQVAYDRNLCKPLGTVTDFSKTTSKKPRIRVASNLMPHTHSRSPSPISMALESTKTKRQTSKSTKKANSRQNALIVFEFSTVYPFNYGSNEFKCFVCKQTFLESSLLSAHMNESHTFAPLKKLVNTRKEDILKVDVSDLTCKICFTKQNSLVDMKIHLKFVHQKPVDPEFNDNLIPFKLFPSESGYKCVICDQHFMKFRILVIHMNVHFNNYSCEICGSGFMALRLLKCHLVIHESGNFPCDRCNKSFSTSYKRKLHIRGVHMKQLSRRCPMCPERFYTNYSRTIHLQDVHNQSTRVYKCILQPSDSTLKIKTEDGHEIVLTVLKRPIPLDDLSRVIEADSKKKHKRQKLKAEKLNLKLKNNYANVDFLKEPISLKDWNKDSEKKEVTFKVKTIQGPFFTAASKKRENSLKLHAWKENALSIFENSYVYLFIHSGNRYKCFVCSDLFVDANTLKDHTVTGHSFKDLKRELYNRVKDTNIKVDISNLQCKLCYINLPNFDSLKKHLKGHGKNIDLSIQDNLIPFKLGKDSFECQVCGEKYLKLRLLIIHMSKHFNNYSCELCGSVFISHNILKKHLQTHEAGSFPCDKCDKVFSNSAKRTLHVRGVHLKQLPRRCPICPERFNSNYQRTRHLRIVHKQNC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-