Basic Information

Insect: Agriphila straminella
Gene Symbol: -
Assembly: GCA_950108535.1
Location: OX467304.1:32265372-32272020[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 7.2e-05 0.0066 17.8 0.2 1 23 220 242 220 242 0.98

2 11 1.4e-05 0.0012 20.1 3.0 2 23 250 271 249 271 0.97

3 11 2.7e-05 0.0025 19.2 1.0 1 23 277 299 277 299 0.98

4 11 1.2 1.1e+02 4.5 0.2 1 9 308 316 308 318 0.92

5 11 0.00012 0.011 17.2 0.1 1 23 347 369 347 369 0.97

6 11 0.0044 0.4 12.2 9.8 1 23 375 397 375 397 0.98

7 11 3.9e-09 3.6e-07 31.2 1.2 1 23 403 425 403 425 0.99

8 11 5.5e-07 5e-05 24.5 1.8 1 23 431 453 431 453 0.99

9 11 7.9e-05 0.0072 17.7 1.4 1 23 459 480 459 480 0.96

10 11 0.0059 0.54 11.8 3.1 1 23 486 508 486 508 0.94

11 11 2.6e-05 0.0024 19.2 1.0 1 23 514 536 514 536 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	7.2e-05	0.0066	17.8	0.2	1	23	220	242	220	242	0.98
2	11	1.4e-05	0.0012	20.1	3.0	2	23	250	271	249	271	0.97
3	11	2.7e-05	0.0025	19.2	1.0	1	23	277	299	277	299	0.98
4	11	1.2	1.1e+02	4.5	0.2	1	9	308	316	308	318	0.92
5	11	0.00012	0.011	17.2	0.1	1	23	347	369	347	369	0.97
6	11	0.0044	0.4	12.2	9.8	1	23	375	397	375	397	0.98
7	11	3.9e-09	3.6e-07	31.2	1.2	1	23	403	425	403	425	0.99
8	11	5.5e-07	5e-05	24.5	1.8	1	23	431	453	431	453	0.99
9	11	7.9e-05	0.0072	17.7	1.4	1	23	459	480	459	480	0.96
10	11	0.0059	0.54	11.8	3.1	1	23	486	508	486	508	0.94
11	11	2.6e-05	0.0024	19.2	1.0	1	23	514	536	514	536	0.98

Sequence Information

Coding Sequence: ATGGAACTCGATGAAATATACTTGGAGAATGAACATAGTTTGAATCCAAATGTATTGgataattgtataaaaattgaaGTTCCATACGAACTATACCAACATATTAAATCGAACGGAACATTAGATAATTTGTGCCGAACATGTTTAGCGCCAGTAGAAGAATGCTCTGTATCGTTACTGGCCCCAGTAGAAGAAGGAAGTCAAATGTGTTTACTAGATATGTTAAAAACCTTCACTTCTTTTCAAGAATTTTCAAGCACTGGTTTACCCATCTATATTTGTACAAAGTGTCATGTTGAACTTGTACAATGTTATAATTACAAAATCAAATGTGAGAATTCTGAATGCACCTTACAGTCATTATTAAAAGGACAATTTATACCCACTGCCGAGAGCATTGCAGAAGTTAGggaCATATTAAATAAATGCGAAGAATCCACTTTAAAGTTTGATAGAgaaaatgaatataatattaaagaaGTCATGAAAGAAGaatTAGATGTCCAACATCTTGATGACTTTGATTATGTTGAAAGTGACAATGAAGCTCTTCATATTGTACTGGAAGAGGAACAACAAAAgaacaaaaaagaaattaagTACACAGGCAAAAGTATTCAACTATTCTCAGTAAAACAGCAAAATCAAGATAATTCTTATCCGTGTGGGGAGTGCAAAGAGGTGTTCAGTTCTCAACATGACCAGCAAGTACATATGGCTGTGCATAGCATGGTAGGCTCCATGTGGAAATGTAAAAAATGTCCCAAAGAGTtcaaaaAAAAGACGTTGTTGCGCCGTCATGTCCAACGACATATGGAATCGAAGCGATTCAAATGTTCAGTGTGTGAGAAGTCTTTCGCAGAATTCTATGCTTTGCGACGACATAGTCGAGTTCACACGGGGGAAACTGTAGAGAAGAAACACGTCTGTAACATCTGTGGTAAAAGCCAAGTTAACGATACCCTCGGCTATCGGCACAGATACGAAGGCAGCAACCAGCTGAACGCGCACATGTCGCAGCACGGCAGCGAGCGGCCGTTCGTGTGCGCGGCGTGCGGCAAGGCGTTCGCCACCGCGCGCCTGCTCAAGTCGCACCGCCTCGTGCACTCCGACCACAAGCCCTACGCCTGCCACTACTGCGACAAACGGTTCCGTCATGATTCAACGCGTAATACGCATCACCGCACGCACACTGGAGAGAAGCCTTACGTGTGTTCAACTTGCGGCAAAACCTTCATTCAGAACTCCAACTTGCGGCTGCACATGAGGACACACACGGGTGAGAGACCTTATTCATGTGATAAGTGCGATAAAAAGTTCACTTCGGGATCCTCCCTGAAAATGCACATACGCACTCACACGGGAGAAAAACCATACAGCTGCAAAATTTGCGGCAAAAGaTTCGCACGGAGGGATCTAAGCACGCATATGCGTAATCACACGGGCGAGAAGCCGCATGCGTGCAGCCTGTGTCCCAAGAAGTTTGTGAACGCCTCACGGTTGCGAGACCATTGCCGAATACATACAGGCGAAAAACCATTCGAGTGTGCCACTTGCACACAGACCTTTCCAACGAAGGCTTACCTAATTAAACATTTGAAGAAacatcaaacaaaaaagaaacaagAGAAAGAAAAGCATTTACAGAAGAAACAGTACTTTGTCATGCAACATATTGAGCCGTTGCTGAACATTAATTATCCATATACAATATCAAATGAAGAAGCTAAAACAGTctcaaataaatatgaaaatacaCATGTGACATCCGTGGATGGTATCCAACTTGAAGTAGACCATAATATGCCATTAGAAGTTACAGGAGAATTAGTTGTACAGGACGAAGGGGAAATCTTAGTTGTAGATAATAGTCAAAACCAAAATAGTCTATATCTAAGCACTGAAACGGTAAACCGATGTGAGGAGTTTGACGGAAATGTAAATTTAGTGACTGTGACTGAAAGTGAAGTGAATATATTGGATACAAAATCTCTTTTAGAAGAATCCACAGTGAAACTATTTCAAATTCATCGCAATAACACTAGTTCAAACACTTAG
Protein Sequence: MELDEIYLENEHSLNPNVLDNCIKIEVPYELYQHIKSNGTLDNLCRTCLAPVEECSVSLLAPVEEGSQMCLLDMLKTFTSFQEFSSTGLPIYICTKCHVELVQCYNYKIKCENSECTLQSLLKGQFIPTAESIAEVRDILNKCEESTLKFDRENEYNIKEVMKEELDVQHLDDFDYVESDNEALHIVLEEEQQKNKKEIKYTGKSIQLFSVKQQNQDNSYPCGECKEVFSSQHDQQVHMAVHSMVGSMWKCKKCPKEFKKKTLLRRHVQRHMESKRFKCSVCEKSFAEFYALRRHSRVHTGETVEKKHVCNICGKSQVNDTLGYRHRYEGSNQLNAHMSQHGSERPFVCAACGKAFATARLLKSHRLVHSDHKPYACHYCDKRFRHDSTRNTHHRTHTGEKPYVCSTCGKTFIQNSNLRLHMRTHTGERPYSCDKCDKKFTSGSSLKMHIRTHTGEKPYSCKICGKRFARRDLSTHMRNHTGEKPHACSLCPKKFVNASRLRDHCRIHTGEKPFECATCTQTFPTKAYLIKHLKKHQTKKKQEKEKHLQKKQYFVMQHIEPLLNINYPYTISNEEAKTVSNKYENTHVTSVDGIQLEVDHNMPLEVTGELVVQDEGEILVVDNSQNQNSLYLSTETVNRCEEFDGNVNLVTVTESEVNILDTKSLLEESTVKLFQIHRNNTSSNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00284753;
90% Identity: -
80% Identity: -