Basic Information

Insect: Agriphila geniculea
Gene Symbol: -
Assembly: GCA_943789515.1
Location: CALSUL010000365.1:160497-173861[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 7.5e-06 0.0015 20.6 2.4 1 23 235 258 235 259 0.97

2 14 0.0013 0.26 13.6 0.6 1 23 265 287 265 287 0.98

3 14 6.2 1.3e+03 2.0 1.8 1 23 291 313 291 313 0.94

4 14 0.0002 0.041 16.1 5.7 1 23 318 340 318 341 0.96

5 14 0.0059 1.2 11.5 0.9 3 23 348 369 348 369 0.97

6 14 1.9 3.9e+02 3.6 0.1 1 19 376 394 376 396 0.88

7 14 0.013 2.7 10.4 0.1 3 23 404 425 403 425 0.92

8 14 0.05 10 8.6 0.1 2 19 452 469 452 471 0.96

9 14 0.29 59 6.2 0.1 3 23 483 503 482 504 0.91

10 14 0.00021 0.043 16.0 0.7 3 23 511 532 510 532 0.97

11 14 0.00095 0.19 14.0 3.5 3 23 583 603 582 603 0.98

12 14 0.0002 0.039 16.2 0.4 1 23 609 631 609 631 0.98

13 14 1.2e-06 0.00024 23.1 1.2 1 23 637 659 637 659 0.97

14 14 0.002 0.4 13.0 1.3 1 23 665 688 665 688 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	7.5e-06	0.0015	20.6	2.4	1	23	235	258	235	259	0.97
2	14	0.0013	0.26	13.6	0.6	1	23	265	287	265	287	0.98
3	14	6.2	1.3e+03	2.0	1.8	1	23	291	313	291	313	0.94
4	14	0.0002	0.041	16.1	5.7	1	23	318	340	318	341	0.96
5	14	0.0059	1.2	11.5	0.9	3	23	348	369	348	369	0.97
6	14	1.9	3.9e+02	3.6	0.1	1	19	376	394	376	396	0.88
7	14	0.013	2.7	10.4	0.1	3	23	404	425	403	425	0.92
8	14	0.05	10	8.6	0.1	2	19	452	469	452	471	0.96
9	14	0.29	59	6.2	0.1	3	23	483	503	482	504	0.91
10	14	0.00021	0.043	16.0	0.7	3	23	511	532	510	532	0.97
11	14	0.00095	0.19	14.0	3.5	3	23	583	603	582	603	0.98
12	14	0.0002	0.039	16.2	0.4	1	23	609	631	609	631	0.98
13	14	1.2e-06	0.00024	23.1	1.2	1	23	637	659	637	659	0.97
14	14	0.002	0.4	13.0	1.3	1	23	665	688	665	688	0.96

Sequence Information

Coding Sequence: ATGTCGGGTCGTGTATTACAACCACAGAAATtggtatggattgaaaccaaaGGTGTATCGgaaaaagtgcgtgcgtgtcgGGCGTGCCTCGCCACTAATATACGGCTGTTCGAACTCAAAGACAACATAAAATCTACTTATGAAGAATTCGTTGGGAACGAGGTGTCGGGCTCGGACAACCTGCCCAAGTATCTCTGCACATACTGCATGGTGCTTATCAGGAAATTCAAGAATTTCAAGGAAAAATGCCTGCGCGCGCAGGAGTTACTTCACAATATCGATGGCATCAAAATGTTAAACACAAAATTCATCAAATCAGTCGACCGGCCATTCTATAATCTCAATAACAACCTTTCCATATCCAACCCCGTATTCATGGAAACCGATTACATCAAAGAGGAAATAGACTTACTAGGCGAAGAACCGGTCGTAGTAAaacaagaaatacaaaaaacTCTTGGAGAAGTTAAAGCCGAAGATATAAACATGGAGGAAGTCCTCGATTACGTGATGGATGACGAGCAATATCTCGAAGAAAGCGAAGGGGAAGTGGAAACGGAAGCGGAACCGAAGCAGAAAAACTTCTTTGACCGGGAAGCTTACGAGATAGAGTATAACATGGATATAATATTGCTTAATGATGAGGAACAGATGATGGAAATCGAAGCCCGGAAACAGTCGCAGAATTTTCTGAAATCGCACTTTAGGTGTGAGGACTGCGGTAAAGGATTTAATTCGAACGAGACGTACACAACCCATTATAACACTATACATCATCCGGATTTGGGCCAATTTGAATGTCCACTTTGTAAATCAAGATTTTCTAGCAAAATTAGGATGAATGCTCATATAAACAGTCACAAATATAGgtacaATTGCCGTGAATGTGAGTTCACCACTATGCGGCGAATGTCCGCTAGCAAGCATAGAGATTACCACATGGGCGTCCTATACACTTGCAACATTTGCCAAAAAGATTTCACTAAACACACATCACTGTTATCGCATACAAGAATCCACCACCCCTCACAAGGTGTATGGTGCCGATACTGCGGAGAATCATTCATAAGTGATATGGGTTTAAAAACCCATAAAAGACTTAAACACACTAACATGATAACCGAGTATATATGCCAAACGTGCAATGCGACTTTCTTATATGAAGACGCTCTAATGGTTCACAATTCAGCGATTTGTGCACCGAACCCGTGTGCTTTCTGCGGTTATTCTTATTCCAGCgataagttacttcaaagtcacgTGCTAGAAGATCACAGAGGGAAGGTAGTGAAGAGTGTTAGGCCTCAATCGTCTCAAGGatcggttaaaaaaattaaaaggaagGATTTTAGGAAATGTGAGCTTTGCGATAATATATTTAATAGTGAGACTGCGTTGGAGAGACATAGTGAGTTAATGGAGGGAGCTTGCGGGGGGATGAGAGCTTGTGTGGAGTGCGGAGAGAGTTTCTTGACGGGAGACATGTTAAAGGAACATGTTATCGATCACCATTCCGAAGTTGAGATGCTGTGTCCGAGGTGCAACAGAACATTCGAGACCGAATCAGAATTCAACGAGCACTACAAACGTGTTCATATGAAGAAAGGTCCTCCCCGTTTAGTAGGGACTAAAACATGGGGGGTAACGGTGTTGAATGACGGACCCGTGATAGCGGAGAAAGCTGGACCCGAGGAAAAAACCGAGCCAGAACTGATCAAGTCTAAACCCAAAGGGACCCCGTCTTTCTGTGAAATCTGTGGGAAGCAGTGTGCAAGTAGCCTTCACCTGACGTACCACCTGCGCATGCACACGGGGGAGAAGCCCTACAAGTGCGCCATCTGCCAGAAGGCCTTCGCTGTGCCCAAGTTCTTGAAGGAGCATTTCAAAGTGCACACCGGTGAAAGGCCGTACGACTGCGATTACTGCACGAAGGCTTTCAAGTCTAAATCTGCCCTCAACCGGCACAAGTTGATTCACACCGGCGAGCGTCGTCACATATGCTCGATCTGCAGCAAAGATTTCCTCACTTCCTCCGATGTTAAGACGCACATCAAGACCGTACACATGAAGATCGTCGGCCCCCCACGTATCAGGAAACCGAAGATCGACAGGGAACTTCAAATTCAAGATGTGCAGATACAGTACATTAATGAATGA
Protein Sequence: MSGRVLQPQKLVWIETKGVSEKVRACRACLATNIRLFELKDNIKSTYEEFVGNEVSGSDNLPKYLCTYCMVLIRKFKNFKEKCLRAQELLHNIDGIKMLNTKFIKSVDRPFYNLNNNLSISNPVFMETDYIKEEIDLLGEEPVVVKQEIQKTLGEVKAEDINMEEVLDYVMDDEQYLEESEGEVETEAEPKQKNFFDREAYEIEYNMDIILLNDEEQMMEIEARKQSQNFLKSHFRCEDCGKGFNSNETYTTHYNTIHHPDLGQFECPLCKSRFSSKIRMNAHINSHKYRYNCRECEFTTMRRMSASKHRDYHMGVLYTCNICQKDFTKHTSLLSHTRIHHPSQGVWCRYCGESFISDMGLKTHKRLKHTNMITEYICQTCNATFLYEDALMVHNSAICAPNPCAFCGYSYSSDKLLQSHVLEDHRGKVVKSVRPQSSQGSVKKIKRKDFRKCELCDNIFNSETALERHSELMEGACGGMRACVECGESFLTGDMLKEHVIDHHSEVEMLCPRCNRTFETESEFNEHYKRVHMKKGPPRLVGTKTWGVTVLNDGPVIAEKAGPEEKTEPELIKSKPKGTPSFCEICGKQCASSLHLTYHLRMHTGEKPYKCAICQKAFAVPKFLKEHFKVHTGERPYDCDYCTKAFKSKSALNRHKLIHTGERRHICSICSKDFLTSSDVKTHIKTVHMKIVGPPRIRKPKIDRELQIQDVQIQYINE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -