Basic Information

Insect: Agriphila geniculea
Gene Symbol: -
Assembly: GCA_943789515.1
Location: CALSUL010000074.1:1105224-1107941[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.011 2.2 10.6 2.8 2 23 69 90 68 90 0.96

2 12 5.3e-05 0.011 18.0 4.2 1 23 96 119 96 119 0.97

3 12 0.0015 0.31 13.4 1.8 2 23 131 152 130 152 0.97

4 12 0.13 25 7.3 9.4 1 23 161 183 161 183 0.97

5 12 0.11 23 7.5 1.9 1 23 188 211 188 211 0.96

6 12 0.0023 0.45 12.8 0.4 1 21 219 239 219 240 0.95

7 12 0.055 11 8.4 3.8 1 23 328 351 328 351 0.97

8 12 0.067 14 8.2 0.6 1 20 359 378 359 380 0.91

9 12 6.5 1.3e+03 1.9 5.0 2 21 388 407 387 409 0.93

10 12 0.00028 0.057 15.6 5.2 1 23 412 435 412 435 0.94

11 12 0.94 1.9e+02 4.6 2.5 1 23 440 462 440 462 0.88

12 12 0.039 7.9 8.9 4.4 1 23 468 491 468 491 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.011	2.2	10.6	2.8	2	23	69	90	68	90	0.96
2	12	5.3e-05	0.011	18.0	4.2	1	23	96	119	96	119	0.97
3	12	0.0015	0.31	13.4	1.8	2	23	131	152	130	152	0.97
4	12	0.13	25	7.3	9.4	1	23	161	183	161	183	0.97
5	12	0.11	23	7.5	1.9	1	23	188	211	188	211	0.96
6	12	0.0023	0.45	12.8	0.4	1	21	219	239	219	240	0.95
7	12	0.055	11	8.4	3.8	1	23	328	351	328	351	0.97
8	12	0.067	14	8.2	0.6	1	20	359	378	359	380	0.91
9	12	6.5	1.3e+03	1.9	5.0	2	21	388	407	387	409	0.93
10	12	0.00028	0.057	15.6	5.2	1	23	412	435	412	435	0.94
11	12	0.94	1.9e+02	4.6	2.5	1	23	440	462	440	462	0.88
12	12	0.039	7.9	8.9	4.4	1	23	468	491	468	491	0.98

Sequence Information

Coding Sequence: ATGTCAGAGAAGACATCAGAAAATGAGTTATCATCAGATTCTCCGATGGAAGGTGAAGAAAATCAAAGGGAAGAAATGATGGATATGTTCGCGAGTGTTTGGGTGAAAGTAGAAGTTGGAGACGATGCTGGTGACAGTGAAACAGATACAAAAACatcTACCTCAATGCCCAGCCAGAAAActtccaaacaaaaaaagattctcAAATGCGATACCTGTGATTACACAACTCCTCACAATAACTGTTTGAAGTTGCACATTCTTGGACATACTGGGGAAAAGCCACATTCCTGTACAATATGCAATTTTACTACAAGGTCAAACACATCTCTTCGACGTCACATGATGACCCAACATCAAACAGAAACGGGTGCTGACCTAGAAACTTTGAAATGTGACCAATGCGAGTACACCACCATATTCAAGTGGAATTTGAACTCCCACAAACGTAAACACGGAACAAAAGCAAAAGAGAAGAAATTCAAATGCATTCATTGCGATTACGTAACAGCTTACAAACACCATTTTCAGAAGCACACCAAAACACACAAGAATACCGTTTTCAAATGTGATAAATGCCCTTTTCAAACGAAATTCGAAGGCCATATAAGCCGACATTTAGCTAAAATACACAATGAAGTTACTGAGACAGCTTACAGATGCGACTATTGCGACTTTTCTACGATTACTAAATGGCGTTTGACCGTTCATTTACAGAGGTTTAAACAAGACAAAGTATTAAAATGTTCCCACTGCGACTTTGAAACAGAATACAAGTGTGAAAGTAAACGGCATAAACTTGAGCATTACAGCGAGATCCATAAAACAAAGAAAGCAGAAGAAATTCTTAAGTGGAACGATTGTGAAGATATGCTTAAAAAACGTAGGAAAACGAATGATGACCAATCTTATGCGATTGACGAAGACTGCGTTGATTGGAAGAATATACCAGTAACAGAGACTGACGATATTGATAAACCTTTCCAATGCAACTTCTGTAGTTACACTTCCCGTTTCAAAGCTTCTGTGCAACGCCATTTTCAAAGACAACACACTGGAAGCCAAAACCGACCTTATAAATGTGTTAACTGCGATTTCTCTACGAAAACTAAAGATCAGATAGCTTTACATAATAAAAGAAGTAAATCTTACATACCTTTAGAATGTGCAGAGTGTACGTTTTCAACTACATTCAAATGTCAGTTAGTTATGCATCAGAAATGCCATTATTCATTTAAATGTAATATATGTGAACATACATGTAGAAATAAGTATGATTTACAAAGACATTTCTCTATTGCGCACTCGGGAGAACTGTTCAAATGTCAGTTCTGTGATTATAAGGCACCAAGGAAAGATAGCTTGTTGTGCCATGAAACTATACATACAGGCAATAAACCTTTTAAGTGTTTTCACTGCAGTTACACTTCTGTACGGAAATCTTTGATCGACCTTCATATGAAACGATATCATAGTGAAGTAAAAGCAAATGTAACTGTCGTCAGTGATGCTAAGATTCAGTCGTTAAGAACTGTCGATGAAAAAGCAAATGAAAGTAATTTAAGTGGCTTCAAAGATCTATTGCCTGATTGA
Protein Sequence: MSEKTSENELSSDSPMEGEENQREEMMDMFASVWVKVEVGDDAGDSETDTKTSTSMPSQKTSKQKKILKCDTCDYTTPHNNCLKLHILGHTGEKPHSCTICNFTTRSNTSLRRHMMTQHQTETGADLETLKCDQCEYTTIFKWNLNSHKRKHGTKAKEKKFKCIHCDYVTAYKHHFQKHTKTHKNTVFKCDKCPFQTKFEGHISRHLAKIHNEVTETAYRCDYCDFSTITKWRLTVHLQRFKQDKVLKCSHCDFETEYKCESKRHKLEHYSEIHKTKKAEEILKWNDCEDMLKKRRKTNDDQSYAIDEDCVDWKNIPVTETDDIDKPFQCNFCSYTSRFKASVQRHFQRQHTGSQNRPYKCVNCDFSTKTKDQIALHNKRSKSYIPLECAECTFSTTFKCQLVMHQKCHYSFKCNICEHTCRNKYDLQRHFSIAHSGELFKCQFCDYKAPRKDSLLCHETIHTGNKPFKCFHCSYTSVRKSLIDLHMKRYHSEVKANVTVVSDAKIQSLRTVDEKANESNLSGFKDLLPD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00036228;
90% Identity: iTF_00036228;
80% Identity: -