Agen013949.1
Basic Information
- Insect
- Agriphila geniculea
- Gene Symbol
- -
- Assembly
- GCA_943789515.1
- Location
- CALSUL010000166.1:53515-65749[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00053 0.11 14.8 0.5 1 23 27 50 27 50 0.97 2 20 0.057 12 8.4 0.4 2 20 67 85 66 87 0.93 3 20 0.24 49 6.4 4.1 3 23 152 173 150 173 0.89 4 20 7.3 1.5e+03 1.8 0.0 1 23 185 206 185 206 0.82 5 20 0.00049 0.099 14.9 0.2 1 20 212 231 212 233 0.95 6 20 0.00049 0.099 14.9 0.2 1 20 259 278 259 280 0.95 7 20 0.00049 0.099 14.9 0.2 1 20 306 325 306 327 0.95 8 20 0.00049 0.099 14.9 0.2 1 20 353 372 353 374 0.95 9 20 0.00049 0.099 14.9 0.2 1 20 400 419 400 421 0.95 10 20 0.00049 0.099 14.9 0.2 1 20 447 466 447 468 0.95 11 20 0.00049 0.099 14.9 0.2 1 20 494 513 494 515 0.95 12 20 0.00049 0.099 14.9 0.2 1 20 541 560 541 562 0.95 13 20 0.00049 0.099 14.9 0.2 1 20 588 607 588 609 0.95 14 20 0.00049 0.099 14.9 0.2 1 20 635 654 635 656 0.95 15 20 0.00049 0.099 14.9 0.2 1 20 682 701 682 703 0.95 16 20 0.00049 0.099 14.9 0.2 1 20 729 748 729 750 0.95 17 20 0.00049 0.099 14.9 0.2 1 20 776 795 776 797 0.95 18 20 0.00049 0.099 14.9 0.2 1 20 823 842 823 844 0.95 19 20 0.00049 0.099 14.9 0.2 1 20 870 889 870 891 0.95 20 20 0.00049 0.099 14.9 0.2 1 20 917 936 917 938 0.95
Sequence Information
- Coding Sequence
- ATGGGAATGAAAGCGTATATCTTGTTGAACAGCCATAGATCGACGTACTACACGCACTTGCGCACGCATCGCAGTGACTATGTGTGCACGCTGTGCGGCGTTTCGTTCGTTTCTGAAGCCGGGCTGCATCAGCATAAGAAGATCAAACACGTTACTGATGACATTgaGAGTCCGGATGACGATGAAGATGTAAACACGACTTGCGGCAAGTGCGACATTACGTTTGAAACCAACAAGGCGTACGTGGAGCATCTGTTCCACTCCGCGATGCACTCTGAAGGGCTGGAGGATGAATTGCAAGACGAATACTCTTTGCCAAGAAAAGTGCTGGGAAAGAAGGAGCAAACCAaaATTACCAAAGGACTAGTCAAAATAAAACCCTACGACGTACCAATAATGCCATTCAAAAAACGATCAAAGAAGCCCAAACGGTTGCGTCGAAAGCCTATGAATTGTCATCAATGCGGCAAATACTTCGAAACCCAAGCGGCGTGTATGAGGCACCACATAGAGGAGCACCCTCGCACTTCGTTCTTCCCGCCCACCGCAAGACACATTTGTGAAGTCTGTGGCGTTAGTTTAGCGCCTGGCAGCGTGGCGATGCACCAGAACATGCACACTCGCAGCAAGGTGTACTCGTGCGACACCTGCGGCCGCGGGTTCCACTCCAGCGTCGGCCTCAAGCGGCATCTCGTGGTGAGTGAGGGGCATTACATTATACAACATAGTAACATGTGTGGCATGCACCAGAACATGCACACTCGCAGCAAGGTGTACTCGTGCGACACCTGCGGCCGCGGGTTCCACTCCAGCGTCGGCCTCAAGCGGCATCTCGTGGTGAGTGAGGGGCATTACATTATACAACATAGTAACATGTGTGGCATGCACCAGAACATGCACACTCGCAGCAAGGTGTACTCGTGCGACACCTGCGGCCGCGGGTTCCACTCCAGCGTCGGCCTCAAGCGGCATCTCGTGGTGAGTGAGGGGCATTACATTATACAACATAGTAACATGTGTGGCATGCACCAGAACATGCACACTCGCAGCAAGGTGTACTCGTGCGACACCTGCGGCCGCGGGTTCCACTCCAGCGTCGGCCTCAAGCGGCATCTCGTGGTGAGTGAGGGGCATTACATTATACAACATAGTAACATGTGTGGCATGCACCAGAACATGCACACTCGCAGCAAGGTGTACTCGTGCGACACCTGCGGCCGCGGGTTCCACTCCAGCGTCGGCCTCAAGCGGCATCTCGTGGTGAGTGAGGGGCATTACATTATACAACATAGTAACATGTGTGGCATGCACCAGAACATGCACACTCGCAGCAAGGTGTACTCGTGCGACACCTGCGGCCGCGGGTTCCACTCCAGCGTCGGCCTCAAGCGGCATCTCGTGGTGAGTGAGGGGCATTACATTATACAACATAGTAACATGTGTGGCATGCACCAGAACATGCACACTCGCAGCAAGGTGTACTCGTGCGACACCTGCGGCCGCGGGTTCCACTCCAGCGTCGGCCTCAAGCGGCATCTCGTGGTGAGTGAGGGGCATTACATTATACAACATAGTAACATGTGTGGCATGCACCAGAACATGCACACTCGCAGCAAGGTGTACTCGTGCGACACCTGCGGCCGCGGGTTCCACTCCAGCGTCGGCCTCAAGCGGCATCTCGTGGTGAGTGAGGGGCATTACATTATACAACATAGTAACATGTGTGGCATGCACCAGAACATGCACACTCGCAGCAAGGTGTACTCGTGCGACACCTGCGGCCGCGGGTTCCACTCCAGCGTCGGCCTCAAGCGGCATCTCGTGGTGAGTGAGGGGCATTACATTATACAACATAGTAACATGTGTGGCATGCACCAGAACATGCACACTCGCAGCAAGGTGTACTCGTGCGACACCTGCGGCCGCGGGTTCCACTCCAGCGTCGGCCTCAAGCGGCATCTCGTGGTGAGTGAGGGGCATTACATTATACAACATAGTAACATGTGTGGCATGCACCAGAACATGCACACTCGCAGCAAGGTGTACTCGTGCGACACCTGCGGCCGCGGGTTCCACTCCAGCGTCGGCCTCAAGCGGCATCTCGTGGTGAGTGAGGGGCATTACATTATACAACATAGTAACATGTGTGGCATGCACCAGAACATGCACACTCGCAGCAAGGTGTACTCGTGCGACACCTGCGGCCGCGGGTTCCACTCCAGCGTCGGCCTCAAGCGGCATCTCGTGGTGAGTGAGGGGCATTACATTACACAACATAGTAACATGTGTGGCATGCACCAGAACATGCACACTCGCAGCAAGGTGTACTCGTGCGACACCTGCGGCCGCGGGTTCCACTCCAGCGTCGGCCTCAAGCGGCATCTCGTGGTGAGTGAGGGGCATTACATTACACAACATAGTAACATGTGTGGCATGCACCAGAACATGCACACTCGCAGCAAGGTGTACTCGTGCGACACCTGCGGCCGCGGGTTCCACTCCAGCGTCGGCCTCAAGCGGCATCTCGTGGTGAGTGAGGGGCATTACATTATACAACATAGTAACATGTGTGGCATGCACCAGAACATGCACACTCGCAGCAAGGTGTACTCGTGCGACACCTGCGGCCGCGGGTTCCACTCCAGCGTCGGCCTCAAGCGGCATCTCGTGGTGAGTGAGGGGCATTACATTATACAACATAGTAACATGTGTGGCATGCACCAGAACATGCACACTCGCAGCAAGGTGTACTCGTGCGACACCTGCGGCCGCGGGTTCCACTCCAGCGTCGGCCTCAAGCGGCATCTCGTGGTGAGTGAGGGGCATTACATTATACAACATAGTAACATGTGTGGCATGCACCAGAACATGCACACTCGCAGAAAGGTGTACTCGTGCGACACCTGCGGCCTCAAGCGGCATCTCGTGGCGGTGCGTGGGTTCGAGCTTCTCGATCCTTCCCCGGGCTTCTTCTCCCGGGTCTACTACCCCTGGGTTCTTGGAGCCGCTAGACACGGCCGTTCGACGAGTTGA
- Protein Sequence
- MGMKAYILLNSHRSTYYTHLRTHRSDYVCTLCGVSFVSEAGLHQHKKIKHVTDDIESPDDDEDVNTTCGKCDITFETNKAYVEHLFHSAMHSEGLEDELQDEYSLPRKVLGKKEQTKITKGLVKIKPYDVPIMPFKKRSKKPKRLRRKPMNCHQCGKYFETQAACMRHHIEEHPRTSFFPPTARHICEVCGVSLAPGSVAMHQNMHTRSKVYSCDTCGRGFHSSVGLKRHLVVSEGHYIIQHSNMCGMHQNMHTRSKVYSCDTCGRGFHSSVGLKRHLVVSEGHYIIQHSNMCGMHQNMHTRSKVYSCDTCGRGFHSSVGLKRHLVVSEGHYIIQHSNMCGMHQNMHTRSKVYSCDTCGRGFHSSVGLKRHLVVSEGHYIIQHSNMCGMHQNMHTRSKVYSCDTCGRGFHSSVGLKRHLVVSEGHYIIQHSNMCGMHQNMHTRSKVYSCDTCGRGFHSSVGLKRHLVVSEGHYIIQHSNMCGMHQNMHTRSKVYSCDTCGRGFHSSVGLKRHLVVSEGHYIIQHSNMCGMHQNMHTRSKVYSCDTCGRGFHSSVGLKRHLVVSEGHYIIQHSNMCGMHQNMHTRSKVYSCDTCGRGFHSSVGLKRHLVVSEGHYIIQHSNMCGMHQNMHTRSKVYSCDTCGRGFHSSVGLKRHLVVSEGHYIIQHSNMCGMHQNMHTRSKVYSCDTCGRGFHSSVGLKRHLVVSEGHYIIQHSNMCGMHQNMHTRSKVYSCDTCGRGFHSSVGLKRHLVVSEGHYITQHSNMCGMHQNMHTRSKVYSCDTCGRGFHSSVGLKRHLVVSEGHYITQHSNMCGMHQNMHTRSKVYSCDTCGRGFHSSVGLKRHLVVSEGHYIIQHSNMCGMHQNMHTRSKVYSCDTCGRGFHSSVGLKRHLVVSEGHYIIQHSNMCGMHQNMHTRSKVYSCDTCGRGFHSSVGLKRHLVVSEGHYIIQHSNMCGMHQNMHTRRKVYSCDTCGLKRHLVAVRGFELLDPSPGFFSRVYYPWVLGAARHGRSTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -