Basic Information

Insect: Agriphila straminella
Gene Symbol: -
Assembly: GCA_950108535.1
Location: OX467309.1:14386143-14395531[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.0088 0.81 11.2 1.5 3 23 696 717 695 717 0.96

2 23 0.43 39 5.9 0.3 1 22 1125 1146 1125 1146 0.95

3 23 0.56 52 5.6 0.2 1 23 1187 1210 1187 1210 0.92

4 23 0.0013 0.12 13.8 0.1 2 21 1220 1239 1219 1240 0.94

5 23 0.9 82 4.9 0.1 3 23 1249 1270 1247 1270 0.89

6 23 0.00099 0.09 14.2 0.7 3 23 1291 1312 1289 1312 0.97

7 23 0.0055 0.51 11.9 2.2 1 23 1318 1341 1318 1341 0.95

8 23 0.16 14 7.3 0.0 1 23 1366 1389 1366 1389 0.90

9 23 0.024 2.2 9.9 3.4 1 23 1394 1416 1394 1416 0.97

10 23 0.02 1.8 10.1 0.2 1 23 1422 1445 1422 1445 0.95

11 23 0.0025 0.23 12.9 3.5 1 23 1458 1480 1458 1480 0.98

12 23 0.00022 0.02 16.3 1.8 1 23 1534 1557 1534 1557 0.97

13 23 0.002 0.19 13.2 1.7 1 23 1618 1641 1618 1641 0.96

14 23 0.003 0.27 12.7 2.1 2 23 1667 1689 1666 1689 0.95

15 23 0.11 10 7.8 0.1 2 23 1695 1717 1694 1717 0.93

16 23 0.012 1.1 10.8 0.2 1 21 1760 1780 1760 1781 0.95

17 23 0.0015 0.14 13.6 0.6 1 23 1791 1813 1791 1813 0.93

18 23 0.00014 0.012 16.9 0.4 2 23 1900 1922 1899 1922 0.93

19 23 4.2e-07 3.8e-05 24.9 1.4 3 23 1929 1949 1928 1949 0.98

20 23 0.053 4.9 8.8 0.0 1 23 1968 1991 1968 1991 0.95

21 23 0.18 16 7.1 0.0 1 23 2014 2036 2014 2036 0.98

22 23 0.035 3.2 9.4 0.6 1 23 2042 2065 2042 2065 0.95

23 23 0.00032 0.029 15.8 0.4 1 23 2073 2096 2073 2096 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.0088	0.81	11.2	1.5	3	23	696	717	695	717	0.96
2	23	0.43	39	5.9	0.3	1	22	1125	1146	1125	1146	0.95
3	23	0.56	52	5.6	0.2	1	23	1187	1210	1187	1210	0.92
4	23	0.0013	0.12	13.8	0.1	2	21	1220	1239	1219	1240	0.94
5	23	0.9	82	4.9	0.1	3	23	1249	1270	1247	1270	0.89
6	23	0.00099	0.09	14.2	0.7	3	23	1291	1312	1289	1312	0.97
7	23	0.0055	0.51	11.9	2.2	1	23	1318	1341	1318	1341	0.95
8	23	0.16	14	7.3	0.0	1	23	1366	1389	1366	1389	0.90
9	23	0.024	2.2	9.9	3.4	1	23	1394	1416	1394	1416	0.97
10	23	0.02	1.8	10.1	0.2	1	23	1422	1445	1422	1445	0.95
11	23	0.0025	0.23	12.9	3.5	1	23	1458	1480	1458	1480	0.98
12	23	0.00022	0.02	16.3	1.8	1	23	1534	1557	1534	1557	0.97
13	23	0.002	0.19	13.2	1.7	1	23	1618	1641	1618	1641	0.96
14	23	0.003	0.27	12.7	2.1	2	23	1667	1689	1666	1689	0.95
15	23	0.11	10	7.8	0.1	2	23	1695	1717	1694	1717	0.93
16	23	0.012	1.1	10.8	0.2	1	21	1760	1780	1760	1781	0.95
17	23	0.0015	0.14	13.6	0.6	1	23	1791	1813	1791	1813	0.93
18	23	0.00014	0.012	16.9	0.4	2	23	1900	1922	1899	1922	0.93
19	23	4.2e-07	3.8e-05	24.9	1.4	3	23	1929	1949	1928	1949	0.98
20	23	0.053	4.9	8.8	0.0	1	23	1968	1991	1968	1991	0.95
21	23	0.18	16	7.1	0.0	1	23	2014	2036	2014	2036	0.98
22	23	0.035	3.2	9.4	0.6	1	23	2042	2065	2042	2065	0.95
23	23	0.00032	0.029	15.8	0.4	1	23	2073	2096	2073	2096	0.96

Sequence Information

Coding Sequence: ATGAGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGTGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGATTTGGAACCTCCCGTTCTTGcatcgaaaataaaggattgtGTCTCTGTTCAGATAAGCGAGAATGACGACCTGCCAACGAATGTCTGCAGGAAATGTGTGGATAACGTCAATAACTGGCATATATTCAAGGCAGTATGTGAAAGGACACAAAACAAACTTGAGTTACTGATAAAAAAGGATGGAAGCCAACTAGAAGAGATAAAAGTAAAGCTTGAACCTCTGTCAGATGGTGCATATGATGATGGTGTGGTCATTGATGGCTCATACCCTAATAATGATGGTGCGGCAGTTTCAACCAAAGTGCAGCCAGAAGGCCCACCAATCTTGGCATCGTTGGGACTCACTCCGAGGAGTGATAAGAAATTCATAGATCCTAGAATGGACTGGCATCGAGTCCATGCAATACTGGATATGGTTCAAGGTGATGATGTCATTGACGCACTGCAGTCCATAGAGGAATGCGATGTTGTGCGGCAGTCTGATCATGACTCTGAGTCAGAAAGTGAACTTCAAGGTGAAATAGATGACACCTTTGTAGACTTCAAGAATGGATACATTTGTAagaataaaaagcttttgtcAAAAACTCCTAAAGTCTCTTCAAAAGatgtaaaaaatgcaaaaattaaaCAGGCTTTAGTTCTGAGGAAACGGAAATTTGATGAAGCTAAAAATTGTTTGCTTCCGAAACAAGCATGGCAGATGCTATTTAGTGATGATTTGATTGAGTTAATTGTGGTTTCAACAAACCACAGAATTCTTAAAATGGGTCATAGCATTGCATCATCTACCAACGTTGGAGAAATAAAAACACTTATTGGAATTTTGTACCTCCAGGGCATCATGAGACCGACTCACCAAGTTAGCCGTGATCTTTGGAATAAAGAATATGGCACTCCATGTGTCAGGAATACTATGAAATATGACAGATTTAAGTTTCTAATTCAGAATATATGCTTTGAAAATGAAGAAGAAGAGAGCATCATAAAGTTTGATATAATGAAAAGGATGAGGAAAGTGTTTGAAATATTCGCTATGAACTGTAGAGCGTCATTTGAGATAAGTAGTATGGCTGTTATTGATGAAATAATTGTTCCCGTTTATGGCCCCTGCCCATTCAGATATGAGAATCAAAATAAGCCTCTGAAATGTGGTTTGAAAATGGTACTTTTGGTGGACCCAGTTAACTTATATGTGAATAACTTGGATGTTATAACAGACTCATGTTTTGGTCCTGAGgaagtagtgaaaaaaattgttcaacattTATCTGGTTCTGGAAGGACTATTATCATGGACAGTTGGTTCACCtcattaaatttaattgaaGCTTTGAAGAAGGAATACGAGCTGTATTCCATTGCAGCTGTACATGCAGATGATGATATAGTACCACCTGTGTTTTTATCTACTTACAGAAAAAAGGAAAGTTATCTGACAGGTTTTCTAGATGAAAGCATCCAACTAACGTCATATATAAATGAGGATTCAAAATGTTTGAATGTTATGACAAATGACCTCAAATTTTACAAAAGGGGATACTCTTCTGCTAAACACATGACGGTTGTTGCTTCTTATAAGAAAAATCATTCTGCCGTAGAAGTTGTTGATGTGTTAATGAATTATTACACAACTATGCAACATACAAATGACTGGACGTTAtctttatttttcactttactTAACATTGCATCAGTGAACGCTCAAGTTATTTGGTGTTCGCAAAATTCTTCTCAAGTTATGAAGCGTCGTTCTTTTATAATGAATTTGGCACTTAGCCTTATAGAATATGGAGAGCCTATTTCTCCCTTATTAGACGTGTCAGGGGTCGAGAGTGAGAAAGAGGAAGATGAAGAAGACGAGGAAGGAGCACCAGACCCAGTTCCAAAATATGCAAAAGTGCCGCGGATGCCCGAAGTATCCATCACGGTGATGAGGCCCTCGGGCGAAACACTGCATTCTCGACAGGGTATCCAACAACTCGCCTCTAAAGACTGTCTCGTCTGTGGCCGCTCCTACAGGTATTCCCACAACGCAAGACGTCACGAACTCACTTCTCATAGTTTCGATAGGTACACTAACAAAATTACACACAAAAAGCAACCGTCATTTATGCAACCGAAACTAAGGCCGAACCCTTTCAATCCTAAAGCGCGGTTGATGCCAAATCCGATTAgccataaaattaaactcatGTCCAAACCGATGCCAAATAAAATGGTTCCACACAAAGTTCTGACGCAAACACCACCGAAACCTGCTTTAATTAAGAGTAAAAAGGGGGCGCATAATAATTTGCCTTACCCTTTGCGTATTAAAGCTCTGAAAGAtttacaaataaagaaaaaggaaCCACAAATTTTGAAAACGCTTTTGACTGCTAAACCAGAACTTTTAGTAGCTGAACCCGAAATTCCTCATTCGGGTCCAGAAAGTCCAGAAACATTGATTTCGGAGCCAGAAATCGCATCATTCCAAGTAGAAGCTGTATTGTCGGAACCAGATGCATATGATAAACAGCCAGATGATTCTTACGACCAGCAACAAGATGGATATGATCAACAAGCAGATGGTTACGATCAACAGGGTGGTGATGAAGAGGGTGAAGAAGATGAaacaaataatcaaaatcaGCACTATGATACTGTTGACATGGAATCTGACAATGAAATTGAAATAGCTCGAGAAAAAGATAATGAAGTTGATGAAGAAGATCAAAATATGGAAGCAGATAATAACCAAAACGACGAGGAACATATTGAAGATGGGACACAAAGTGACACTGAAAGAAATAACGCGGAAGATAATGacgaaaatgaagaaaataatggTGCAGATGATAATGCGGAAGCTGTTGAAAATGACGCTGAGGGCGATGATGTCAATGATAATGAAGACGGAGAAAATGAAGTGCATAACGCTAATCATGACGAGAACGTAGATGAAGACGATGAGGATCTTCCTCCAATGGAAATAGCTCCTGTCGTCGAGATCAATGAGGATATGCAGACCAACTCCTGCAACAGTGAGCAAAACGAAGAAGAAGAGGAAGAGCTTGgagaaacagctgatttaaaTGTCACCGCTGATGGCGTAGAGGGAATCAAAGAAATCGACCCGGATAAACAATATGTGACAAAAACACAGCGCGATTTCATTCAAAAATATCGCAATATTATTGAACAGATCAATACGAAACGCTGCCTTTGTTGTGACCGAGAACACCCCCGCAGGAAATCAGTCATACAACACTTACAGAAAAATGGACATAAAGTACCAAAACACACATGTTATAATTGTGTTGTTACTTTTGGCCATATTGGAGCTCTGTTAAGCCATATGCGTTCTAATTCATGCACTAATTTATGGAAAATTATCTATAATGAAAATGGAATTACTGATGATATGGTCTTAGAGGATCCTAAAGATAATAAAGTTCAATATAAAGATATTTTCAATGCTAGATCGTATGCTTGTAAACTGTGCCCAGCGAAATTCCAATTAAAGCAAAATATTATGAAGCATGTATTAGAAGTTCATGAAGATGGTCAATCCCGAGTTCCACTCGTCTGCGTTCACTGTGGAGTTCGGTTCAAAGACAAGGGTTTGATTAAGAGGCATATTCGCATTGGTGGATGCACTGTTTATATAGCTTGTGATTTATGTTCAGAAAAGTTTGTAAACATGCAAGATTTTAACGACCACGCTTTAGGCGTTCATGCCGGAAGTTTTGATCAATCTGACAGCCAAAGTAAATGCGTCGACGGGCGACCTACTGATTGCCCAATATGTGGCAAGAAGAACAGTAACTATCCGAATTTGACCAAACATTTGAAGACTTTCCATAACGAAGAAAAGCCACATTACTGTCAACATTGCGACGTCAAATATGAGCAACTGGCTGATCTTAATAAACACATTTACATGGAACATTCGGATTTCAGTTTTGCGCAAAGTAGTGAACCAGACATGTCTCTTGTAAAAGAAGAGGCCGAAGAGTATCATTATTCGTGTACGGAATGTAACGCTATTTTTGAAACTGTTGACGCATGGACTGATCACCAAGTTGCAGAACATAATCAAACTGCTCATCACTGCGACCAATGTGAGAAGAAATTCTTACGACCATCAGAGCTCGCTGAGCATAAAAACACCCATCTGCGTGTCAAATTTTATCCTTGCAGTGTTTGTTCAAACTCATACAGCACGCCGCAAAAGTTGTCCGATCATGTTCAAAATGCCCATCCCGGGGTAGGACAATTCACATCTATGGAGTCTGAATTTTACTGCCACATTTGCATAAGATCGTTCAAAAGTCGTCAAGCTTACTCCAATCACATGCGTATTCATGCTAAAGTACCAACTACTAACCGAAAGCCGGGAGAGCCGAAAGGAGGTTTTGCGCCACAAATAATCGGCAAGCCTATCAGACAATTCACACCGGCGCCGGTCCAACAAGCGGCATCCAACATAGTCTTTAAACAAAACAGCAATGTTCCTAATGCTCCATATTCGTGTGATATTTGCGGTAAAGGTTTTATgcataagaaaaatatttggaaGCATAAAAAAGTACTTCACGCTGACCTCGTCAATGATAGGAACGATAGTGAAGAAAATACTATGCATGCTTCTACCGAAGAAGACGAGTATAATAATTTTGACGAAAATGGAGCTTTACTGTCTACACCGCAATTCAACAGTTTCAACTTTGCCAATTTTAGTAACGCACAGCAGCAACCATCCCAAGACCCGATGCCTTTCTCGTGCGAACTTTGTTTCAAACGATTTCCACTTAGAAGTAGTTTGTGGAAACATAAACGAGCAAAACACGGCATCATTAATGTAAATGCGAGTGGTACTGACACTCAAGCTCAAGCGACTCCCAATGAAGCTGGTAATAGATCCAGTTGTACGATATGTAGGATTACCTTTTCTGACAAGAAGTCTTACTATCGCCATAGAAAGAATGTTCATAAATCGACTACTCAAATGTGCAAAATATGCGGTAAGCCACTTAACTCGACTTTGGAGTTGTACGAACATCTGAAAGCTGCACACGCAAGAGAATTACTAGGGTATGATGCCAGTCAAGGTTCCAGCAAAGTAACAGATATGAAAGAAGAGGTCGAGGATTACGAAAACGATCAGGATTCAGTAGACCCTGGAATCGAGTATCAAGCGAAGTACCCGTGCGACACGTGCGGCAAACAGTTTGTTGGATTACTAGCACTACAGAATCATCAGTGTATTAATCAAATATCATCGCAACCTCAGACGTTCGACTGTGAAATATGTCACAAGAGCTACACGTCTATAGCGGCGCTTAAAAGCCACCGCGGCTGGCACCTACGATCGCCGGACGGCAAAGCGGCCGCGAATAATACCGGGCTCTGGATGCCTCAACATAAAGTGACCAGTAAAGTGAGTAAATACGAGGTAGTGGACCCCGTACAGCTAGCGCGCCCCGTACACCAGCCGCCCGCCGCCACCGTGACCGCCAAAAGGAGACTTCCGCCAGAAGTGGAAGTCACCGTCGTGAATCCAAATAAAAAGTTACGATCGGACGATTCCGTCGAAATGGAACAGGCCGGTTCCGAGGATAAATACTGCACAATTTGCGATAAAGAGTTTACGAAACGCGCCGCTTACCAGCGTCACATGGATGAGGTGCATCAGCCGAATTCCGTGTTCTGTCCAGTGTGCGACAAGAGTTTCACTCGAAAGTCGACCCTGCTCGTCCACATGAAGAAGCATTACGAAGGCGGTGAGGGCAGCTCCACTGGGGCGGCCCTTGCGGAGGACGAGGGGTACGCGTGCGACGTGTGTGGCGCGCAGTACGATAGCGAGCAGGCGTTGATGAACCACCGAGCTCGGCAGCACGCGGAGGACGAGGGCGAGTCGGAGGATGACGACGGCGAGGCGCCGGCGCCGGCTCAGCCGGGCGAGTTCACGTGCGCGCAGTGCGGCGACGGCGTGGCCACGCCGCGCGACCTCATCGCGCACCGCTCCATGCACGCGACCCCCACCAAATTCTTCTGCAACATTTGCAAAGTTTACTTTGCGAGAGCTCTCGATCTGTCCTCGCACACGCGGGCGAGGCACTCCGACAACGAAAAGGTGTTCTTTCCATGTGCCATGTGTGACCGTTTTTACATGAACAAGAAGAGTTTGCAGCGACATATCGAAATGGCGCATTGA
Protein Sequence: MSVNYDRVCRLCLSSRGELLPIFPTTSSDDLEPPVLASKIKDCVSVQISENDDLPTNVCRKCVDNVNNWHIFKAVCERTQNKLELLIKKDGSQLEEIKVKLEPLSDGAYDDGVVIDGSYPNNDGAAVSTKVQPEGPPILASLGLTPRSDKKFIDPRMDWHRVHAILDMVQGDDVIDALQSIEECDVVRQSDHDSESESELQGEIDDTFVDFKNGYICKNKKLLSKTPKVSSKDVKNAKIKQALVLRKRKFDEAKNCLLPKQAWQMLFSDDLIELIVVSTNHRILKMGHSIASSTNVGEIKTLIGILYLQGIMRPTHQVSRDLWNKEYGTPCVRNTMKYDRFKFLIQNICFENEEEESIIKFDIMKRMRKVFEIFAMNCRASFEISSMAVIDEIIVPVYGPCPFRYENQNKPLKCGLKMVLLVDPVNLYVNNLDVITDSCFGPEEVVKKIVQHLSGSGRTIIMDSWFTSLNLIEALKKEYELYSIAAVHADDDIVPPVFLSTYRKKESYLTGFLDESIQLTSYINEDSKCLNVMTNDLKFYKRGYSSAKHMTVVASYKKNHSAVEVVDVLMNYYTTMQHTNDWTLSLFFTLLNIASVNAQVIWCSQNSSQVMKRRSFIMNLALSLIEYGEPISPLLDVSGVESEKEEDEEDEEGAPDPVPKYAKVPRMPEVSITVMRPSGETLHSRQGIQQLASKDCLVCGRSYRYSHNARRHELTSHSFDRYTNKITHKKQPSFMQPKLRPNPFNPKARLMPNPISHKIKLMSKPMPNKMVPHKVLTQTPPKPALIKSKKGAHNNLPYPLRIKALKDLQIKKKEPQILKTLLTAKPELLVAEPEIPHSGPESPETLISEPEIASFQVEAVLSEPDAYDKQPDDSYDQQQDGYDQQADGYDQQGGDEEGEEDETNNQNQHYDTVDMESDNEIEIAREKDNEVDEEDQNMEADNNQNDEEHIEDGTQSDTERNNAEDNDENEENNGADDNAEAVENDAEGDDVNDNEDGENEVHNANHDENVDEDDEDLPPMEIAPVVEINEDMQTNSCNSEQNEEEEEELGETADLNVTADGVEGIKEIDPDKQYVTKTQRDFIQKYRNIIEQINTKRCLCCDREHPRRKSVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNSCTNLWKIIYNENGITDDMVLEDPKDNKVQYKDIFNARSYACKLCPAKFQLKQNIMKHVLEVHEDGQSRVPLVCVHCGVRFKDKGLIKRHIRIGGCTVYIACDLCSEKFVNMQDFNDHALGVHAGSFDQSDSQSKCVDGRPTDCPICGKKNSNYPNLTKHLKTFHNEEKPHYCQHCDVKYEQLADLNKHIYMEHSDFSFAQSSEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQTAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCSNSYSTPQKLSDHVQNAHPGVGQFTSMESEFYCHICIRSFKSRQAYSNHMRIHAKVPTTNRKPGEPKGGFAPQIIGKPIRQFTPAPVQQAASNIVFKQNSNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLVNDRNDSEENTMHASTEEDEYNNFDENGALLSTPQFNSFNFANFSNAQQQPSQDPMPFSCELCFKRFPLRSSLWKHKRAKHGIINVNASGTDTQAQATPNEAGNRSSCTICRITFSDKKSYYRHRKNVHKSTTQMCKICGKPLNSTLELYEHLKAAHARELLGYDASQGSSKVTDMKEEVEDYENDQDSVDPGIEYQAKYPCDTCGKQFVGLLALQNHQCINQISSQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNTGLWMPQHKVTSKVSKYEVVDPVQLARPVHQPPAATVTAKRRLPPEVEVTVVNPNKKLRSDDSVEMEQAGSEDKYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYEGGEGSSTGAALAEDEGYACDVCGAQYDSEQALMNHRARQHAEDEGESEDDDGEAPAPAQPGEFTCAQCGDGVATPRDLIAHRSMHATPTKFFCNICKVYFARALDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -