Basic Information

Insect: Agriphila geniculea
Gene Symbol: -
Assembly: GCA_943789515.1
Location: CALSUL010000951.1:301297-306567[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 9.3e-05 0.019 17.2 3.9 1 23 174 196 174 196 0.97

2 12 0.0063 1.3 11.4 2.1 1 23 200 222 200 222 0.97

3 12 7.5e-05 0.015 17.5 1.0 2 23 243 264 242 264 0.97

4 12 0.00039 0.078 15.2 2.8 2 23 272 293 271 293 0.95

5 12 0.0017 0.35 13.2 2.4 1 23 299 321 299 322 0.96

6 12 5.3e-05 0.011 17.9 1.3 3 23 329 349 328 349 0.99

7 12 2.2e-06 0.00043 22.3 2.1 1 23 355 377 355 377 0.96

8 12 8.8e-06 0.0018 20.4 0.4 1 23 383 405 383 405 0.97

9 12 1.2e-05 0.0024 20.0 2.6 1 23 411 433 411 433 0.98

10 12 9.9e-06 0.002 20.2 7.3 1 23 439 461 439 461 0.98

11 12 1.6e-06 0.00032 22.7 0.5 1 23 467 489 467 489 0.98

12 12 0.00014 0.027 16.7 1.6 1 23 495 517 495 517 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	9.3e-05	0.019	17.2	3.9	1	23	174	196	174	196	0.97
2	12	0.0063	1.3	11.4	2.1	1	23	200	222	200	222	0.97
3	12	7.5e-05	0.015	17.5	1.0	2	23	243	264	242	264	0.97
4	12	0.00039	0.078	15.2	2.8	2	23	272	293	271	293	0.95
5	12	0.0017	0.35	13.2	2.4	1	23	299	321	299	322	0.96
6	12	5.3e-05	0.011	17.9	1.3	3	23	329	349	328	349	0.99
7	12	2.2e-06	0.00043	22.3	2.1	1	23	355	377	355	377	0.96
8	12	8.8e-06	0.0018	20.4	0.4	1	23	383	405	383	405	0.97
9	12	1.2e-05	0.0024	20.0	2.6	1	23	411	433	411	433	0.98
10	12	9.9e-06	0.002	20.2	7.3	1	23	439	461	439	461	0.98
11	12	1.6e-06	0.00032	22.7	0.5	1	23	467	489	467	489	0.98
12	12	0.00014	0.027	16.7	1.6	1	23	495	517	495	517	0.96

Sequence Information

Coding Sequence: atgaatccagttatcaaaaataaaaatattgataaatgcTGTCGAACTTGCCTGAATGATGTTTCAAGCAAATACTATGAATTATTTGCCGACTATCAAAACTGTCCAACTATCGCTGAAATGTTGCTGATTTGCACCTCAATAGTGGTTGAAAAAGAAGATAGATTACCAAAGAAACTGTGTGGCAGCTGTTATAACTGTTTAGTCAGCTTTTATGACTTCAGGATTCAAGCAGAGAAAGTTGAAGATGCATTAAAAATGTCACAAGATGATATTATAAAATCAGAATCATTAGTGCCAGTAGAAAAACCGTTTGAGATAAAAACTGAAGTAGAAAATATACAACAAATTCAACGTCAAGATTTCAGTGCTGATTTAGACACTGATTTTGATGATCCTGGTGATGTTATAGAAGGAAAGCAAGAATTTTCAGAAAGTGAAGATCAAAATTATTGTAATGTATTACAAGTGAAGACAGAGAATTGTCATGAACTACAGAAATCCATTGTAAACGATAGTTATAGATGCAAAGtttgtaacaaaaaatttaatatgaaaacaaagttaaaaaaacatgaAGCAAAACACAGGAGAGAATACTCATGCAAGTTTTGCTCTGATACTTTTGTTCAAGAGCGTCAACTTTTTAGACATTTAGTGAAACATAGTGAAAACAAAGCAGAGTCAATGCTAGAAGTTAACCAAAATGAAATCGGCCAAAGCATAAAATGTAGTATTTGTTCAGTTAATTTTAAGTCAGTACATTCCTTGTCGGCTCACATGAGGGTCCACGTTGAGAAAGGCAGAGTTTTGTCATGCCGTTTATGTGCTAAAGTGTTCAAGAAGTTGAGTCACTTAAAGAGGCATGAACTGTCACATGAAGTTAACCGACCCTTTAAGTGTAATACGTGCCCAAAATCATTTCTTACGGAGATTTTACTGAATGAACATACAAACAGGCACCATGGTGTAAAGCCCCATGGATGTCCTTTGTGCAGTAAATCGTTTTGTAACATATCTGGTCTCACTACACATCTGAAAGTCCACACCAGAGGACGGATTTATTTGTGTTCCAGCTGCGGTAAAAAGTTTGATTCTAGTACAAATTTAAATCAACATATGAAGAGACATATTGGTCTTAAGTTGTTTGCTTGCAACTTATGCCCAAGATCTTTTGTAAGCAAAGGTGAGCTCAAATCACATTCCAACACGCATACAGGAGAGAAGTCGTACACCTGCGACCAGTGCGGAGCGACCTTTACTAGCTGCAGCTCGTTGGCCAAGCATAAACTACGACATTTGGGTGTTAAGCCACACCAGTGTGATACTTGTTCTAggaagttCTCAAGCAAGGATCACTTAAAACGTCATTACCGTATCCATACTGGTGAGAAGCCGTATCGATGTGAAATCTGCGAGCGAGCGTTCACTCAAAGCAACGATTTAATTAAGCACAAGAGGGCGCATTTGGGAGATAAGTTGTATAGATGTTCCCAATGTCCAGAAAGCTTCCGTCTACAAAATGAATTGCGTCACCATGTTTCCGAACACTTCATTTCGTCTCGTCTTGAAGAAATCAACATGAACAGTTCTTCTCAGAATTGTCCAAATGATGACCAAGAATTAATACAGGAAAATCAAAAAACTTTAGATGTCAATAAGGACagcttaataattaatattgaattgcaAGAAAAGTCTACACCAACTCATTCTGAAGCGAATCAGTGA
Protein Sequence: MNPVIKNKNIDKCCRTCLNDVSSKYYELFADYQNCPTIAEMLLICTSIVVEKEDRLPKKLCGSCYNCLVSFYDFRIQAEKVEDALKMSQDDIIKSESLVPVEKPFEIKTEVENIQQIQRQDFSADLDTDFDDPGDVIEGKQEFSESEDQNYCNVLQVKTENCHELQKSIVNDSYRCKVCNKKFNMKTKLKKHEAKHRREYSCKFCSDTFVQERQLFRHLVKHSENKAESMLEVNQNEIGQSIKCSICSVNFKSVHSLSAHMRVHVEKGRVLSCRLCAKVFKKLSHLKRHELSHEVNRPFKCNTCPKSFLTEILLNEHTNRHHGVKPHGCPLCSKSFCNISGLTTHLKVHTRGRIYLCSSCGKKFDSSTNLNQHMKRHIGLKLFACNLCPRSFVSKGELKSHSNTHTGEKSYTCDQCGATFTSCSSLAKHKLRHLGVKPHQCDTCSRKFSSKDHLKRHYRIHTGEKPYRCEICERAFTQSNDLIKHKRAHLGDKLYRCSQCPESFRLQNELRHHVSEHFISSRLEEINMNSSSQNCPNDDQELIQENQKTLDVNKDSLIINIELQEKSTPTHSEANQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00035938;
90% Identity: iTF_00035938;
80% Identity: -