Basic Information

Insect: Agriphila geniculea
Gene Symbol: -
Assembly: GCA_943789515.1
Location: CALSUL010000068.1:678487-680363[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.1 21 7.6 1.4 1 19 177 195 177 200 0.80

2 10 0.18 36 6.8 0.5 1 23 206 229 206 229 0.95

3 10 9e-07 0.00018 23.5 1.8 1 23 235 257 235 257 0.96

4 10 1.9e-06 0.00038 22.5 5.1 1 23 263 285 263 285 0.99

5 10 1.7e-05 0.0034 19.5 0.1 1 23 291 313 291 313 0.97

6 10 7.3e-05 0.015 17.5 0.6 1 23 319 341 319 341 0.97

7 10 6.4e-05 0.013 17.7 1.0 2 23 437 459 436 459 0.95

8 10 2.5e-05 0.005 19.0 1.8 1 23 465 487 465 487 0.95

9 10 1.4e-06 0.00028 22.9 3.7 1 23 493 515 493 515 0.98

10 10 0.0014 0.29 13.5 0.0 3 23 524 544 522 544 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.1	21	7.6	1.4	1	19	177	195	177	200	0.80
2	10	0.18	36	6.8	0.5	1	23	206	229	206	229	0.95
3	10	9e-07	0.00018	23.5	1.8	1	23	235	257	235	257	0.96
4	10	1.9e-06	0.00038	22.5	5.1	1	23	263	285	263	285	0.99
5	10	1.7e-05	0.0034	19.5	0.1	1	23	291	313	291	313	0.97
6	10	7.3e-05	0.015	17.5	0.6	1	23	319	341	319	341	0.97
7	10	6.4e-05	0.013	17.7	1.0	2	23	437	459	436	459	0.95
8	10	2.5e-05	0.005	19.0	1.8	1	23	465	487	465	487	0.95
9	10	1.4e-06	0.00028	22.9	3.7	1	23	493	515	493	515	0.98
10	10	0.0014	0.29	13.5	0.0	3	23	524	544	522	544	0.92

Sequence Information

Coding Sequence: ATGGAGGACTCatttattataaacaatttcCATTCCCTCTGTCGACTGTGTCTCAATAAAAGCACGTTTGCCGTCTCTCTATTTGGAGCTGCACCAGACGACGAAACCAATGTTTCTCTAACCTCCAAAATAGCAGAATGTTTCGAATTGCAGATGGATCCAAATGATGGACTTCCAAGTAGGATATGCTACAAGTGCTTATTCAAATTAGATAAATGTTGTAAGTTCAAAATACAGTGTATACAGAATGAGACAAGATTGAGACAAATCACTTCCCGTTCTGGTGAGTTGGACAACTCCAATTCATCAGAAGTTAGCAGCTATAACTATGCTAATTGCCAAGATTCTCATAAACCTAAACCTGAAGATTTTATTGTGGAGGACAGTGTGGTGATGGTAGTCGACCCTAGCCTCGATTATGATTCTTCGGAGGAATCTGAAACCACTGAACAAATAGAGAATGAACCTACGGAGAGAGTGAATACTCCAGATGGAGAGCCAGTATCAGAATCATTcttcaaaaatgtatttatgtgTCAATACTGTGATCAGGCATTCATTTCACAAGACAAGTGTGCTGAGCATGAAGAAAATTATCATGACCGCAACCTACCATATAAGTGTATAGAGTGCAGTTTGGTTTTCGCGGAAAGAACTCAATATGTGCAGCACACTAAACAAGTTCATGGAAATGATAAACCTTACAATTGCCCAGAATGTGACAAATGTTTTGGGCGGCGCTCAGATTTGAGGAAACATTCTATTGTCCATACTGGGATAAGACCTTATCAATGTCATTTTTGCTTAAAAAGTTTCTCACGTAACACCAATTTGAGTAAACATCTCAGAATCCATGCAGGCCATAAACCACATGTTTGTCCCCTCTGTCCAAGGAGTTTTGTGGCAAAAGGTGATCTACAGAGGCATGTACTTGTACATTCAGGTATGAAACCTTATGCATGCAAAAAATGTCCATTATCCTTTGGCAGGAGAGACAAGTTAATAAAACATGAACTTCGACATGGTCCTGTGAATAATAAACCCAAAACAGAATTTGAAAATGATGCTCATGACATGGTAGTAAATGTTAATCCTTTTAGTAACCTGATGACTTCACCAGTTAATGCTGATTCATCTAATGCAGATTATGATCTGCCCAGAGTTCCAGATCATATTTCAGGAGAAAGTAGTTTCATGAATCAAGTGAGAAatcagaataaaaataaaaatccatcCACATCTGGTAAGCAATTGCTAACCTCTCCTAACAAATCAAAAGTTTTGGCTAAGAACAggcctaaaaatataaaatgtcacCAGTGTCCTAAAAGGTTTTCATCTTTGGATGCATACAAAACTCATGTATCCGTTGCTCATATTGGTTCTAGGGTTTTTCAATGtaaaatttgtttcaaaaaaTTTTCAAGGAAAAGAGAATTAGACAGACATGCTGCATTGCATACCGGCATGAAACCGTTCTCCTGCAGTCAGTGTGATAAAAAATTTACTAGAAAGGATAAGTTAAATAAACATGAACAAACTCATGAGTGCTTGGTTGTGAATATGCCTTGCATAGAATGTGGTGCCACTTTTGAAAAGAAAGCAGACTTAGTAGCCCACATTAAGTCACATTTTACTGATAACTTTGATGATAAGACTTCAgagactgaaataaaaaaagaagatgAACCAGATTTTCCTTTGGATGATAACTTTTATGATTTAGGTACTTGA
Protein Sequence: MEDSFIINNFHSLCRLCLNKSTFAVSLFGAAPDDETNVSLTSKIAECFELQMDPNDGLPSRICYKCLFKLDKCCKFKIQCIQNETRLRQITSRSGELDNSNSSEVSSYNYANCQDSHKPKPEDFIVEDSVVMVVDPSLDYDSSEESETTEQIENEPTERVNTPDGEPVSESFFKNVFMCQYCDQAFISQDKCAEHEENYHDRNLPYKCIECSLVFAERTQYVQHTKQVHGNDKPYNCPECDKCFGRRSDLRKHSIVHTGIRPYQCHFCLKSFSRNTNLSKHLRIHAGHKPHVCPLCPRSFVAKGDLQRHVLVHSGMKPYACKKCPLSFGRRDKLIKHELRHGPVNNKPKTEFENDAHDMVVNVNPFSNLMTSPVNADSSNADYDLPRVPDHISGESSFMNQVRNQNKNKNPSTSGKQLLTSPNKSKVLAKNRPKNIKCHQCPKRFSSLDAYKTHVSVAHIGSRVFQCKICFKKFSRKRELDRHAALHTGMKPFSCSQCDKKFTRKDKLNKHEQTHECLVVNMPCIECGATFEKKADLVAHIKSHFTDNFDDKTSETEIKKEDEPDFPLDDNFYDLGT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01081816;
90% Identity: iTF_00035956; iTF_00319153; iTF_00284764; iTF_00382942;
80% Identity: -