Astr025951.1
Basic Information
- Insect
- Agriphila straminella
- Gene Symbol
- -
- Assembly
- GCA_950108535.1
- Location
- OX467322.1:7560683-7567085[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-07 0.00017 22.2 0.0 4 37 37 71 36 78 0.84 2 2 5.5 5.2e+03 -1.7 0.0 17 25 269 277 264 277 0.83
Sequence Information
- Coding Sequence
- ATGGCATCGAATTACGTGTCGGACTGTCGGAGTATAGCCGACAAGCGCGCGCAAGTGCGACGCgatgCCAAAATACAAACACAAAAAGAGGCAAAATATTCTTTTGCTGATCTAATAGAAGCAGTCGAAAATGTACGGCAAAACAAGATGAACAGCTACGAAGCCTCCATAAAATATGAAATACCGAGGTCAACTATTATTCACCGTCTGTATGGAACACGTGGTGCCAAACAGCCAAAGCCTGGCAGACCCACTGAATTTACGCAAGAATGGGAAACCAAAATAGCTTCCCATCTCCATGTGATGGAAAAGATTGGTTATCCGTTAACAACTAAGGAAGTGAAAATTTTAATATCCAATTATATTCGTAGAAATGGAGTAATAACAAGGTTTAAAGACGACTACCCTGGGAAAGAATGGTTCAGGGGATTcaaaaaacgaaataaattaagtttgaaAAAGCCACAGTCAGTGGAAGTTGCTCGCAAAAAAGCCTGTAATCCATTCACGGTTTACAATTATTTCGAATTGTTAGAACGAGCAACAAAAGAGTTGGGAGTGGCTGACAAACCACAATGTATATATAATTTAGACGAAACCAGCTTTTGTAGTGATCCCACCAAAACTAAAATTGTGGGTCTGATGGGGTTTCCCTCTACTAGAACGACTGGCTCCCCCGGAAGAAATAACACAACTGTACTTTTAGCTGCGAATGCGCTTGGCGAAAAGATCCCCCccttaataatattccaggggAAACACCTATGGAGCTTCCTTTTCTGTTACAGTGTAGTTACATTCGGCTGCAGCATTAAAAAAGCTGCAAAGAAGAAATCTTCTGTTCAGAGACAGGAGATGTACCGAACAGGAGGGGGTCCTTCAAATGCTCCTGATTTCACCGACGTTGAAGAAAAGGTGATAAGCATTTGCTCCAACATAAAAGGGCTTGAAGCTCGTCATGATAGTGACACAATCCTAAATGAGAACAAATGGGACAAGTGGCACCCAAAAGCTTTGAAAACCAGAGTTTCTAATGTACTTAAACCAGACTCTGTAAATAAAAGCAGCGTCACTGCCAAACTAGATAAATTAAGTTCGGCTCGGTTGGAACTTGTCCGAATTCAAACAGAGACTGCCAGAAAAGAGCAGCAGTTCAAAGAAGAAGAGCATAGATTAAAAATGGAGCATCTTGCTAACGATGAGAGAAGAAAGGAAGAAATACATCAACTGCtgattaaaaagtttattacaagttttaatgagattattaattaa
- Protein Sequence
- MASNYVSDCRSIADKRAQVRRDAKIQTQKEAKYSFADLIEAVENVRQNKMNSYEASIKYEIPRSTIIHRLYGTRGAKQPKPGRPTEFTQEWETKIASHLHVMEKIGYPLTTKEVKILISNYIRRNGVITRFKDDYPGKEWFRGFKKRNKLSLKKPQSVEVARKKACNPFTVYNYFELLERATKELGVADKPQCIYNLDETSFCSDPTKTKIVGLMGFPSTRTTGSPGRNNTTVLLAANALGEKIPPLIIFQGKHLWSFLFCYSVVTFGCSIKKAAKKKSSVQRQEMYRTGGGPSNAPDFTDVEEKVISICSNIKGLEARHDSDTILNENKWDKWHPKALKTRVSNVLKPDSVNKSSVTAKLDKLSSARLELVRIQTETARKEQQFKEEEHRLKMEHLANDERRKEEIHQLLIKKFITSFNEIIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -