Agen043006.1
Basic Information
- Insect
- Agriphila geniculea
- Gene Symbol
- -
- Assembly
- GCA_943789515.1
- Location
- CALSUL010000610.1:660346-676654[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.4 6.9e+02 2.8 0.1 5 23 175 193 174 193 0.90 2 10 0.0041 0.82 12.0 1.1 2 23 226 248 225 248 0.89 3 10 4.6e-05 0.0093 18.1 0.6 2 23 257 279 256 279 0.94 4 10 0.00037 0.075 15.3 0.4 1 20 284 303 284 304 0.96 5 10 0.59 1.2e+02 5.2 4.1 1 23 312 335 312 335 0.94 6 10 0.036 7.4 9.0 0.6 3 21 342 360 340 361 0.89 7 10 0.00024 0.048 15.9 0.3 2 23 366 387 365 387 0.97 8 10 4.8e-05 0.0096 18.1 0.5 1 23 393 415 393 415 0.99 9 10 0.00012 0.024 16.8 1.9 2 23 422 443 421 443 0.98 10 10 1.2e-06 0.00024 23.1 0.7 1 23 449 471 449 471 0.98
Sequence Information
- Coding Sequence
- ATGTGGGTGCATCGCATTCCAATGCTGCTTGGAGCATTTGGCACCAAGTATATCAAGAAGACAGTTTACTCGgTCACGTTAGATGATAGCCTGCCAAAATATTGTTGCCAAAGTTGTGTTGGTGCTGTTAATTTCTTTGTACAGTTCAGAAGCAAATGTACAGAAAATGAGAATACTCTGCGAGCTGCCATTGAGAAAACAAAGTTAGAGAAAGATGCATCACAACTTATCAATAAACAAGCTACAAATGACACAAAACTAGATACAATAAAAACAGAAGAATACTGTGATAGTATTGGAGAAGAATGTGATGAggagttttttaattattttgaagatGATGATTGTAGTGTTAAAGATGAGGAAATTGGAACTGAAACTAATACAAAAAAAGATAGTGATGACAAGCTGATTACAGAAGTTGGTACAACAAAATTTGTGAAGAATGAGCAAAAAACCAGAAAGGGAAGGTCCAAAGTTAAATCAACTGAAGCTATTGATAAGACACAGAAAGTTGCAGgaatatgtacaaaaaaaggttttgatGAAAACACTCTGAAAACTCATTTAGAGAATCACAAAACAAGCAAGCAATGTGAGTTATGTGAAGAGAAAGCGTGGTCATGGCCTCAGCTCTTTGGGCATCGAGTACAACATTTACCAAAACCACAACAGAAGTGCCATTTGTGTGGTCGAGTCTATACATCATCGGCCTATTTAGAATTTCATTACTTGAATTTACACAATGATGGGCAAGAAAAGGTCTTAAAATGTAATAGATGCTGGCGCATCTTTACTACTGCAAAAAATTTGAGCAAACACTTACAGGCTGTGCATTCTGATTTGAAATATACGTGCGACTATTGTTCCAAATCatttaggggaaaaaatgttttgctgaagCATATTGTTTGTCACAGTGAACAGAAGGCTTTTAAGTGTGACTTGTGTCCATTTGCCTGTAAATTTTCCAATGGGCTAAGTattcaCAAATTACATAGACACAACCCAACTAAAGTAATTTGTAAGCAGTGTGGTAGACCATTTATAAGTCAAGAAAAAATGGACCTACATACTTGTAAATCAAGGAGTGTCGTCTGTCCCGTATGTGGAAAATTTGTGGCTCACAATAATAGGctACTAAAACACATGGAGTCGCATAGTACTGTTAGCAAATACAAGTGCGACCGATGTACGGCCGTTTACAGATCATCTCAAGCCCTGAAGGCGCACATCAACAAGCACGACGGCATTCGCGACAAGAAGTGCGAGTTTTGTCCGGCGACATTCTTTCATTCCAGTGCACTCGCCAAACACAGGCGTATACACACAGGTGAAAAGCCTTACGTCTGTGAAGTCTGCAGTAAAGGTTTTACAGGGAATCATAATTTGAAGGTCCACATGCAAATTCATGgtcaatttattataaataggaAAAACAAAACGGAAATTGGAGGAACTTCACTGGACGTGGAGCGGTTGTCATCTGTGACTCTAGAGCTAGAACCGACAGTGTTGAATTTCTTTAGGCTACCTGTTGCGAGAGACCCGTTGGAGGACGAACAGTGGGGAGGCAATAACGGCACCTTTTCTTGCAAGTCTCTAATTGAACCTGTGGACCTATGTGTACAAGTGCTGCTCCCGGGTTCTGGCGGAACGGATTCTGGGCACCCTCCCATGTGA
- Protein Sequence
- MWVHRIPMLLGAFGTKYIKKTVYSVTLDDSLPKYCCQSCVGAVNFFVQFRSKCTENENTLRAAIEKTKLEKDASQLINKQATNDTKLDTIKTEEYCDSIGEECDEEFFNYFEDDDCSVKDEEIGTETNTKKDSDDKLITEVGTTKFVKNEQKTRKGRSKVKSTEAIDKTQKVAGICTKKGFDENTLKTHLENHKTSKQCELCEEKAWSWPQLFGHRVQHLPKPQQKCHLCGRVYTSSAYLEFHYLNLHNDGQEKVLKCNRCWRIFTTAKNLSKHLQAVHSDLKYTCDYCSKSFRGKNVLLKHIVCHSEQKAFKCDLCPFACKFSNGLSIHKLHRHNPTKVICKQCGRPFISQEKMDLHTCKSRSVVCPVCGKFVAHNNRLLKHMESHSTVSKYKCDRCTAVYRSSQALKAHINKHDGIRDKKCEFCPATFFHSSALAKHRRIHTGEKPYVCEVCSKGFTGNHNLKVHMQIHGQFIINRKNKTEIGGTSLDVERLSSVTLELEPTVLNFFRLPVARDPLEDEQWGGNNGTFSCKSLIEPVDLCVQVLLPGSGGTDSGHPPM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -