Astr027987.1
Basic Information
- Insect
- Agriphila straminella
- Gene Symbol
- -
- Assembly
- GCA_950108535.1
- Location
- OX467324.1:2254383-2256905[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.2e-10 3e-07 31.0 0.0 7 40 130 163 129 166 0.93
Sequence Information
- Coding Sequence
- ATGCCGCCTTCTGGTAGGAGCAGTGATGTCTGGCGTTTCAGAAAGGTTGACAAAACTACTGCAGTCTGTAAAATCTGTTTTAAAGTACTTAAAACAAGTGGAAACACGTCTAATTTGAAGAAACATTTAAAAACTCAGTCAACAGAGctcaGAAGCGGTGATGGTAGAGCAAGTACGTCCAAGGCAGTTATACAAGACGACACAGAGTTTGAAACAGATGCAGAAATAGAAATTATAACAACTGCTCAAAAACAAGATGACAATATGTCAATTACAGCAAGTACTAGTAATAAACCCATGGCTGAAGGTGAGCAAATAGGGTCGatgtcgttcaataaaaataaaaagaagaaatatGCAAAATATTCACTAGAATCTCTGGAAACTTTGGCTTTGAAAGATATAAGGGAAGGCGGGCAGAGTATAAGAGAAACGTGCAGAAAATATGGGATCCCAAGAACAACAATACAAGACAGATTAAGTGGCAAAAGAGCTGatgaattaaaaaacagagGTCCAGAGCCAGTATTAGGTAAATCTGGAGAAAAACAAGTGGTTGAATGGTTGATCAATATTGCCAAATGTGGTTTTCCTGTAAAAAAACAAGAACTTTTGGATACCGTGCAGAAAATTCTGAAAGATCTTGACAAACCTAATCCATTTAAGGACGATCGCCCCGGTCAGACGTGGTTTTTAAGTTTCCTCAAAAGAAACCCTGAAATCTCACGTCGATCTGCCGAAGGCATAAACAAGGCTCGTGCACGTGTTACGGAAGAATCTATTCGGCTATGGTTTAGGgaatttgaaacttttttatctGAATCAGGGCAATCAGATATACTTCAACATCCAGAACGCATATTTAACTGCGACGAAAGTGGATTTTCATTATGCCCTAAAACGGGAAAAGTTCTTGGAAAGGGCGCTCCACATTCTCAAGAGAATCTCGCGAGAACGCGAGAAACATGCGAGAAACGTGAATGTGGAAGCGATTTCTCAAGTTCTCGCGTTGTTCTCCAGCTTTTCTCCACTTTTTGTCGGTTTTTTGGCGCGAGACAAAGGAGCGCGAGAACGTGA
- Protein Sequence
- MPPSGRSSDVWRFRKVDKTTAVCKICFKVLKTSGNTSNLKKHLKTQSTELRSGDGRASTSKAVIQDDTEFETDAEIEIITTAQKQDDNMSITASTSNKPMAEGEQIGSMSFNKNKKKKYAKYSLESLETLALKDIREGGQSIRETCRKYGIPRTTIQDRLSGKRADELKNRGPEPVLGKSGEKQVVEWLINIAKCGFPVKKQELLDTVQKILKDLDKPNPFKDDRPGQTWFLSFLKRNPEISRRSAEGINKARARVTEESIRLWFREFETFLSESGQSDILQHPERIFNCDESGFSLCPKTGKVLGKGAPHSQENLARTRETCEKRECGSDFSSSRVVLQLFSTFCRFFGARQRSART
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00035915;
- 90% Identity
- iTF_00035915;
- 80% Identity
- iTF_00035915;