Agen009106.1
Basic Information
- Insect
- Agriphila geniculea
- Gene Symbol
- -
- Assembly
- GCA_943789515.1
- Location
- CALSUL010000111.1:629544-647225[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0014 0.29 13.4 0.3 2 23 145 167 144 167 0.94 2 10 2.3 4.7e+02 3.3 0.0 1 21 249 269 249 270 0.93 3 10 0.0005 0.1 14.9 0.0 1 20 301 320 301 322 0.93 4 10 0.092 19 7.8 0.1 3 21 348 366 346 367 0.93 5 10 0.01 2.1 10.7 2.1 1 23 379 401 379 401 0.98 6 10 1.1e-07 2.2e-05 26.4 0.8 1 23 408 430 408 430 0.98 7 10 0.00031 0.063 15.5 0.4 1 23 436 458 436 458 0.98 8 10 0.0073 1.5 11.2 0.0 1 23 464 486 464 486 0.95 9 10 7e-05 0.014 17.6 0.1 1 23 492 514 492 514 0.98 10 10 4.2e-06 0.00084 21.4 0.9 1 23 520 543 520 543 0.97
Sequence Information
- Coding Sequence
- ATGATGTTTGATCCACCCGACTATCCCTACAAAGAGCTTTCTGATcatttaaaagaaaactatGATACAGATGATTTACTTTTTAACAACGTTCCCAATGATAATGACAGAGATGATCATTTATCTTTAATTAACAATGAACTAGTGGCAGTCACTGAACAAATGATATCTAATGTAGAAAATGACCTATCGTATCATTCTAATGATTCTGGGAGATATTTCAACACAGAGAATTTGCCGTTTCTAGATGCAAATACACAGAATGTTGACCAAAATAGTCAACTGATGTATTTAATGCAACCagataatatatttaattacgAACCCACTCTTTTGGATGACAATACAGTCAACCAATTTCTTCTGCCACTACAAAATTCCTCAGATAATAATGATCTAGAGTCTAGGGGCCCAGATTTACTAGCTCTACAATCTTGTGTCATTTGTCACGAAATATTTACTTCAAATGCAGATCTTTTAGATCATACAATATCGATGCATGCCTCAGTAGATGCTAACGAACAAAATCAGAACACTgaaccaataataaataaagatattttgcCAAATAACCAAGCAGAAGaagtaaataataatagaattgACTTTGAGTCTGATTGGCTTATATGCAGTGTATGCGAACGTGTCCTATCTACTGCTTTGGAAGTAGAGCCAACTGAACAACTATGTTGTAGAGACGCCAATGGCAAAGGAAGTGTAGCTTCCCGAAAGCTGCATACTATGTACGTCTGCGATAGCTGTAACGGTCTCTTTGCTGATGGAGATGCCTTGGACAGGCATCGACAACAATGCTATCCCAACAAAGCAGACAATTATTTTGTTGAAGATATGGCTCGTTGCAATCTAGAGACTCCAACTCATCAATGCCCAGAAGTATGCTTCTCCTGCGAGACTTGCGGCACCCAGTTCCCGTCAGCGGAACAGCTGAAGCTCCACGTCTTGGTTTGCCAGCGGCGAGTGTCGCAGAGAACTGGCCGGAGGAGCTACATGAATAATATTAACAGCAATAAAATGTGGAACTGTGGATCGTGCAACCAGCTTTTCGTTACGGCCAGGGAATTGTACAGACATAAGAGAGGCGAGGACCGCCCTCCAGGTGCTCCTCTGAAAGCCTACGTCTGTGAGGAGTGTGACAAGGTTCTAGGAAGCATGTGCGCTTTGCACACGCATAagaaaatgcacaaagtgataAAACCTGGATACCCATGTCGCATTTGCGGGCGTCGCTTCAACCAATCGGGCCACTTAGCAATTCATATGAGAATGCATACCGGGGAACGCCCTTATCCATGTGATCTATGCCCTAAGTCGTTCAAAGTCAAGGTGGAGCGCGACGACCATCGGCGCACGCACACGGGGGAGCGGCCCTTCGCGTGCGCCGCCTGCCCGAAGACGTTCACTGCCGCCGCACGGTTGCGTGAGCATGCCCGCATACACACCGACCAGAGACCGTACCGCTGCGACATCTGTGGGGCTGCGTTCCGGCGACCGTACGCACGCACCGTGCACACACTTATACACACTGGGGAAAAACCGCACGAGTGTGACGTCTGCGGCACTGCTTTCAGacgCTCTGGTGATATGTGGAAGCACAAGAGGACTTTGCATGGTGTTCAAGCTAACGCGCCTGATGGTGATTGA
- Protein Sequence
- MMFDPPDYPYKELSDHLKENYDTDDLLFNNVPNDNDRDDHLSLINNELVAVTEQMISNVENDLSYHSNDSGRYFNTENLPFLDANTQNVDQNSQLMYLMQPDNIFNYEPTLLDDNTVNQFLLPLQNSSDNNDLESRGPDLLALQSCVICHEIFTSNADLLDHTISMHASVDANEQNQNTEPIINKDILPNNQAEEVNNNRIDFESDWLICSVCERVLSTALEVEPTEQLCCRDANGKGSVASRKLHTMYVCDSCNGLFADGDALDRHRQQCYPNKADNYFVEDMARCNLETPTHQCPEVCFSCETCGTQFPSAEQLKLHVLVCQRRVSQRTGRRSYMNNINSNKMWNCGSCNQLFVTARELYRHKRGEDRPPGAPLKAYVCEECDKVLGSMCALHTHKKMHKVIKPGYPCRICGRRFNQSGHLAIHMRMHTGERPYPCDLCPKSFKVKVERDDHRRTHTGERPFACAACPKTFTAAARLREHARIHTDQRPYRCDICGAAFRRPYARTVHTLIHTGEKPHECDVCGTAFRRSGDMWKHKRTLHGVQANAPDGD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00383032;
- 90% Identity
- iTF_00035965;
- 80% Identity
- -