Basic Information

Insect: Agriphila geniculea
Gene Symbol: -
Assembly: GCA_943789515.1
Location: CALSUL010000910.1:135768-139758[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00025 0.05 15.8 0.7 1 23 307 330 307 330 0.92

2 12 0.0058 1.2 11.5 2.0 1 19 350 368 350 372 0.90

3 12 2.9e-05 0.0058 18.8 3.1 2 23 378 399 377 399 0.97

4 12 0.0048 0.96 11.8 1.5 1 23 403 426 403 426 0.92

5 12 0.072 15 8.1 0.1 1 23 429 451 429 451 0.93

6 12 0.00024 0.048 15.9 0.1 3 23 539 559 538 559 0.96

7 12 0.039 7.9 8.9 0.2 2 23 579 601 578 601 0.96

8 12 7.6e-07 0.00015 23.7 3.7 1 23 607 629 607 629 0.98

9 12 0.0013 0.26 13.6 1.7 2 23 635 656 634 656 0.96

10 12 0.024 4.9 9.6 4.4 2 21 663 682 662 685 0.93

11 12 4.8 9.8e+02 2.3 1.9 1 19 693 711 693 716 0.88

12 12 0.068 14 8.2 2.5 3 19 725 741 724 743 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00025	0.05	15.8	0.7	1	23	307	330	307	330	0.92
2	12	0.0058	1.2	11.5	2.0	1	19	350	368	350	372	0.90
3	12	2.9e-05	0.0058	18.8	3.1	2	23	378	399	377	399	0.97
4	12	0.0048	0.96	11.8	1.5	1	23	403	426	403	426	0.92
5	12	0.072	15	8.1	0.1	1	23	429	451	429	451	0.93
6	12	0.00024	0.048	15.9	0.1	3	23	539	559	538	559	0.96
7	12	0.039	7.9	8.9	0.2	2	23	579	601	578	601	0.96
8	12	7.6e-07	0.00015	23.7	3.7	1	23	607	629	607	629	0.98
9	12	0.0013	0.26	13.6	1.7	2	23	635	656	634	656	0.96
10	12	0.024	4.9	9.6	4.4	2	21	663	682	662	685	0.93
11	12	4.8	9.8e+02	2.3	1.9	1	19	693	711	693	716	0.88
12	12	0.068	14	8.2	2.5	3	19	725	741	724	743	0.97

Sequence Information

Coding Sequence: ATGGAAAACACAATCGTTACGTCGGACTGTGATATTTTATACCCAGCGCTAATCATACCAAAGCGCTGCACAACCCTGGAAACCAGCTGTGAACTGGCTGATAATGTGTTTATAGACTTGAACATCACTTCAGTTGACACGGAAGGTAACGAAATGTGCATTTACAACGGATTCTGTAATGTTAAGCTTATTGATAGGTACGATGTAAACATTCAGCAATTAGAAACTAATGCTGATAATGCGTCTgtgaattttattgaaaatgagGCTTTCCTGCCTGAAATTGGCAGCCAGGTAACGTGCCCCAGTTACAACCAGTCTCATGTATGGATAGACCCAGTGAGAAGCCCACATGTTTATAATTCTTACGACGCAACTGACAACCAGGGTCATTCCGTTTGTCAAACACCAGCAGCGCATATTACAGTTGAGCATCACAACACTTACATTACCCAAAATGTTTACAACTACAAGGATTCCATACAATACTCGCTGCCTGAAGATTTTGAACACAAGAAGTTTAGGAAGCTACCGGCTCCTGAAACCACTACAGTAGCCTTGCAAACTTCAGGGGATCAAGCTAATTTTTATGAGGAGGATGAGTTCGAGTGCGGCGTTTTTCTGTCGCAACTGCCTGAAGAGATTTTGAATGAGAAAGAGAGTAAAGATAGAGAGGAGAGGAAATATATCGGTTTACAGAGTGACAATGAGGCGCTGAAGCAGTTGATGTCTACGGATATTCAGTCGGTGTCGAAGCAGAGGAAGACTATTTTGTTCCTTGGTCATGACTCGCACCGAGGTCAAACCATCCAGAAAATATCAGTTAATGACCCAACTTTGGTATGTTCTGGTGGGGGAGAGGTGGACCATGAAGTTGTCATTGATGACTCAGAACAGTCCAATCCCCACCAAAAGAAATACCAATGTGATAAATGCAAGCAAATATTTGATCAAATATCGGCCTTCAAGAAACATATGGTTGGCAGTCACAGGTCTCCGAGTTCCTCCAGCTGCGATACAAGTTCCTCATCAACCAACGATATGAAGTTCATGTGCACAGAATGTGGGAAAAGCCTGAAAAATCAAGAGAAATTCGAACTGCACTGCATGGGCCACGGTGACCCAGAACTAGAATGCAACATGTGCCATAAAGTGTTCGCTTCAAAATTCACCTTACGCACTCATCGTAAGATTCACAACAGGTCATACGTTTGCTCCTACTGTTACAAATCCTACTCCAGCTTCGAACTGTTACGAGGACATTCAGCGAAAAAGCATTTCGCgtttttgtgtgaaaattgCGACTTTGTTACGGAAAATTACGATGAATTGAATTTACATGAAGATATTCATAAAATTCAGCCGTATAGTAAAGATGTAGTACTGAATGATGTGTTGACGGAAGCCATTATGGAAGAAGATGTGATGAGTGACACAGATATCATCACGCCTTCGCCCGAAGGTCACGGCATGAAGATCGAGAGTGAGCCTTCGTGTTCTTCCCAACAAGAGGAAATACGGAAAGCTGATTCGGTCATAGCTAAAGTGATGTCcaacaagctttttcttttgcACTCGAAAAAAGCTCGAAAACACAGAAGATATAATAAGgccTGCAACGTCTGTTATAAAGTGTTCGATCGAGTCGGGGACCTGAAGCGGCATCTCATTGAGCACGTCATACGCAGCACCCTAGCCAAGACCCCAGTCAGCAAAGAAGGCTCCCTCAACATCCAGTGCGAGATCTGCCAAGCCGAAACCTTCACTAAAGTTGATAAGTATAAGGCCCATCTTCGCGAACACGCCAAACTTACGATATACCAGTGCACTTTCTGTGATAAATCCTTCAGTGACTCCTCCAACTTttccaaacacaaaaaaatacacGGTACCACTTACTTACAATGCGATCTCTGCCAAAGGAAATTCAACTCTAAAAAGATGATCACACAGCACATGGAGTATCACAACAAAAACTCCCCGCTTAAATGCCTTTATTGCTCAAGAGTATTCCATTTTCAATCGATGCTCAATAAACATGTGAAATGCGCGCATATCAAAGAACTTTCTAACCGATTTAGGTGCAGATTTTGTCACGTTTATTTCAAAACTCTCAAAGAAAAGTGGGATCACGAATGGACCATTCATAATGTTAGAAAAATGATCGTGGACTGTTTAATATGTGGCTCAAAATTCAGAAAGTATTCGGAACtgaaaaaacattgttttgacGAACATGACATGGAAATACCACTTGCaaaaaaacttttgaaaaaGAAAAGGTTCAAGTGA
Protein Sequence: MENTIVTSDCDILYPALIIPKRCTTLETSCELADNVFIDLNITSVDTEGNEMCIYNGFCNVKLIDRYDVNIQQLETNADNASVNFIENEAFLPEIGSQVTCPSYNQSHVWIDPVRSPHVYNSYDATDNQGHSVCQTPAAHITVEHHNTYITQNVYNYKDSIQYSLPEDFEHKKFRKLPAPETTTVALQTSGDQANFYEEDEFECGVFLSQLPEEILNEKESKDREERKYIGLQSDNEALKQLMSTDIQSVSKQRKTILFLGHDSHRGQTIQKISVNDPTLVCSGGGEVDHEVVIDDSEQSNPHQKKYQCDKCKQIFDQISAFKKHMVGSHRSPSSSSCDTSSSSTNDMKFMCTECGKSLKNQEKFELHCMGHGDPELECNMCHKVFASKFTLRTHRKIHNRSYVCSYCYKSYSSFELLRGHSAKKHFAFLCENCDFVTENYDELNLHEDIHKIQPYSKDVVLNDVLTEAIMEEDVMSDTDIITPSPEGHGMKIESEPSCSSQQEEIRKADSVIAKVMSNKLFLLHSKKARKHRRYNKACNVCYKVFDRVGDLKRHLIEHVIRSTLAKTPVSKEGSLNIQCEICQAETFTKVDKYKAHLREHAKLTIYQCTFCDKSFSDSSNFSKHKKIHGTTYLQCDLCQRKFNSKKMITQHMEYHNKNSPLKCLYCSRVFHFQSMLNKHVKCAHIKELSNRFRCRFCHVYFKTLKEKWDHEWTIHNVRKMIVDCLICGSKFRKYSELKKHCFDEHDMEIPLAKKLLKKKRFK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00383045;
90% Identity: iTF_00036022; iTF_00284855;
80% Identity: -