Basic Information

Insect: Agriphila geniculea
Gene Symbol: -
Assembly: GCA_943789515.1
Location: CALSUL010000116.1:217563-223120[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.022 4.4 9.7 4.3 2 23 36 57 35 57 0.96

2 15 0.00068 0.14 14.5 2.2 1 23 95 118 95 118 0.98

3 15 0.17 34 6.9 3.9 2 23 122 143 121 143 0.96

4 15 9.3 1.9e+03 1.4 0.8 1 23 152 174 152 174 0.82

5 15 0.018 3.7 9.9 0.1 1 23 179 201 179 201 0.97

6 15 1.8 3.7e+02 3.7 0.5 3 23 231 252 230 252 0.91

7 15 0.0021 0.42 12.9 0.9 1 23 259 281 259 281 0.92

8 15 7.6e-06 0.0015 20.6 0.6 1 23 287 310 287 310 0.95

9 15 0.31 62 6.1 1.7 1 23 322 345 322 345 0.94

10 15 0.013 2.6 10.4 0.2 2 23 351 374 350 374 0.93

11 15 0.86 1.7e+02 4.7 1.8 3 23 383 403 383 403 0.97

12 15 0.019 3.8 9.9 0.3 1 20 408 427 408 430 0.92

13 15 0.013 2.6 10.5 0.8 1 23 436 458 436 458 0.95

14 15 2.9e-05 0.0059 18.8 1.2 1 23 464 486 464 486 0.97

15 15 2.3e-05 0.0047 19.1 1.3 2 23 493 515 492 515 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.022	4.4	9.7	4.3	2	23	36	57	35	57	0.96
2	15	0.00068	0.14	14.5	2.2	1	23	95	118	95	118	0.98
3	15	0.17	34	6.9	3.9	2	23	122	143	121	143	0.96
4	15	9.3	1.9e+03	1.4	0.8	1	23	152	174	152	174	0.82
5	15	0.018	3.7	9.9	0.1	1	23	179	201	179	201	0.97
6	15	1.8	3.7e+02	3.7	0.5	3	23	231	252	230	252	0.91
7	15	0.0021	0.42	12.9	0.9	1	23	259	281	259	281	0.92
8	15	7.6e-06	0.0015	20.6	0.6	1	23	287	310	287	310	0.95
9	15	0.31	62	6.1	1.7	1	23	322	345	322	345	0.94
10	15	0.013	2.6	10.4	0.2	2	23	351	374	350	374	0.93
11	15	0.86	1.7e+02	4.7	1.8	3	23	383	403	383	403	0.97
12	15	0.019	3.8	9.9	0.3	1	20	408	427	408	430	0.92
13	15	0.013	2.6	10.5	0.8	1	23	436	458	436	458	0.95
14	15	2.9e-05	0.0059	18.8	1.2	1	23	464	486	464	486	0.97
15	15	2.3e-05	0.0047	19.1	1.3	2	23	493	515	492	515	0.96

Sequence Information

Coding Sequence: ATGGCTACACTCTCAAAGTGCGTCCCCATAGGGGCCGACAACATTCTAGAACAATTCATAAATCAAAAACCAAACCCCACTACTATCGATAAAGTAGGAGGCATTTACTGCCACATTTGCCATCTAACCTTTGGAAGTAAAAAAGATTATGACAGTCATTACAAGCAACACGGCACAGGCAGCGCAGACGTCATATACACATGTGTGGTTTGTCACAAAGAGATAGTTGGTTACCCGAGCTTTCGTGGGCACTGTTACATAGCCCATGTTGTCAAAGATAAGTTCAAatGTGGACAATGCGACAAAATGTTTCCAAAACAATGTATCCTACAAACACACATTAAAACTGTACATAAAATCAGTACATGTTCAATTTGCAATAAACAATTCAAATGTCAAAAAGAATTTTTCATGCATGAAATGGTTCACAAAAATACTGTAAATGGCCCACCTTACGAATGTCAGACTTGTGGGGATCCAATAGAGACGTCAGATGATTGTGAACACCATATTGAAGACCACTGTACCATGTTCTACACTTGTCCTATCTGCAATGAGGACAGTACCAGCTTAAAAGATGCTGCGAATCATTTGACGAAACATTTTGATGAAGTACTTACAGAAAGAGATGAATCAGCAACAATAGGAATGCCTGGCGACTCTTGGATAGAACTTGTCGGTGGTATACTGTGTAATTACTGTGAGAGCATTTACAATACCAAACAAGACTTTGATAGTCACTTTTTATTAGACCATGCAGATAAAGAAATTAGTTATGCTTGCAATATTTGTGGAAAAGAATTTGAGAAATACATGAACCTCGGTCACCACGGCTATAACCATGCCGCTAAAGATAAATTTAAGTGTGAGGATTGCTTCAAAACTTTCAATCGTTTATCTTTGCTAGTGATACACATGGAAGCATATCATTTTCACACTAAACCCAAAAACGCACAGTACCCATACACATGTCGCCAGTGCAAAAAAGGGTTTTTAACCGATCGGCGCCTCAAGGAACATTATCGCGGcgttcataatatttattatagccAGTGCCCGGAGCCAGGTTGTTCAAAAACTTTTGACACTCCCAAAGATCTGATGTTCCATGTGAAAGAACACAATTCTGTCCACAATAATAATTGGTGTAGGCAATGTGGCCTCCGATTCTACAGCCTGGCAGCCTGTGAGAAACACCTACAATACCATAGGAAGAAAAGTTTTTTATGCCCTATCTGCAACAGAAATTACGGAGAGAAATATCTCCTATTAAAACATTTGCCACAACACTTCTCGTCAGTGCTACATGTTTGCAAAGTGTGCGGAAAGATATATAACAGCGGGAATCGGCTCATGGAGCATAGCAAAGTCCACAGTGAAATCAAGCCTCACACTTGCTCAATTTGCGGAAAGGGCTTCGCTAAAACCTACGCGTTGCAACAACACAAGAATATTCATTTGAGTTTCAAGCCTATTAAATGCAGTTTTTGTTCAAAAACCTTTGCCAATTACCCTAACTTAAGGAAGCATGAACGTAGAATACATTCTAATAAAACAAAGTTAAACAAAAACGCTATTCAGAATAATTCAGATAAGGGTAAAGATTTGAATGAAACACAAATGAACGATGAAATGTCTGATCAAATGATTCATGAAACTAACAATTTCCAAGAAAACTCTATCATTGATTTACAAGCTAACACATCTGCCGACATGAGCACTACTACACAAAGCTTTGAGGAAACTAGTGAGACGGACAATCAATGGTCATTTGACGGAGTGGATCCCGTAGTTCTGGAAATATTGGAACAGCAATTGCAGAATTCTCAGGAGGTTAATGTTGAACCAATTACTAATATTGATGAGTTTCAAAAAGATCTTTGGTCAAGCTCAACTATCCAACTAGATTCGTGCGAAGCCCCCGTACCGTACGAGTACGGGCCGGAGTTCGTGTCCGGGGCGGAGGCgtcgggcgcgggcgcgggcgtcATCCCGCTGGGCGACCCGCCGCTGCCCCACATCGACCCCCGCCTCACCCTCCTCCAACCCCCCAACCCCCCGATCCCCGTCATCCCCACTCCGATCCCCTCCCCTAAATGGGAACCTCCCATCCTCACGAAGCTCGACTACTACGACTTCGACAGCTCAGTGTGGGATcaaattacaatttag
Protein Sequence: MATLSKCVPIGADNILEQFINQKPNPTTIDKVGGIYCHICHLTFGSKKDYDSHYKQHGTGSADVIYTCVVCHKEIVGYPSFRGHCYIAHVVKDKFKCGQCDKMFPKQCILQTHIKTVHKISTCSICNKQFKCQKEFFMHEMVHKNTVNGPPYECQTCGDPIETSDDCEHHIEDHCTMFYTCPICNEDSTSLKDAANHLTKHFDEVLTERDESATIGMPGDSWIELVGGILCNYCESIYNTKQDFDSHFLLDHADKEISYACNICGKEFEKYMNLGHHGYNHAAKDKFKCEDCFKTFNRLSLLVIHMEAYHFHTKPKNAQYPYTCRQCKKGFLTDRRLKEHYRGVHNIYYSQCPEPGCSKTFDTPKDLMFHVKEHNSVHNNNWCRQCGLRFYSLAACEKHLQYHRKKSFLCPICNRNYGEKYLLLKHLPQHFSSVLHVCKVCGKIYNSGNRLMEHSKVHSEIKPHTCSICGKGFAKTYALQQHKNIHLSFKPIKCSFCSKTFANYPNLRKHERRIHSNKTKLNKNAIQNNSDKGKDLNETQMNDEMSDQMIHETNNFQENSIIDLQANTSADMSTTTQSFEETSETDNQWSFDGVDPVVLEILEQQLQNSQEVNVEPITNIDEFQKDLWSSSTIQLDSCEAPVPYEYGPEFVSGAEASGAGAGVIPLGDPPLPHIDPRLTLLQPPNPPIPVIPTPIPSPKWEPPILTKLDYYDFDSSVWDQITI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00284889;
90% Identity: iTF_00036046; iTF_00284889;
80% Identity: -