Agen013953.2
Basic Information
- Insect
- Agriphila geniculea
- Gene Symbol
- -
- Assembly
- GCA_943789515.1
- Location
- CALSUL010000166.1:90447-108242[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0034 0.68 12.3 1.0 1 20 296 315 296 319 0.95 2 13 0.013 2.7 10.4 3.0 3 23 328 348 326 348 0.96 3 13 0.00011 0.022 17.0 8.0 2 23 380 401 380 401 0.98 4 13 2.2 4.5e+02 3.4 0.1 1 10 405 414 405 415 0.91 5 13 1.6 3.3e+02 3.8 0.1 1 10 502 511 491 517 0.92 6 13 1.6 3.3e+02 3.8 0.1 1 10 599 608 588 614 0.92 7 13 1.6 3.3e+02 3.8 0.1 1 10 696 705 685 711 0.92 8 13 1.6 3.2e+02 3.8 0.0 1 10 742 751 742 757 0.88 9 13 0.0015 0.3 13.4 0.2 1 23 847 870 847 870 0.94 10 13 0.023 4.7 9.6 0.8 2 20 886 904 885 906 0.93 11 13 1.8 3.6e+02 3.7 5.5 2 23 973 995 972 995 0.89 12 13 1.5e-07 3.1e-05 25.9 1.2 1 23 1034 1056 1034 1056 0.99 13 13 3.3e-05 0.0066 18.6 1.2 3 23 1064 1085 1062 1085 0.97
Sequence Information
- Coding Sequence
- ATGATTAACGTCAATGATGGTCTGCCCTGCTGTCTCTGTTACCACTGTGCAGCACTGTTGCACAAGTTCCACAAATTCAAAGAGAAATCAAACTACAGTCAAACAAAACTCAAAAATCTTCTTCGTAGTGGACCAGTACGTATGATACAAGTGTACCTATTAGAGTTGACACTTGGAAGTATTTTACCCCCAGTTTCTGAGATTACCCACAAATCTAtcaacaacataatattaaaaaatgaaaCTGTTTATAAATGTGGTACACTacaaattttaacaataaatgatagggtgaaaactttaaaaaagaaGCATTTCACAATTGATGATATTAAAGACGACACTGATATAAAAGCGGAAGTTATAGCACTTAACTTCTGTGATGACTTCTACTCTGATGATGAAGAGACTTATGATGATCCTGAAAATGACCCAGTTGCAGAAGATGAGGTCAAGGTGATACATAAACATGTTTCGAACAAAGAAAAATCTACAGAGTTTCCTGAATTTGAATTAGTCCAAGCAAATACTGTAGATCATCCTAAAGATGAGGTTAAAAGCATAAAGCCTTTGAAACCTAGAAAAAAACTTCAGAAGAAAGAAAATGTTTCTTCTTCTGAAGAAGAATATGAAGAAGTAAAATCTAAAAGAACACTACGTCATAAAAGCGAAAATGTTTCTTCTGAAGATGAATATGTACCTAAAAGAAAATTGATAAGCAAACCTCCTGAAACGAAGAAGTATAAATTCAAATCCAAAGATGGTAAATTGAAGGCATTAGCTTTTCTTAATTCTGGTAATTGGAAAAAATCTAACTTGAGTGAGGAAGAGGCTTTGAAGGAATTCGAAGCCAGGGCCCAGGACCGGAAGTATTTGTCTGCTGCTTTTAAGTGCACTGATTGCTTTAGAGGATTTTCAAAGAAGGTTATGTTAGATAGGCATTTACCACTGAGACATGGAGAGGCAGCTGGTCCTCTAGCGTGTCGCTTCTGCAAAATGAGATTCAAGTCATCATACTTTGTTAATAAGCATATGAAACAGCATTTTACCAAATATGAATGCTTACGATGCAATCTGGTCTGCAACTTGGAgaATTCCGCATTATTTCACGAAGAGTATCATAATGGTGTTCTCAGAAAATGTACACATTGCGACAAATCTTTCAGACACCTGTCCACATTCTACACGCACCTGCGCACGCACCGCAGCAAGCACATGTGCTCGCTCTGCGGGGAGTCGTTCGATATTATACCTATGCTCTACTGTTGTCCACAGACACCTGTCCACATTCTACACGCACCGCAGCAAGCACATGTGCTCGCTCTGCGGGGAGTCGTTCGATATTATATCTATGCTCTACTGTTGTCCACAGACACCTGTCCACATTCTACACGCACCGCAGCAAGCACATGTGCTCGCTCTGCGGGGAGTCGTTCGATATTATATCTATGCTCTACTGTTGTCCACAGACACCTGTCCACATTCTACACGCACCGCAGCAAGCACATGTGCTCGCTCTGCGGGGAGTCGTTCGATATTATATCTATGCTCTACTGTTGTCCACAGACACCTGTCCACATTCTACACGCACCGCAGCAAGCACATGTGCTCGCTCTGCGGGGAGTCGTTCGATATTATATCTATGCTCTACTGTTGTCCACAGACACCTGTCCACATTCTACACGCACCGCAGCAAGCACATGTGCTCGCTCTGCGGGGAGTCGTTCGATATTATATCTATGCTCTACTGTTGTCCACAGACACCTGTCCACATTCTACACGCACCGCAGCAAGCACATGTGCTCGCTCTGCGGGGAGTCGTTCGATATTATATCTATGCTCTACTGTTGTCCACAGACACCTGTCCACATTCTACACGCACCGCAGCAAGCACATGTGCTCGCTCTGCGGGGAGTCGTTCGATATTATATCTATGCTCTACTGTTGTCCACAGACACCTGTCCACATTCTACACGCACCGCAGCAAGCACATGTGCTCGCTCTGCGGGGAGTCGTTCGATATTATATCTATGCTCTACTGTTGTCCACAGACACCTGTCCACATTCTACACGCACCGCAGCAAGCACATGTGCTCGCTCTGCGGGGAGTCGTTCGATATTATATCTATGCTCTACTGTTGTCCACAGACACCTGTCCACATTCTACACGCACCTGCGCACTCACCGCAACACCTGTCCACATTCTACACGCACCGCAGCAAGCACATGTGCTCGCTCTGCGGGGAGTCGTTCGATATTATATCTATGCTCTACTGTTGTCCACAGACACCTGTCCACATTCTACACGCACCGCAGCAAGCACATGTGCTCGCTCTGCGGGGAGTCGTTCGATATTATATCTATGCTCTACTGTTGTCCACAGACACCTGTCCACATTCTACACGCACCTGCGCACGCACCGCAGTAAGCACATGTGCTCGCTCTGCGGGGAGTCGTTCGATATTATATCTATGCTCTACTGTTGTCCACAGACACCTGTCCACATTCTACACGCACCTGCGCACGCACCGCAGCAAGCACATGTGCTCGCTGTGTGGAGAATCATTTGTCAGTCCGCTCGGGTTACGACTGCACACGAAGGCAAAGCATGCTGTTGAAACTgaAAACCAAGAAACTACTGTAGAAGAGAGCACATACTGTGAAACATGTCAGATCAAATTCGAAACTAAAGAGGCGTACAACAAGCATTTGTTGCATTCAGCGTTACATTCCGTTGCGTTGCATGaCAATAAATTAACTGATGATGAGGCTTCAGATTACATTGATGATGAAAAGGAAGAATATGATGAGaAAACGGAACCGCTCGTTAAGAGGAAATCGAGAGTGGAGAAAACCTTATCAGCTGCTAGGAAATGTTTAGGACATTCACGAAGAGCGACTGTTAAAAAACCCACCACTTGCTATCAATGCGGCGAACATTTCGACACGCAATCGGCGTGCATGAAACACCACTTGGCCAAGCACCCGGGCACTTCGTTCTTCTCCGAGAAGGAGAGAATTATCTGTGAGGTCTGCGGTGCGTCTCTTGCGCCCGGAAGCGTGGCAGCCCATCTGAACCAGCACACTCGAAGCAAAATGTACACGTGCGACACGTGCGGGAGATCGTTCACTACTAGCACCATGCTACGGAACCATATGGCGACACACACTGGAGAGAAGAGATATGGCTGCAGCCTGTGCGACAAGCGGTTCACTCAAAACGGGAGTCTCAGCCTTCACTACAGGACATTCCATTTGAAACAACCTTATCCTAAGAGaGTTAGAAGAAAGAAGATTGATAATGATGGCGATATTGTTAGTTTGAGTGGGAAAAAAATGAACAGGGTGTTAACAGCAGAATTTAATTGA
- Protein Sequence
- MINVNDGLPCCLCYHCAALLHKFHKFKEKSNYSQTKLKNLLRSGPVRMIQVYLLELTLGSILPPVSEITHKSINNIILKNETVYKCGTLQILTINDRVKTLKKKHFTIDDIKDDTDIKAEVIALNFCDDFYSDDEETYDDPENDPVAEDEVKVIHKHVSNKEKSTEFPEFELVQANTVDHPKDEVKSIKPLKPRKKLQKKENVSSSEEEYEEVKSKRTLRHKSENVSSEDEYVPKRKLISKPPETKKYKFKSKDGKLKALAFLNSGNWKKSNLSEEEALKEFEARAQDRKYLSAAFKCTDCFRGFSKKVMLDRHLPLRHGEAAGPLACRFCKMRFKSSYFVNKHMKQHFTKYECLRCNLVCNLENSALFHEEYHNGVLRKCTHCDKSFRHLSTFYTHLRTHRSKHMCSLCGESFDIIPMLYCCPQTPVHILHAPQQAHVLALRGVVRYYIYALLLSTDTCPHSTRTAASTCARSAGSRSILYLCSTVVHRHLSTFYTHRSKHMCSLCGESFDIISMLYCCPQTPVHILHAPQQAHVLALRGVVRYYIYALLLSTDTCPHSTRTAASTCARSAGSRSILYLCSTVVHRHLSTFYTHRSKHMCSLCGESFDIISMLYCCPQTPVHILHAPQQAHVLALRGVVRYYIYALLLSTDTCPHSTRTAASTCARSAGSRSILYLCSTVVHRHLSTFYTHRSKHMCSLCGESFDIISMLYCCPQTPVHILHAPAHSPQHLSTFYTHRSKHMCSLCGESFDIISMLYCCPQTPVHILHAPQQAHVLALRGVVRYYIYALLLSTDTCPHSTRTCARTAVSTCARSAGSRSILYLCSTVVHRHLSTFYTHLRTHRSKHMCSLCGESFVSPLGLRLHTKAKHAVETENQETTVEESTYCETCQIKFETKEAYNKHLLHSALHSVALHDNKLTDDEASDYIDDEKEEYDEKTEPLVKRKSRVEKTLSAARKCLGHSRRATVKKPTTCYQCGEHFDTQSACMKHHLAKHPGTSFFSEKERIICEVCGASLAPGSVAAHLNQHTRSKMYTCDTCGRSFTTSTMLRNHMATHTGEKRYGCSLCDKRFTQNGSLSLHYRTFHLKQPYPKRVRRKKIDNDGDIVSLSGKKMNRVLTAEFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -