Basic Information

Insect: Agriphila straminella
Gene Symbol: -
Assembly: GCA_950108535.1
Location: OX467303.1:10315556-10339970[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 3.3e-05 0.003 18.9 0.4 1 21 140 160 140 161 0.95

2 13 0.00056 0.051 15.0 0.0 2 20 175 193 175 197 0.95

3 13 0.49 45 5.7 2.0 3 23 238 258 237 258 0.92

4 13 5.2 4.8e+02 2.5 0.4 2 23 326 348 325 348 0.84

5 13 0.44 41 5.9 0.1 2 20 354 372 353 374 0.90

6 13 0.00019 0.017 16.5 1.9 1 23 382 405 382 405 0.97

7 13 1.1e-06 0.0001 23.5 2.4 1 23 426 448 426 448 0.99

8 13 3.2e-07 2.9e-05 25.2 2.8 1 23 453 475 453 475 0.99

9 13 3.1e-07 2.8e-05 25.3 2.3 3 23 488 508 486 508 0.96

10 13 3.1e-05 0.0029 19.0 3.2 1 23 514 536 514 536 0.99

11 13 1.7e-06 0.00015 22.9 2.5 2 23 543 564 542 564 0.96

12 13 1.6e-07 1.4e-05 26.2 1.5 1 23 570 592 570 592 0.99

13 13 0.0022 0.2 13.1 0.6 1 23 598 620 598 620 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	3.3e-05	0.003	18.9	0.4	1	21	140	160	140	161	0.95
2	13	0.00056	0.051	15.0	0.0	2	20	175	193	175	197	0.95
3	13	0.49	45	5.7	2.0	3	23	238	258	237	258	0.92
4	13	5.2	4.8e+02	2.5	0.4	2	23	326	348	325	348	0.84
5	13	0.44	41	5.9	0.1	2	20	354	372	353	374	0.90
6	13	0.00019	0.017	16.5	1.9	1	23	382	405	382	405	0.97
7	13	1.1e-06	0.0001	23.5	2.4	1	23	426	448	426	448	0.99
8	13	3.2e-07	2.9e-05	25.2	2.8	1	23	453	475	453	475	0.99
9	13	3.1e-07	2.8e-05	25.3	2.3	3	23	488	508	486	508	0.96
10	13	3.1e-05	0.0029	19.0	3.2	1	23	514	536	514	536	0.99
11	13	1.7e-06	0.00015	22.9	2.5	2	23	543	564	542	564	0.96
12	13	1.6e-07	1.4e-05	26.2	1.5	1	23	570	592	570	592	0.99
13	13	0.0022	0.2	13.1	0.6	1	23	598	620	598	620	0.98

Sequence Information

Coding Sequence: ATGGCTTCTTCAGAAagcataaaaatcaaaatcgaaGACATTTGCCGTACCTGTCTTTCAAAAGAAAACGATTTACACTCGGTTTTCGAAGAGTCTGTTGGAACTGTTTCTCTTCATTGCTTAATCACAGAAACAACAGGCATACAAATAAATCAAAATGATGGACTACCTACAACCATATGTAATCTTTGTAAGGAGAAAGCTTCAAAAGCTTATGAATTTCGGAAACAATCCCAAGATGCAAACATcaccatacaaaattattataataaagaaaaacataatcagTCCAATGCTAATATCAAAACAGAGGATCCTACAGCAGATGATAATGATTATGTAGATTGGATGGGACTGGATGATTATAATGATCTAGACACAGTCAAGGATGAGACTGAAGATACCTCCATGCCAATGTATCAATGTAAAAATTGTGGTTTGGGTTtcaaaaatagtaataaactgCAAGATCATATGGCCAAAAATTGCCTAAAAGTTGAAATAGATGACACAGGAAGTAACTACTGTCCGTTATGTGGAATGAGTTACTATGATGCTGTTAATTTGACTGCACACATGTGGGAAAGCCATGCAGAGTTGATGGGGCCAAAGAAAAGAGGGAGACCTAAGAAAGCTTTAACAACAACTATATTAACAAAGTTATCAGAAAATGGGTTTCGACTGAAAGCAATTTCGGTTGAAAAAAAtgaatgtattatttgtaaaGAGCAATGTAAAACCAAAGAAGATCTAGGAAAGCATTTTATGAAGCATAAAGaTACTAAAGTATTGTGTTGTTTGTTATGCAAGAAGATGTATTTGAAAAGTAAGAATTTCAATCTGCATATTTGCGTGGATGTCGACAAaggaaacattaaaaaaagagaAaacgTTCCTGTTGATACTGGTAAAAATAAACAGAACCACCTGTCTGAAATAGCATTGGAAGAATTGTTGGAAATTAATGAAATCACGGTTTGTGAGGCGTGCACTTGTGTTTTTACATCGGAAGAAGATCAGTTAAATCATAATGACGTTGAGCATCCGGAACGTTCCTTGCGATGTAGTCTCTGTTTGAAGGTATTCGCTTCGGTAAAATCTGCTGCGCGTCACAGAAGTATTTGTAAAGAGATCGAAAGGAAGCACAAATGCAACACATGCGGACTAAAATTTGCATATGAAATCTCACTGAACAAGCATATACTACGATATCATGAAGGCCAAAGTGTTTCGGTTAAGTTCATGGACACTAAAAGTAAGGAAGAAGAAAAACAATACCAGTGTGACACATGTAGCAAACAATTTTCTAGGAAGGAATTACTTGCCAAACATACAAGAACGCATTCCGAAAAACTTTATGAATGTGACGTATGTAAAAAGAAATTCAATAGAAGCGATAATTTACGGTCCCATAAGCGAACACATGATCCTCGAGATAAAACTAAAGTGAACACTTGCCTCTGCCTGTACTGCGGTCGCAGTTTCAACAACTCTTCTAACCTTATTGTACATATGCGTCGGCATACAGGAgaaaaaccatacaaatgtgaTTTTTGTGGCAAAGGTTTTCCGCGATCCTCCGACCTTCAATGTCATAGAAGGTCTCATACTGGTGAAAAACCATGTGTCTGCCGAGTCTGCGGTAAAGGATTTTCTCGAAGCAACAAACTATCGCGACACATGCGCGTCCATACGGGCCTTAAACCGTACAAATGCACTTACTGTGAAAAAGCATTTTCTCAAAGCAATGATCTCACGCTACACATACGCCGACATACTGGAGATAAgccatacatttgtgaagtttGTGGAGACAGGTTTATTCAggGAACGGCGTTACACAATCATAGACGTACCCATGGTCATTACCCACCATCGTCGTCTGATGCTCAAACACAAGGGCCGGCAATAACGTACACTGTTCAAACCGTTACCCACCAAAATACCACACAGTAG
Protein Sequence: MASSESIKIKIEDICRTCLSKENDLHSVFEESVGTVSLHCLITETTGIQINQNDGLPTTICNLCKEKASKAYEFRKQSQDANITIQNYYNKEKHNQSNANIKTEDPTADDNDYVDWMGLDDYNDLDTVKDETEDTSMPMYQCKNCGLGFKNSNKLQDHMAKNCLKVEIDDTGSNYCPLCGMSYYDAVNLTAHMWESHAELMGPKKRGRPKKALTTTILTKLSENGFRLKAISVEKNECIICKEQCKTKEDLGKHFMKHKDTKVLCCLLCKKMYLKSKNFNLHICVDVDKGNIKKRENVPVDTGKNKQNHLSEIALEELLEINEITVCEACTCVFTSEEDQLNHNDVEHPERSLRCSLCLKVFASVKSAARHRSICKEIERKHKCNTCGLKFAYEISLNKHILRYHEGQSVSVKFMDTKSKEEEKQYQCDTCSKQFSRKELLAKHTRTHSEKLYECDVCKKKFNRSDNLRSHKRTHDPRDKTKVNTCLCLYCGRSFNNSSNLIVHMRRHTGEKPYKCDFCGKGFPRSSDLQCHRRSHTGEKPCVCRVCGKGFSRSNKLSRHMRVHTGLKPYKCTYCEKAFSQSNDLTLHIRRHTGDKPYICEVCGDRFIQGTALHNHRRTHGHYPPSSSDAQTQGPAITYTVQTVTHQNTTQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00448362;
90% Identity: -
80% Identity: -