Basic Information

Insect: Agriphila geniculea
Gene Symbol: -
Assembly: GCA_943789515.1
Location: CALSUL010000610.1:447723-454673[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 7.8 1.6e+03 1.7 1.1 1 17 93 109 93 110 0.85

2 13 0.00036 0.073 15.3 0.4 1 23 248 270 248 270 0.98

3 13 5.9e-06 0.0012 20.9 3.4 2 23 278 299 277 299 0.97

4 13 1.9e-05 0.0038 19.4 1.0 1 23 305 327 305 327 0.98

5 13 1.4e-05 0.0028 19.8 0.7 1 23 336 358 336 358 0.97

6 13 2.5e-06 0.00051 22.1 0.1 1 23 364 386 364 386 0.98

7 13 0.052 11 8.5 0.2 1 19 392 410 392 413 0.83

8 13 7.3e-06 0.0015 20.7 0.1 1 21 431 451 431 452 0.94

9 13 0.0031 0.62 12.4 9.8 1 23 459 481 459 481 0.98

10 13 2.8e-09 5.6e-07 31.4 1.2 1 23 487 509 487 509 0.99

11 13 3.8e-07 7.7e-05 24.7 1.8 1 23 515 537 515 537 0.99

12 13 5.5e-05 0.011 17.9 1.4 1 23 543 564 543 564 0.96

13 13 0.0041 0.84 12.0 3.1 1 23 570 592 570 592 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	7.8	1.6e+03	1.7	1.1	1	17	93	109	93	110	0.85
2	13	0.00036	0.073	15.3	0.4	1	23	248	270	248	270	0.98
3	13	5.9e-06	0.0012	20.9	3.4	2	23	278	299	277	299	0.97
4	13	1.9e-05	0.0038	19.4	1.0	1	23	305	327	305	327	0.98
5	13	1.4e-05	0.0028	19.8	0.7	1	23	336	358	336	358	0.97
6	13	2.5e-06	0.00051	22.1	0.1	1	23	364	386	364	386	0.98
7	13	0.052	11	8.5	0.2	1	19	392	410	392	413	0.83
8	13	7.3e-06	0.0015	20.7	0.1	1	21	431	451	431	452	0.94
9	13	0.0031	0.62	12.4	9.8	1	23	459	481	459	481	0.98
10	13	2.8e-09	5.6e-07	31.4	1.2	1	23	487	509	487	509	0.99
11	13	3.8e-07	7.7e-05	24.7	1.8	1	23	515	537	515	537	0.99
12	13	5.5e-05	0.011	17.9	1.4	1	23	543	564	543	564	0.96
13	13	0.0041	0.84	12.0	3.1	1	23	570	592	570	592	0.94

Sequence Information

Coding Sequence: ATGGAACTTGATGAAATATACTTGGAGAATTCAGAACATAGTTTAAATCCAAATGTATTGGATGATTGTATAAAAATTGAAGTTCCGTACGACCTATACCAACACATTAAATCGAACGGAACATTAGATAATTTGTGCCGAACATGTTTAGCGCCAGTAGAAGAATGTTCTGTATCGTTATTGGCCCCAGTAGAAGAAGGAAGTCAAATGTGTTTACTGGATATGTTAAAAACCTTCACTTCTTTTCAAGAAGTTTCAAGCACTGGTTTACCCACCTATATTTGTACAAAGTGTCATGTTGAACTTGTACAATGTTATAATTACAAAATCAAATGTGAAAATTCTGAATGCACCTTACAGACATTATTAAAAGGACAATTTATACCCAATGCTGAGAGCATTGCAGAAGTTAGggaaataatattaaataaatgtgAAGAATCCAGTTTAAAGTTTGACACAGAAAATGAGTACAATATTAAAGAAGTCATGAAAgaagaATTAAATGTTCAACATCTTGATGACTTTGATTATGTTGAAAGTGACAATGAAGCTCTACATATTGTACTGGAAGAGGTTAAAGTAAAAAAGAACAAAAAAGAAGTAAAGTACACAGGTTCAAGATCATCACAGAAAGGTAAATCAACTAAAAAAGAGAAAGCACAAAGAGAACATAAATCAAAAAAAGGCAAAAGTATTCAACTATTCTCAGTAAAACAGCAAAATCAAGATAAAATTTCATATCCGTGTGGGGAGTGCAAAGAGGTGTTTAATTCTCAACACGACCAGCAAGTACATTTGTCTGTGCATAGCATGGTAGGCTCCATGtggaaatgtaaaaaatgtcCCAAAGAGTTCAAAAaaaagaCATTGTTGCGCCGTCATCTTCAACGACATATGGAATCGAAGCGATTCAAATGTTCAGTATGTGAGAAGTCTTTCGCAGAATTCTATGCTTTGCGACGACATAGTCGAGTACATACAGGGGAAACTGTAGAGAAGAAACACGTCTGTAACATCTGTGGTAAAAGATACGAAGGCAGCAACCAGCTAAACGCGCATATGTCGCAGCACAGCAGCGAGCGGCCGTTCGTGTGCGCAGTATGCGGCAAGGCGTTCTCCACCGCGCGCCTGCTCAAGTCGCACCGCCTCGTGCACTCTGACGTTATGCCCTACGCCTGCCTCTACTGCGACAAACGGTTCGTGTCTGCTACCCTCGCCTATTTACACAGATACGAAGGCAGCAACCAGCTGAGCGCGCATATGTCGCAGCACAGCAGCGAGAGGCCGTTCGTGTGCACAGTATGCGGCAAGGCGTTCACCACCGCGCGCCTGCTCAAGTCGCACCGCCTCGTGCGCTCGGACGTTATGCCCTACGCCTGCCACTACTGCGACAAACGGTTCCGTCACGATTCAACGCGTAATACGCATCACCGCACTCACACTGGAGAGAAACCTTACGTATGTTCAACTTGCGGCAAAACCTTCATTCAGAATTCCAACTTGCGGCTGCACATGAGGACACATActgGTGAGAGACCTTATTCATGTGATAAGTGCGATAAAAAGTTCACCTCGGGATCCTCCCTGAAAATGCACATACGCACTCATACAGGGGAGAAACCATACAGCTGCAAAATTTGCGGCAAAAGATTCGCACGGAGGGATCTAAGCACGCATATGCGTAATCACACGGGCGAGAAGCCGCATGCATGCAGCCTGTGTCCCAAGAAGTTTGTGAACGCCTCACGGTTGCGAGACCATTGCCGAATACATACAGGTATAGTTGATAATTCTAATCATCAACAGGCAATATAA
Protein Sequence: MELDEIYLENSEHSLNPNVLDDCIKIEVPYDLYQHIKSNGTLDNLCRTCLAPVEECSVSLLAPVEEGSQMCLLDMLKTFTSFQEVSSTGLPTYICTKCHVELVQCYNYKIKCENSECTLQTLLKGQFIPNAESIAEVREIILNKCEESSLKFDTENEYNIKEVMKEELNVQHLDDFDYVESDNEALHIVLEEVKVKKNKKEVKYTGSRSSQKGKSTKKEKAQREHKSKKGKSIQLFSVKQQNQDKISYPCGECKEVFNSQHDQQVHLSVHSMVGSMWKCKKCPKEFKKKTLLRRHLQRHMESKRFKCSVCEKSFAEFYALRRHSRVHTGETVEKKHVCNICGKRYEGSNQLNAHMSQHSSERPFVCAVCGKAFSTARLLKSHRLVHSDVMPYACLYCDKRFVSATLAYLHRYEGSNQLSAHMSQHSSERPFVCTVCGKAFTTARLLKSHRLVRSDVMPYACHYCDKRFRHDSTRNTHHRTHTGEKPYVCSTCGKTFIQNSNLRLHMRTHTGERPYSCDKCDKKFTSGSSLKMHIRTHTGEKPYSCKICGKRFARRDLSTHMRNHTGEKPHACSLCPKKFVNASRLRDHCRIHTGIVDNSNHQQAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -