Agen041116.1
Basic Information
- Insect
- Agriphila geniculea
- Gene Symbol
- -
- Assembly
- GCA_943789515.1
- Location
- CALSUL010000577.1:406966-427716[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.017 3.5 10.0 3.3 1 23 208 230 208 230 0.96 2 11 0.0055 1.1 11.6 1.1 1 23 237 260 237 260 0.91 3 11 0.17 34 6.9 3.8 1 21 264 284 264 286 0.94 4 11 0.0041 0.82 12.0 0.1 3 23 293 314 292 314 0.95 5 11 0.00022 0.044 16.0 0.3 3 23 321 342 320 342 0.96 6 11 0.0031 0.62 12.4 0.2 1 22 356 377 356 381 0.93 7 11 0.044 8.8 8.8 0.3 2 23 398 420 397 420 0.96 8 11 0.012 2.4 10.5 0.7 2 23 472 493 471 493 0.96 9 11 0.00075 0.15 14.3 0.0 3 23 500 520 499 520 0.98 10 11 3e-05 0.0061 18.7 1.2 1 20 530 549 530 551 0.94 11 11 2.1e-05 0.0042 19.2 1.1 1 21 585 605 585 606 0.94
Sequence Information
- Coding Sequence
- ATGTACATAAAGCAACCGCCAACTCCTGCCGAAAGATTCGGCACGCGCTGTACGatcACGAAACGTCTAGTTAAAAAACAGAATAGGCAACATCTGAAACTGGTATCACCATTGAGCTGCCAATATGTTCCATCGCACTTATTTGAATACACATACGACGAAGATCTATATATCTCTAAtttaaacaacataattaataaaGACAATAATACACAACATGATAGTAATGATGAAACCACTTATATTGATGATAAAGATGAATTTGGAAAGAACCAAGAATCTGATGCTATTTACTTAAATATTGACAGTAATGTTATTGAAGAACAATTTGATGATGATTACTTATGtgatgaaacagtttttttagaaGAAAATAACTATACAGAGCCAACAAAAGACTTAAGTGAAACTGGATTTATGGATGATTCAGAAACACAATCTTCTGATATTCATTCAAAAGGACATTCTATAAAATCTAATATCAAATATGCTAAAATGGATATGATTAGCGACACCAATATGCAAAAGTTTTACAATATTGTTGAGATGTCAttGCAGGAACAAAAAGAGGAATATGAGAAGGCAATTGCAAAACAAAGTGAAAAGACTGTAGATGTTGAGTACAAATGTGATATTTGTCACAAAATCTTCTTCACATTAGCTGCATGCCAATCTCACATCATTTATCATGATTTGAAACGTGGTGCGTTCGAGTGCCCCGTTTGTAAGATACGCTTTAAGACCGACAACATGCTGAGTTCGCACACACACGACGTTCACCAAAGGATGTTCCATTGCAAATATTGTCCGAGGACTCTCAACAATGCTACCGCAGCCCGCAACCACCTGCGCTGTCACGGCGGGCACCGCTCCGCGTGCGCGCTGTGCCCGTACCGCACGGCGCGCGCCTCCACGCTCACCAAGCACGTGCTGCGCGCGCACGCCGCGCACACGCGAGCGTGCACGACGTGCGGACACGCGTTCGTCACTGAGGGGGGGCTTAAGAGACACACTGCTACTGCGCACCGTGATGTCGATGAAaagagcGATGGTTCGGATGAGGTGTATCGGTGCGAAGAATGTGATATCAACTTCAAATCAGAGGGCGCCAAACGTGTGCACATCCTCACGTCGCAGTTGCATATTAAAAAAGAGAATGCGCAGTCAGTACCAGACCGTCGCTTAGAGACGACCTGCCTACGTTGCGGGGAAGAGTTCCCTTCGGCGGAGCTCAAGCACGCGCACGTGCGGCGCGCGCATCGCCGCGGCACAGCCGTCAAGCACGGGGAAGACGGCTACCCGAAACTGTGCGACTATTGCGAGTTAGTGTTGCACAGCCGCTGGGAGCACTGGACGCATGTTCAGAAGCGGCACCGCACCAAGAGGAGCGCCTACCGCCCCATCGTCAACGTCGTCTGCGACAAGTGCGGGAAGGGATGCGCGAGTGTGACAAGGCTCCGGCAACACGCGCTGCGCCACAGCCGGCCGGCGGTGGCGTGCCCGCGCTGCCCGCGCGCCTTCTACGACCAGGCGGCGGTGGCGCGCCACCTGACGACCCACGACGcggccgccggcgccgcgcgcGCGCACCGCTGCGCCACCTGCGGCCGCGCCTTCACCCACAGGACCAACCTGATGCGCCACGCCAAGGACCAACCTGATGCGCCACGCCAAGGTCACTTGCTCATTATTATACTACACGCGCTGCGCCACCTGACGACCCACGACGtggccgccggcgccgcgcgcGCGCACCGCTGCGCCACCTGCGGCCGCGCCTTCACCCACAGGACCAACCTGATGCGCCACGCCAAGGTCACTTGCTCATTATTATACTACACGCGCTGCGCCACCTGA
- Protein Sequence
- MYIKQPPTPAERFGTRCTITKRLVKKQNRQHLKLVSPLSCQYVPSHLFEYTYDEDLYISNLNNIINKDNNTQHDSNDETTYIDDKDEFGKNQESDAIYLNIDSNVIEEQFDDDYLCDETVFLEENNYTEPTKDLSETGFMDDSETQSSDIHSKGHSIKSNIKYAKMDMISDTNMQKFYNIVEMSLQEQKEEYEKAIAKQSEKTVDVEYKCDICHKIFFTLAACQSHIIYHDLKRGAFECPVCKIRFKTDNMLSSHTHDVHQRMFHCKYCPRTLNNATAARNHLRCHGGHRSACALCPYRTARASTLTKHVLRAHAAHTRACTTCGHAFVTEGGLKRHTATAHRDVDEKSDGSDEVYRCEECDINFKSEGAKRVHILTSQLHIKKENAQSVPDRRLETTCLRCGEEFPSAELKHAHVRRAHRRGTAVKHGEDGYPKLCDYCELVLHSRWEHWTHVQKRHRTKRSAYRPIVNVVCDKCGKGCASVTRLRQHALRHSRPAVACPRCPRAFYDQAAVARHLTTHDAAAGAARAHRCATCGRAFTHRTNLMRHAKDQPDAPRQGHLLIIILHALRHLTTHDVAAGAARAHRCATCGRAFTHRTNLMRHAKVTCSLLYYTRCAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -