Agen039204.1
Basic Information
- Insect
- Agriphila geniculea
- Gene Symbol
- -
- Assembly
- GCA_943789515.1
- Location
- CALSUL010000542.1:114861-117395[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.25 50 6.4 0.2 1 21 183 203 183 204 0.92 2 17 0.00011 0.021 17.0 2.1 1 23 217 239 217 239 0.98 3 17 0.14 28 7.2 2.6 3 23 271 292 269 292 0.94 4 17 0.43 88 5.6 0.2 2 23 347 369 346 369 0.92 5 17 0.023 4.7 9.6 6.9 1 23 375 398 375 398 0.96 6 17 0.0067 1.3 11.3 1.1 1 20 402 421 402 422 0.94 7 17 0.2 40 6.7 0.8 2 23 432 454 431 454 0.95 8 17 0.083 17 7.9 1.8 1 23 459 482 459 482 0.95 9 17 4.9e-05 0.0099 18.0 0.1 3 23 496 516 494 516 0.96 10 17 0.0005 0.1 14.9 1.6 1 23 522 544 522 544 0.98 11 17 3.5e-05 0.0071 18.5 3.5 1 23 581 603 581 603 0.99 12 17 0.11 23 7.5 0.2 2 23 608 629 607 629 0.94 13 17 0.0072 1.5 11.2 1.1 2 23 650 672 649 672 0.96 14 17 7.4e-05 0.015 17.5 1.8 1 23 678 700 678 700 0.98 15 17 0.00093 0.19 14.0 5.6 2 23 707 728 706 728 0.96 16 17 0.16 32 7.0 0.6 1 23 734 757 734 757 0.88 17 17 0.17 35 6.9 0.7 3 23 764 785 763 785 0.96
Sequence Information
- Coding Sequence
- ATGATTGTATTAGAACAAGATTCTGAAATATGTCAATACACAGACATGGGCAAAATGACTGAAATTATAGCTAAAGACACTTTAAAATCAACGGAAAGAAAAGCAAAAAATGAGAAGATAACTGAAGATAATGCTATTGATGAAATTGAGCCAGAAGACATAAGTAATCTTGGAGcattaaaaaatgaaaaagtaatTGTTGAGCATATTCAACcattatttaatgaaatcacATCAAATATTTCACTGAGAAAAGAATCAAAAGTGGGAGAAACTTTAACAATGGAAAtcccaaaaataaaacaaacgcaAATTGAGGGAAACAACTTTGATTTGGCAGATATAGAAAAAACTGGTATAACACTTGCTAATAACTTTGAAGTGCTGGAAATAGAACATAATGATGATAATATAGAAATTATGTTTGTGAATGATGGTTTAGATTTTTCAGCACAAGAAAACTCAAATgtagaaaatgataaagaaGGCACAGAGTTTTTATCAGGTGTgaagaataagaaaaaaaggACTATACCTTCTTTAACATATAAATGTAAGAAGTGTAAAGAAATATTACCATCCTACAAGGGTTGGAAAATACATGTGAAGATATGTCGGCAAATGAAATTTGAATCtagtaaatttttattcatttgcaAAATTTGCAATGAAACATATATGTCTCAAAGAACTTTAAATACACACTATAAAACACATTCAAAAGTAATATGTAAGGTTTGTCAGTTTATAATCCCAGTAGAAGATTTGACTGAGCACATGAAAATAAACCATGAGGATAACATACACTTgtgtaaattatgtaaattcTTCTCTTTCAATGCTGATGGGTTAAAAGTACATATGAATAAGAGTCACAGTGGTTCTAAATGTGCTTTGTGTCATAAAAAAGTTAGTGAAACCGATTTGAAATTGCACAAGTGCAGATTCAACTGCTTGGAATGCTTAGAAAACATTTGTgtacattataaatatttggtgtCTTATAGAGAACAGGTTTTGAAGAATATctctaaaattaaatgtatagaCTGTGATTACATATGCCCTAGAAGGGAGGCATTGCTTGGTCACGTTAATAGAGAGCATTTGGATCACCACCCGTTTACTTGCGCCCACTGCTCACAGCAATTTTATTCAAGAACCACTTTAAGACATCATTTGAATCAATTTCATAAAGAAAGACATGTATGTGAATTCTGTGATCAAGAATTTACTACATTATTCACTTTAAACAATCACAAGGAGGCATGCCGAACTATTGAGAGGCTCAATAAATGTGATCATTGTATCAGTTCTTTTGTAACATTGGAAGAATTAGCCAATCATGTCAAATTACGACACGACAAAGAATGCTTTGATTGCAAGTTATGCAAGAGACAATTTTtgtcaaatacaaaactgcaagaacATATTTTCAGGGTACACAGTGGCTTGCAAATGAAAAGGAAAAGAAGTATCTTGGATTGTCCCATTTGTGACATAAAGTTTGCAACTAAGAAGCAACTATTAGAGCACATAACCATTCATGGAGCAGGTTCAAGGTTCCCTTGTAAAGATTGTGAAGAGAATtttgatagtttaaaaaaattgcatgcTCATAAACGAATTCATTACGATGACGTCATTCAATGTGTTGAATGTAAAAAAGTTTTGACTGCAACGTTTTTCCCCCATCACATGGTGTACTGCAAACCTGGTAGAGAAGAAAACACAGACATATACACCTGTGAAACGTGCggaaaaacctataactcagaAATGCAGTTGAAACTACACCATAAAACTCACGTGGAGAAAACCCCATGCCCTATATGTCAGAAGCCAACAAAGCCTGTCTACATGAAAAATCACATAAAGTACATGCATAGTAAACCGAAAAAGGCTAAGAAAGTTCCCAAGCCTAAACTTAAAACCAAATACAATATCAAATGTGATTTATGCCAACATACAGTGACCAGATATGGAGAACTAGAAACTCACGTAAATAGATTCCATTTGAAAATAAAGCCTTATCAATGTGACTATTGTAATAAATCGTTTTTCGGGAAGGAAAGACTGAGGAGTCATCTAGTAACACATACAACAACTAAGACCTGCTATTGCAGTGTATGTAATATGAAATTTGAAAACAACGCGTGTCTGAAACTGCATATGCGTAGGCATACCGGAGATACTCCGTATGCTTGTGATATATGCGGTGACAGATTTCGAACTTCTAGCATCATGAACACtcataaagtaaaaaaacattCTGAGAGAAGTGTTGCCTGTCCATTGTGCGACTCAATGTTCTATTTGAAGAGAGAAATGAGAAGTCACTTCAAAAAAGTCCATTGGAAACAGAAGGGAAAAAAGTTTGACCCAAGAGATGTACAAGAATTAAATCCTGCCTTTTATCACTTGTTCGAAGATGGCAGACTACCCAAAGTGGATGGTGAAGAATTGTGTATATCATCGAAATGCAATGAGAAATTTAGTTTGTCAACAAATGTTGTTTTAGAGGGAAATCAGTGA
- Protein Sequence
- MIVLEQDSEICQYTDMGKMTEIIAKDTLKSTERKAKNEKITEDNAIDEIEPEDISNLGALKNEKVIVEHIQPLFNEITSNISLRKESKVGETLTMEIPKIKQTQIEGNNFDLADIEKTGITLANNFEVLEIEHNDDNIEIMFVNDGLDFSAQENSNVENDKEGTEFLSGVKNKKKRTIPSLTYKCKKCKEILPSYKGWKIHVKICRQMKFESSKFLFICKICNETYMSQRTLNTHYKTHSKVICKVCQFIIPVEDLTEHMKINHEDNIHLCKLCKFFSFNADGLKVHMNKSHSGSKCALCHKKVSETDLKLHKCRFNCLECLENICVHYKYLVSYREQVLKNISKIKCIDCDYICPRREALLGHVNREHLDHHPFTCAHCSQQFYSRTTLRHHLNQFHKERHVCEFCDQEFTTLFTLNNHKEACRTIERLNKCDHCISSFVTLEELANHVKLRHDKECFDCKLCKRQFLSNTKLQEHIFRVHSGLQMKRKRSILDCPICDIKFATKKQLLEHITIHGAGSRFPCKDCEENFDSLKKLHAHKRIHYDDVIQCVECKKVLTATFFPHHMVYCKPGREENTDIYTCETCGKTYNSEMQLKLHHKTHVEKTPCPICQKPTKPVYMKNHIKYMHSKPKKAKKVPKPKLKTKYNIKCDLCQHTVTRYGELETHVNRFHLKIKPYQCDYCNKSFFGKERLRSHLVTHTTTKTCYCSVCNMKFENNACLKLHMRRHTGDTPYACDICGDRFRTSSIMNTHKVKKHSERSVACPLCDSMFYLKREMRSHFKKVHWKQKGKKFDPRDVQELNPAFYHLFEDGRLPKVDGEELCISSKCNEKFSLSTNVVLEGNQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00036011;
- 90% Identity
- iTF_00036011;
- 80% Identity
- -